Polarized light scattering for rapid observation of bacterial size changes

Applications of Mueller Matrix Polarimetry to Biological and Agricultural Diagnostics: A Review

The review contains a systematization of the main approaches to the practical implementation of Mueller matrix polarimetry and the prospects for its application in biology and agriculture. The most typical optical layouts for measuring the Mueller matrix of various objects, such as disperse systems, tissues and surface structures, are discussed. Mueller matrix measurements, being integrated into standard schemes of conventional optical methods, such as scatterometry, optical coherence tomography, fluorimetry, spectrophotometry and reflectometry, can significantly expand their capabilities in the characterization of biological systems and bioorganic materials. Additionally, microwave Mueller matrix polarimetry can be used for monitoring soil conditions and crop growth. The proposed systematization is aimed at outlining the conceptual directions for the development of non-invasive diagnostic tools based on measuring the Mueller matrix, primarily with a focus on biological research and agricultural practice.

Circular Intensity Differential Scattering for Label-Free Chromatin Characterization: A Review for Optical Microscopy

Circular Intensity Differential Scattering (CIDS) provides a differential measurement of the circular right and left polarized light and has been proven to be a gold standard label-free technique to study the molecular conformation of complex biopolymers, such as chromatin. In early works, it has been shown that the scattering component of the CIDS signal gives information from the long-range chiral organization on a scale down to 1/10th-1/20th of the excitation wavelength, leading to information related to the structure and orientation of biopolymers in situ at the nanoscale. In this paper, we review the typical methods and technologies employed for measuring this signal coming from complex macro-molecules ordering. Additionally, we include a general description of the experimental architectures employed for spectroscopic CIDS measurements, angular or spectral, and of the most recent advances in the field of optical imaging microscopy, allowing a visualization of the chromatin organization in situ.

Sensitivity study on the contribution of scattering by randomly oriented nonspherical hydrosols to linear polarization in clear to semi-turbid shallow waters

The influence of hydrosol nonsphericity on the polarization characteristics of light under water is investigated by combining accurate single-scattering models for randomly oriented spheroidal scatterers with a radiative transfer model that employs Stokes formalism and considers refraction of direct unpolarized solar radiation and 100% linearly polarized radiation at the air-water interface followed by single scattering. Variations in what we call the "linear polarization phase function" (the degree of linear polarization as a function of scattering angle and the angle of linear polarization as a function of scattering angle) are examined for a wide range of spheroid aspect ratios and complex refractive indices of hydrosols. Implications for polarization-sensitive marine organisms and for remote sensing of the marine environment are discussed.

Evidence of Multi-Domain Morphological Structures in Living Escherichia coli

A combination of light-microscopy and image processing was used to elaborate on the fluctuation in the width of the cylindrical part of Escherichia coli at sub-pixel-resolution, and under in vivo conditions. The mean-squared-width-difference along the axial direction of the cylindrical part of a number of bacteria was measured. The results reveal that the cylindrical part of Escherichia coli is composed of multi-domain morphological structures. The length of the domains starts at 150 nm in newborn cells, and linearly increases in length up to 300 nm in aged cells. The fluctuation in the local-cell-widths in each domain is less than the fluctuation of local-cell-widths between different domains. Local cell width correlations along the cell body occur on a length scale of less than 50 nm. This finding could be associated with the flexibility of the cell envelope in the radial versus longitudinal directions.

Polarized light interaction with tissues

This tutorial-review introduces the fundamentals of polarized light interaction with biological tissues and presents some of the recent key polarization optical methods that have made possible the quantitative studies essential for biomedical diagnostics. Tissue structures and the corresponding models showing linear and circular birefringence, dichroism, and chirality are analyzed. As the basis for a quantitative description of the interaction of polarized light with tissues, the theory of polarization transfer in a random medium is used. This theory employs the modified transfer equation for Stokes parameters to predict the polarization properties of single- and multiple-scattered optical fields. The near-order of scatterers in tissues is accounted for to provide an adequate description of tissue polarization properties. Biomedical diagnostic techniques based on polarized light detection, including polarization imaging and spectroscopy, amplitude and intensity light scattering matrix measurements, and polarization-sensitive optical coherence tomography are described. Examples of biomedical applications of these techniques for early diagnostics of cataracts, detection of precancer, and prediction of skin disease are presented. The substantial reduction of light scattering multiplicity at tissue optical clearing that leads to a lesser influence of scattering on the measured intrinsic polarization properties of the tissue and allows for more precise quantification of these properties is demonstrated.

Bacterial shape: two-dimensional questions and possibilities

Events in the past decade have made it both possible and interesting to ask how bacteria create cells of defined length, diameter, and morphology. The current consensus is that bacterial shape is determined by the coordinated activities of cytoskeleton complexes that drive cell elongation and division. Cell length is most easily explained by the timing of cell division, principally by regulating the activity of the FtsZ protein. However, the question of how cells establish and maintain a specific and uniform diameter is, by far, much more difficult to answer. Mutations associated with the elongation complex often alter cell width, though it is not clear how. Some evidence suggests that diameter is strongly influenced by events during cell division. In addition, surprising new observations show that the bacterial cell wall is more highly malleable than previously believed and that cells can alter and restore their shapes by relying only on internal mechanisms.

Biosensors and bio-based methods for the separation and detection of foodborne pathogens

The safety of our food supply is always a major concern to consumers, food producers, and regulatory agencies. A safer food supply improves consumer confidence and brings economic stability. The safety of foods from farm-to-fork through the supply chain continuum must be established to protect consumers from debilitating, sometimes fatal episodes of pathogen outbreaks. The implementation of preventive strategies like hazard analysis critical control points (HACCP) assures safety but its full utility will not be realized unless supportive tools are fully developed. Rapid, sensitive, and accurate detection methods are such essential tools that, when integrated with HACCP, will improve safety of products. Traditional microbiological methods are powerful, error-proof, and dependable but these lengthy, cumbersome methods are often ineffective because they are not compatible with the speed at which the products are manufactured and the short shelf life of products. Automation in detection methods is highly desirable, but is not achievable with traditional methods. Therefore, biosensor-based tools offer the most promising solutions and address some of the modern-day needs for fast and sensitive detection of pathogens in real time or near real time. The application of several biosensor tools belonging to the categories of optical, electrochemical, and mass-based tools for detection of foodborne pathogens is reviewed in this chapter. Ironically, geometric growth in biosensor technology is fueled by the imminent threat of bioterrorism through food, water, and air and by the funding through various governmental agencies.

Light scattering from particles located under a rough dielectric layer

A discussion is presented of the effect of roughness on the detectability of subsurface particles by means of the light-scattering method. We have studied the scattering of light by calibrated spheres located under a slightly rough dielectric surface both experimentally and theoretically. In our experiments, the scattering from slightly rough layers with nonresonant particles was dominated by the roughness, and the scattering diagram did not bear any discernible indications of the spheres. However, at resonance, the subsurface particles manifested themselves by an increase in the total scattered intensity and by well-pronounced maxima in the angular dependence of both the scattering diagram and the backscattered intensity. Theoretical calculations show that the angular positions of the maxima in the scattering diagram are essentially determined by the interference of fields scattered by the particles and by the surface, whereas the contribution of the multiple interparticle scattering is negligible. By contrast, the oscillations in the angular dependence of the backscattered intensity are due primarily to the scattering between neighboring spheres.

Rapid optically based measurements of diameter and length for spherical or rod-shaped bacteria in vivo

The application in light scattering of the Mueller matrix ratio (S34)/(S11) for determining average particle size is extended to a large size parameter range for spherical or randomly oriented rod-shaped particles such as micro-organisms. It is shown that combining the graph of this ratio with a Coulter counter measurement of particle volume gives results in agreement with microscopic measurements. Thus this combination provides a method to measure particle diameter and width simultaneously in real time for elongated particles such as bacteria, which are measured in vivo with this method. An approximate empirical formula is developed to estimate the motion of the extrema in the graph of the oscillating matrix ratio as size changes occur. This formula is also shown to be consistent with wavelength changes.

Polarized light scattering as a rapid and sensitive assay for metal toxicity to bacteria

A new method that utilizes the scattering of polarized light from a suspension of bacteria to assay the effect of toxins is evaluated. The method compares the time dependence of changes in an angular scattering pattern obtained from a suspension of Escherichia coli bacteria with no toxin exposure to the corresponding, but reduced, changes that occur when there is exposure to a small concentration of certain toxicants. The changes are due to growth of a specially prepared population of these bacteria. The changes in the pattern normally reflect a change in average bacterial size due to growth, whereas the reduction of the change in pattern occurs when there is rapid cessation of bacterial growth. The method was tested with varying concentrations of the ions of five different heavy metals. The results using this method during the first few minutes after exposure to the toxicant were compared to the relative survival of colony-forming units of the bacteria. The graphs for the two methods were found to be approximately parallel for each of the five metals examined. This result indicates that the toxic effect of these metals takes place relatively quickly for these bacteria. These results were compared with results available from the literature for the same metals but using other methods for measuring the toxicity to bacteria. Published in 2001 by John Wiley & Sons Ltd.

Individual Escherichia coli cells studied from light scattering with the scanning flow cytometer

BACKGROUND

Flow cytometry is a powerful tool for the analysis of individual particles in a flow. Differential light scattering (an indicatrix) was used for many years to obtain morphologic information about microorganisms. The indicatrices play the same role for individual particle recognition as a spectrum for substance characterization. We combined two techniques to analyze the indicatrix of the cells for the purpose of developing a database of light-scattering functions of cells.

METHODS

The scanning flow cytometer (SFC) allows the measurement of the entire indicatrix of individual particles at polar angles ranging from 5 degrees to 100 degrees. In this work, light-scattering properties of Escherichia coli have been studied both experimentally and theoretically with the SFC and the T-matrix method, respectively. The T-matrix method was used because of the nonspherical shape of E. coli cells, which were modeled by a prolate spheroid.

RESULTS

The indicatrices of E. coli cells were stimulated with T-matrix method at polar angles ranging from 10 degrees to 60 degrees. The absolute cross-section of light scattering of E. coli has been determined comparing the cross section of polystyrene particles modeled by a homogeneous sphere. The E. coli indicatrices were compared for logarithmic and stationary phases of cell growth.

CONCLUSIONS

The indicatrices of E. coli were reproducible and could be used for identification of these cells in biologic suspensions. The angular location of the indicatrix minimum can be used in separation of cells in logarithmic and stationary phases. To use effectively the indicatrices for that purpose, the light-scattering properties of other microorganisms have to be studied.