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For: Sudo Y, Iwamoto M, Shimono K, Kamo N. Association of pharaonis phoborhodopsin with its cognate transducer decreases the photo-dependent reactivity by water-soluble reagents of azide and hydroxylamine. Biochim Biophys Acta 2002;1558:63-9. [PMID: 11750265 DOI: 10.1016/s0005-2736(01)00423-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Number Cited by Other Article(s)
1
Tsuneishi T, Takahashi M, Tsujimura M, Kojima K, Ishikita H, Takeuchi Y, Sudo Y. Exploring the Retinal Binding Cavity of Archaerhodopsin-3 by Replacing the Retinal Chromophore With a Dimethyl Phenylated Derivative. Front Mol Biosci 2022;8:794948. [PMID: 34988122 PMCID: PMC8721008 DOI: 10.3389/fmolb.2021.794948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 11/09/2021] [Indexed: 11/13/2022]  Open
2
Nakajima Y, Kojima K, Kashiyama Y, Doi S, Nakai R, Sudo Y, Kogure K, Yoshizawa S. Bacterium Lacking a Known Gene for Retinal Biosynthesis Constructs Functional Rhodopsins. Microbes Environ 2021;35. [PMID: 33281127 PMCID: PMC7734400 DOI: 10.1264/jsme2.me20085] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
3
Kojima K, Kurihara R, Sakamoto M, Takanashi T, Kuramochi H, Zhang XM, Bito H, Tahara T, Sudo Y. Comparative Studies of the Fluorescence Properties of Microbial Rhodopsins: Spontaneous Emission Versus Photointermediate Fluorescence. J Phys Chem B 2020;124:7361-7367. [PMID: 32790405 DOI: 10.1021/acs.jpcb.0c06560] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
4
Honda N, Tsukamoto T, Sudo Y. Comparative evaluation of the stability of seven-transmembrane microbial rhodopsins to various physicochemical stimuli. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.05.055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
5
Kanehara K, Yoshizawa S, Tsukamoto T, Sudo Y. A phylogenetically distinctive and extremely heat stable light-driven proton pump from the eubacterium Rubrobacter xylanophilus DSM 9941T. Sci Rep 2017;7:44427. [PMID: 28290523 PMCID: PMC5349596 DOI: 10.1038/srep44427] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 02/07/2017] [Indexed: 11/13/2022]  Open
6
Inoue K, Tsukamoto T, Sudo Y. Molecular and evolutionary aspects of microbial sensory rhodopsins. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2013;1837:562-77. [PMID: 23732219 DOI: 10.1016/j.bbabio.2013.05.005] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 05/14/2013] [Accepted: 05/16/2013] [Indexed: 02/03/2023]
7
Mori A, Yagasaki J, Homma M, Reissig L, Sudo Y. Investigation of the chromophore binding cavity in the 11-cis acceptable microbial rhodopsin MR. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.11.020] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
8
Sudo Y, Homma M. [Photosensing by membrane-embedded receptors and its application for the life scientists]. YAKUGAKU ZASSHI 2012;132:407-16. [PMID: 22465915 DOI: 10.1248/yakushi.132.407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
9
Tamogami J, Kikukawa T, Ikeda Y, Demura M, Nara T, Kamo N. Photo-induced bleaching of sensory rhodopsin II (phoborhodopsin) from Halobacterium salinarum by hydroxylamine: identification of the responsible intermediates. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2012;106:87-94. [PMID: 22104601 DOI: 10.1016/j.jphotobiol.2011.10.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2011] [Revised: 10/18/2011] [Accepted: 10/21/2011] [Indexed: 05/31/2023]
10
Sudo Y, Tanaka R, Kobayashi T, Kamo N, Kohno T, Kojima C. Functional expression of a two-transmembrane HtrII protein using cell-free synthesis. Biophysics (Nagoya-shi) 2011;7:51-58. [PMID: 27857592 PMCID: PMC5036783 DOI: 10.2142/biophysics.7.51] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2011] [Accepted: 05/23/2011] [Indexed: 12/01/2022]  Open
11
Irieda H, Reissig L, Kawanabe A, Homma M, Kandori H, Sudo Y. Structural Characteristics around the β-Ionone Ring of the Retinal Chromophore in Salinibacter Sensory Rhodopsin I. Biochemistry 2011;50:4912-22. [DOI: 10.1021/bi200284s] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
12
Protein-protein interaction changes in an archaeal light-signal transduction. J Biomed Biotechnol 2010;2010:424760. [PMID: 20671933 PMCID: PMC2910557 DOI: 10.1155/2010/424760] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2009] [Accepted: 05/05/2010] [Indexed: 11/18/2022]  Open
13
Suzuki D, Irieda H, Homma M, Kawagishi I, Sudo Y. Phototactic and chemotactic signal transduction by transmembrane receptors and transducers in microorganisms. SENSORS 2010;10:4010-39. [PMID: 22319339 PMCID: PMC3274258 DOI: 10.3390/s100404010] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Revised: 03/29/2010] [Accepted: 04/09/2010] [Indexed: 12/17/2022]
14
Sudo Y, Okada A, Suzuki D, Inoue K, Irieda H, Sakai M, Fujii M, Furutani Y, Kandori H, Homma M. Characterization of a Signaling Complex Composed of Sensory Rhodopsin I and Its Cognate Transducer Protein from the Eubacterium Salinibacter ruber. Biochemistry 2009;48:10136-45. [DOI: 10.1021/bi901338d] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
A long-lived M-like state of phoborhodopsin that mimics the active state. Biophys J 2008;95:753-60. [PMID: 18375514 DOI: 10.1529/biophysj.107.125294] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
16
Sudo Y, Yamabi M, Iwamoto M, Shimono K, Kamo N. Interaction of Natronobacterium pharaonis Phoborhodopsin (Sensory Rhodopsin II) with its Cognate Transducer Probed by Increase in the Thermal Stability¶. Photochem Photobiol 2007. [DOI: 10.1562/0031-8655(2003)0780511ionpps2.0.co2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
17
Taniguchi Y, Ikehara T, Kamo N, Yamasaki H, Toyoshima Y. Dynamics of Light-Induced Conformational Changes of the Phoborhodopsin/Transducer Complex Formed in then-Dodecyl β-d-Maltoside Micelle. Biochemistry 2007;46:5349-57. [PMID: 17432830 DOI: 10.1021/bi602482s] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Roy S, Kikukawa T, Sharma P, Kamo N. All-Optical Switching in Pharaonis Phoborhodopsin Protein Molecules. IEEE Trans Nanobioscience 2006;5:178-87. [PMID: 16999243 DOI: 10.1109/tnb.2006.880828] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
19
Shitanda I, Tatsuma T. Electrochemical System for the Simultaneous Monitoring of Algal Motility and Phototaxis. Anal Chem 2005;78:349-53. [PMID: 16383348 DOI: 10.1021/ac051755x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Zadok U, Klare JP, Engelhard M, Sheves M. The hydroxylamine reaction of sensory rhodopsin II: light-induced conformational alterations with C13=C14 nonisomerizable pigment. Biophys J 2005;89:2610-7. [PMID: 16085771 PMCID: PMC1366761 DOI: 10.1529/biophysj.105.065631] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
21
Yamaguchi S, Shimono K, Sudo Y, Tuzi S, Naito A, Kamo N, Saitô H. Conformation and dynamics of the [3-(13)C]Ala, [1-(13)C]Val-labeled truncated pharaonis transducer, pHtrII(1-159), as revealed by site-directed (13)C solid-state NMR: changes due to association with phoborhodopsin (sensory rhodopsin II). Biophys J 2004;86:3131-40. [PMID: 15111426 PMCID: PMC1304178 DOI: 10.1016/s0006-3495(04)74361-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
22
Sudo Y, Yamabi M, Iwamoto M, Shimono K, Kamo N. Interaction of Natronobacterium pharaonis Phoborhodopsin (Sensory Rhodopsin II) with its Cognate Transducer Probed by Increase in the Thermal Stability¶. Photochem Photobiol 2003;78:511-6. [PMID: 14653584 DOI: 10.1562/0031-8655(2003)078<0511:ionpps>2.0.co;2] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
23
Pebay-Peyroula E, Royant A, Landau EM, Navarro J. Structural basis for sensory rhodopsin function. BIOCHIMICA ET BIOPHYSICA ACTA 2002;1565:196-205. [PMID: 12409195 DOI: 10.1016/s0005-2736(02)00569-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
24
Spudich JL, Luecke H. Sensory rhodopsin II: functional insights from structure. Curr Opin Struct Biol 2002;12:540-6. [PMID: 12163079 DOI: 10.1016/s0959-440x(02)00359-7] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
25
Sudo Y, Iwamoto M, Shimono K, Kamo N. Association between a photo-intermediate of a M-lacking mutant D75N of pharaonis phoborhodopsin and its cognate transducer. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2002;67:171-6. [PMID: 12167316 DOI: 10.1016/s1011-1344(02)00322-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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