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For: Bahar I, Jernigan RL. Cooperative structural transitions induced by non-homogeneous intramolecular interactions in compact globular proteins. Biophys J 1994;66:467-81. [PMID: 8161700 PMCID: PMC1275714 DOI: 10.1016/s0006-3495(94)80798-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
Number Cited by Other Article(s)
1
Jernigan RL, Sankar K, Jia K, Faraggi E, Kloczkowski A. Computational Ways to Enhance Protein Inhibitor Design. Front Mol Biosci 2021;7:607323. [PMID: 33614705 PMCID: PMC7886686 DOI: 10.3389/fmolb.2020.607323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 12/08/2020] [Indexed: 11/22/2022]  Open
2
The use of experimental structures to model protein dynamics. Methods Mol Biol 2015;1215:213-36. [PMID: 25330965 DOI: 10.1007/978-1-4939-1465-4_10] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
3
Skolnick J, Kolinski A. Monte Carlo Approaches to the Protein Folding Problem. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141649.ch7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
4
Kloczkowski A, Sen TZ, Jernigan RL. The transfer matrix method for lattice proteins—an application with cooperative interactions. POLYMER 2004. [DOI: 10.1016/j.polymer.2003.10.072] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
5
Kloczkowski A, Jernigan RL. Transfer matrix method for enumeration and generation of compact self-avoiding walks. I. Square lattices. J Chem Phys 1998. [DOI: 10.1063/1.477128] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
6
Kloczkowski A, Jernigan RL. Efficient Method To Count and Generate Compact Protein Lattice Conformations. Macromolecules 1997. [DOI: 10.1021/ma970662h] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Bahar I, Atilgan AR, Jernigan RL, Erman B. Understanding the recognition of protein structural classes by amino acid composition. Proteins 1997. [DOI: 10.1002/(sici)1097-0134(199710)29:2<172::aid-prot5>3.0.co;2-f] [Citation(s) in RCA: 99] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
8
Jernigan RL, Bahar I. Structure-derived potentials and protein simulations. Curr Opin Struct Biol 1996;6:195-209. [PMID: 8728652 DOI: 10.1016/s0959-440x(96)80075-3] [Citation(s) in RCA: 202] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
9
Govindarajan S, Goldstein RA. Searching for foldable protein structures using optimized energy functions. Biopolymers 1995. [DOI: 10.1002/bip.360360105] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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