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For: Pokkuluri PR, Raffen R, Dieckman L, Boogaard C, Stevens FJ, Schiffer M. Increasing protein stability by polar surface residues: domain-wide consequences of interactions within a loop. Biophys J 2002;82:391-8. [PMID: 11751325 PMCID: PMC1302478 DOI: 10.1016/s0006-3495(02)75403-9] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
Number Cited by Other Article(s)
1
Yang W, Chen X, Pang L, Tian H, Yang L, Xia B. Deciphering the Catalytic Proficiency and Mechanism of the N-Acetylglucosamine Deacetylase From Pantoea dispersa. Biotechnol Bioeng 2024. [PMID: 39592864 DOI: 10.1002/bit.28894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 11/07/2024] [Accepted: 11/10/2024] [Indexed: 11/28/2024]
2
Ghaedizadeh S, Zeinali M, Dabirmanesh B, Rasekh B, Khajeh K, Banaei-Moghaddam AM. Rational design engineering of a more thermostable Sulfurihydrogenibium yellowstonense carbonic anhydrase for potential application in carbon dioxide capture technologies. BIOCHIMICA ET BIOPHYSICA ACTA. PROTEINS AND PROTEOMICS 2024;1872:140962. [PMID: 37716447 DOI: 10.1016/j.bbapap.2023.140962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 08/18/2023] [Accepted: 09/06/2023] [Indexed: 09/18/2023]
3
Mitra D, Das Mohapatra PK. In silico comparative structural and compositional analysis of glycoproteins of RSV to study the nature of stability and transmissibility of RSV A. SYSTEMS MICROBIOLOGY AND BIOMANUFACTURING 2022;3:312-327. [PMID: 38013803 PMCID: PMC9135598 DOI: 10.1007/s43393-022-00110-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 05/07/2022] [Accepted: 05/08/2022] [Indexed: 11/29/2022]
4
Cui H, Vedder M, Zhang L, Jaeger K, Schwaneberg U, Davari MD. Polar Substitutions on the Surface of a Lipase Substantially Improve Tolerance in Organic Solvents. CHEMSUSCHEM 2022;15:e202102551. [PMID: 35007408 PMCID: PMC9305861 DOI: 10.1002/cssc.202102551] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 01/10/2022] [Indexed: 06/09/2023]
5
Effect of Met/Leu substitutions on the stability of NAD+-dependent formate dehydrogenases from Gossypium hirsutum. Appl Microbiol Biotechnol 2021;105:2787-2798. [PMID: 33754169 DOI: 10.1007/s00253-021-11232-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 02/24/2021] [Accepted: 03/10/2021] [Indexed: 10/21/2022]
6
Morgan GJ, Wall JS. The Process of Amyloid Formation due to Monoclonal Immunoglobulins. Hematol Oncol Clin North Am 2020;34:1041-1054. [PMID: 33099422 DOI: 10.1016/j.hoc.2020.07.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
7
The Role of Surface Exposed Lysine in Conformational Stability and Functional Properties of Lipase from Staphylococcus Family. Molecules 2020;25:molecules25173858. [PMID: 32854267 PMCID: PMC7504586 DOI: 10.3390/molecules25173858] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 07/29/2020] [Accepted: 07/30/2020] [Indexed: 11/17/2022]  Open
8
Nutschel C, Fulton A, Zimmermann O, Schwaneberg U, Jaeger KE, Gohlke H. Systematically Scrutinizing the Impact of Substitution Sites on Thermostability and Detergent Tolerance for Bacillus subtilis Lipase A. J Chem Inf Model 2020;60:1568-1584. [PMID: 31905288 DOI: 10.1021/acs.jcim.9b00954] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
9
Menon BRK, Latham J, Dunstan MS, Brandenburger E, Klemstein U, Leys D, Karthikeyan C, Greaney MF, Shepherd SA, Micklefield J. Structure and biocatalytic scope of thermophilic flavin-dependent halogenase and flavin reductase enzymes. Org Biomol Chem 2018;14:9354-9361. [PMID: 27714222 DOI: 10.1039/c6ob01861k] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
10
Zhou T, Erber L, Liu B, Gao Y, Ruan HB, Chen Y. Proteomic analysis reveals diverse proline hydroxylation-mediated oxygen-sensing cellular pathways in cancer cells. Oncotarget 2018;7:79154-79169. [PMID: 27764789 PMCID: PMC5346705 DOI: 10.18632/oncotarget.12632] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Accepted: 09/25/2016] [Indexed: 12/28/2022]  Open
11
Luna-Martínez OD, Hernández-Santoyo A, Villalba-Velázquez MI, Sánchez-Alcalá R, Fernández-Velasco DA, Becerril B. Stabilizing an amyloidogenic λ6 light chain variable domain. FEBS J 2017;284:3702-3717. [DOI: 10.1111/febs.14265] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 08/14/2017] [Accepted: 09/08/2017] [Indexed: 01/09/2023]
12
Özgün GP, Ordu EB, Tütüncü HE, Yelboğa E, Sessions RB, Gül Karagüler N. Site Saturation Mutagenesis Applications on Candida methylica Formate Dehydrogenase. SCIENTIFICA 2016;2016:4902450. [PMID: 27847673 PMCID: PMC5099451 DOI: 10.1155/2016/4902450] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Revised: 06/25/2016] [Accepted: 08/04/2016] [Indexed: 06/06/2023]
13
Mahon BP, Bhatt A, Socorro L, Driscoll JM, Okoh C, Lomelino CL, Mboge MY, Kurian JJ, Tu C, Agbandje-McKenna M, Frost SC, McKenna R. The Structure of Carbonic Anhydrase IX Is Adapted for Low-pH Catalysis. Biochemistry 2016;55:4642-53. [PMID: 27439028 DOI: 10.1021/acs.biochem.6b00243] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
14
Tekewe A, Connors NK, Middelberg APJ, Lua LHL. Design strategies to address the effect of hydrophobic epitope on stability and in vitro assembly of modular virus-like particle. Protein Sci 2016;25:1507-16. [PMID: 27222486 DOI: 10.1002/pro.2953] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Accepted: 05/20/2016] [Indexed: 11/09/2022]
15
Mao Y, Teoh CL, Yang S, Zlatic CO, Rosenes ZK, Gooley PR, Howlett GJ, Griffin MDW. Charge and charge-pair mutations alter the rate of assembly and structural properties of apolipoprotein C-II amyloid fibrils. Biochemistry 2015;54:1421-8. [PMID: 25609257 DOI: 10.1021/bi5014535] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Improvement of cold adaptation of Bacillus alcalophilus alkaline protease by directed evolution. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.molcatb.2014.05.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
17
Hammami F, Chebaane A, Bahri M, Nasr S. Structural investigations of N-methylformamide-water mixtures at various concentrations. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2013;36:129. [PMID: 24248215 DOI: 10.1140/epje/i2013-13129-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Revised: 09/09/2013] [Accepted: 10/18/2013] [Indexed: 06/02/2023]
18
Engineering and kinetic stabilization of the therapeutic enzyme Anabeana variabilis phenylalanine ammonia lyase. Appl Biochem Biotechnol 2013;171:1805-18. [PMID: 23999738 DOI: 10.1007/s12010-013-0450-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Accepted: 08/15/2013] [Indexed: 10/26/2022]
19
Okanishi H, Kim K, Masui R, Kuramitsu S. Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus. J Proteome Res 2013;12:3952-68. [PMID: 23901841 DOI: 10.1021/pr400245k] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
20
Amini-Bayat Z, Hosseinkhani S, Jafari R, Khajeh K. Relationship between stability and flexibility in the most flexible region of Photinus pyralis luciferase. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2011;1824:350-8. [PMID: 22155276 DOI: 10.1016/j.bbapap.2011.11.003] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2011] [Revised: 11/20/2011] [Accepted: 11/21/2011] [Indexed: 10/14/2022]
21
Lim KH, Huang H, Pralle A, Park S. Engineered Streptavidin Monomer and Dimer with Improved Stability and Function. Biochemistry 2011;50:8682-91. [DOI: 10.1021/bi2010366] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
22
Dey S, Pal A, Chakrabarti P, Janin J. The subunit interfaces of weakly associated homodimeric proteins. J Mol Biol 2010;398:146-60. [PMID: 20156457 DOI: 10.1016/j.jmb.2010.02.020] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2009] [Revised: 02/10/2010] [Accepted: 02/10/2010] [Indexed: 02/07/2023]
23
Friedrich R, Yeheskel A, Ashery U. DOC2B, C2 domains, and calcium: A tale of intricate interactions. Mol Neurobiol 2010;41:42-51. [PMID: 20052564 DOI: 10.1007/s12035-009-8094-8] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2009] [Accepted: 12/09/2009] [Indexed: 11/28/2022]
24
Islam MM, Sohya S, Noguchi K, Kidokoro SI, Yohda M, Kuroda Y. Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations. Proteins 2009;77:962-70. [DOI: 10.1002/prot.22522] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
25
Hu D, Qin Z, Xue B, Fink AL, Uversky VN. Effect of methionine oxidation on the structural properties, conformational stability, and aggregation of immunoglobulin light chain LEN. Biochemistry 2008;47:8665-77. [PMID: 18652490 DOI: 10.1021/bi800806d] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
26
Hong BS, Senisterra G, Rabeh WM, Vedadi M, Leonardi R, Zhang YM, Rock CO, Jackowski S, Park HW. Crystal structures of human pantothenate kinases. Insights into allosteric regulation and mutations linked to a neurodegeneration disorder. J Biol Chem 2007;282:27984-93. [PMID: 17631502 DOI: 10.1074/jbc.m701915200] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
27
Clark RL, Johnston BF, Suckling CJ, Mackay SP. A modelling study of a non-concerted hydrolytic cycloaddition reaction by the catalytic antibody H11. Bioorg Med Chem 2006;14:2674-83. [PMID: 16378728 DOI: 10.1016/j.bmc.2005.11.042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2005] [Revised: 11/23/2005] [Accepted: 11/28/2005] [Indexed: 11/21/2022]
28
Smith AW, Camara-Artigas A, Wang M, Allen JP, Francisco WA. Structure of Phenoxazinone Synthase from Streptomyces antibioticus Reveals a New Type 2 Copper Center,. Biochemistry 2006;45:4378-87. [PMID: 16584173 DOI: 10.1021/bi0525526] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
29
Anil B, Craig-Schapiro R, Raleigh DP. Design of a Hyperstable Protein by Rational Consideration of Unfolded State Interactions. J Am Chem Soc 2006;128:3144-5. [PMID: 16522085 DOI: 10.1021/ja057874b] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
30
McMahon SA, Miller JL, Lawton JA, Kerkow DE, Hodes A, Marti-Renom MA, Doulatov S, Narayanan E, Sali A, Miller JF, Ghosh P. The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol 2005;12:886-92. [PMID: 16170324 DOI: 10.1038/nsmb992] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2005] [Accepted: 08/02/2005] [Indexed: 11/09/2022]
31
Huang DB, Vu D, Ghosh G. NF-κB RelB Forms an Intertwined Homodimer. Structure 2005;13:1365-73. [PMID: 16154093 DOI: 10.1016/j.str.2005.06.018] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2005] [Revised: 06/14/2005] [Accepted: 06/15/2005] [Indexed: 11/22/2022]
32
Pradeep L, Udgaonkar JB. Effect of Salt on the Urea-Unfolded Form of Barstar Probed bymValue Measurements†. Biochemistry 2004;43:11393-402. [PMID: 15350126 DOI: 10.1021/bi049320b] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Tareste D, Pincet F, Perez E, Rickling S, Mioskowski C, Lebeau L. Energy of hydrogen bonds probed by the adhesion of functionalized lipid layers. Biophys J 2002;83:3675-81. [PMID: 12496134 PMCID: PMC1302442 DOI: 10.1016/s0006-3495(02)75367-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
34
van den Burg B, Eijsink VGH. Selection of mutations for increased protein stability. Curr Opin Biotechnol 2002;13:333-7. [PMID: 12323355 DOI: 10.1016/s0958-1669(02)00325-7] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
35
Pokkuluri PR, Gu M, Cai X, Raffen R, Stevens FJ, Schiffer M. Factors contributing to decreased protein stability when aspartic acid residues are in beta-sheet regions. Protein Sci 2002;11:1687-94. [PMID: 12070321 PMCID: PMC2373667 DOI: 10.1110/ps.4920102] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2001] [Revised: 03/26/2002] [Accepted: 03/28/2002] [Indexed: 10/14/2022]
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