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Jopa S, Wójcik J, Ejchart A, Nowakowski M. NMR studies of inclusion complexes: naphthalene and natural cyclodextrins. Phys Chem Chem Phys 2022; 24:13690-13697. [PMID: 35611965 DOI: 10.1039/d2cp01152b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Inclusion complexes of naphthalene (NP) with cyclodextrins (CD) have been investigated so far using non-NMR techniques resulting in inconsistent data. Here, the first application of high-field NMR spectroscopy in combination with a precise analysis of the results has allowed us to determine accurately the stoichiometry of complexes and their association constants. Titration measurements have been performed by 1H NMR spectroscopy in D2O at a magnetic field B0 of 18.8 T. NP and αCD form a 1 : 2 complex in which a single NP molecule is closed in a capsule made up of two αCD macrocycles. NP and βCD build coexisting 2 : 1 and 2 : 2 complexes with large binding constants. Larger γCD host molecules form essentially similar complexes with NP as the βCD but corresponding binding constants are smaller.
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Affiliation(s)
- Sylwia Jopa
- Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland.
| | - Jacek Wójcik
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
| | - Andrzej Ejchart
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warszawa, Poland
| | - Michał Nowakowski
- Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland.
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Wójcik J, Ejchart A, Nowakowski M. Shape adaptation of quinine in cyclodextrin cavities: NMR studies. Phys Chem Chem Phys 2019; 21:6925-6934. [DOI: 10.1039/c9cp00590k] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Complex formation between quinine and natural cyclodextrins (CD) was studied using NMR spectroscopy.
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Affiliation(s)
- Jacek Wójcik
- Institute of Biochemistry and Biophysics
- Polish Academy of Sciences
- 02-106 Warszawa
- Poland
| | - Andrzej Ejchart
- Institute of Biochemistry and Biophysics
- Polish Academy of Sciences
- 02-106 Warszawa
- Poland
| | - Michał Nowakowski
- Faculty of Chemistry
- Biological and Chemical Research Centre
- University of Warsaw
- 02-089 Warsaw
- Poland
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Dudzik K, Wojcik J, Ejchart A, Nowakowski M. Size makes a difference: Chiral recognition in complexes of fenchone with cyclodextrins studied by means of NMR titration. Chirality 2017; 29:747-758. [DOI: 10.1002/chir.22747] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Revised: 07/19/2017] [Accepted: 07/21/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Karolina Dudzik
- Faculty of Pharmacy with the Laboratory Medicine Division; Medical University of Warsaw; Warsaw Poland
| | - Jacek Wojcik
- Institute of Biochemistry and Biophysics; Laboratory of Biological NMR; Warsaw Poland
| | - Andrzej Ejchart
- Institute of Biochemistry and Biophysics; Laboratory of Biological NMR; Warsaw Poland
| | - Michał Nowakowski
- Faculty of Chemistry, Biological and Chemical Research Centre; University of Warsaw; Warsaw Poland
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Priotti J, Ferreira MJG, Lamas MC, Leonardi D, Salomon CJ, Nunes TG. First solid-state NMR spectroscopy evaluation of complexes of benznidazole with cyclodextrin derivatives. Carbohydr Polym 2015; 131:90-7. [DOI: 10.1016/j.carbpol.2015.05.045] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2015] [Revised: 05/07/2015] [Accepted: 05/22/2015] [Indexed: 11/29/2022]
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High performance liquid chromatography of structural isomers using a cyclodextrin-poly(allylamine) coated silica column. Chromatographia 2014. [DOI: 10.1007/bf02688063] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Riela S, Lazzara G, Lo Meo P, Guernelli S, D'Anna F, Milioto S, Noto R. Microwave-assisted synthesis of novel cyclodextrin–cucurbituril complexes. Supramol Chem 2011. [DOI: 10.1080/10610278.2011.636444] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Serena Riela
- a Dipartimento di Scienze e Tecnologie Molecolari e Biomolecolari (STEMBIO) , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
| | - Giuseppe Lazzara
- b Dipartimento di Chimica “S. Cannizzaro” , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
| | - Paolo Lo Meo
- a Dipartimento di Scienze e Tecnologie Molecolari e Biomolecolari (STEMBIO) , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
| | - Susanna Guernelli
- c Dipartimento di Chimica Organica “A. Mangini” , University of Bologna , Via S. Giacomo 11, 40126 , Bologna , Italy
| | - Francesca D'Anna
- a Dipartimento di Scienze e Tecnologie Molecolari e Biomolecolari (STEMBIO) , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
| | - Stefania Milioto
- b Dipartimento di Chimica “S. Cannizzaro” , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
| | - Renato Noto
- a Dipartimento di Scienze e Tecnologie Molecolari e Biomolecolari (STEMBIO) , University of Palermo , V.le delle Scienze, Parco d'Orleans II, pad. 17, 90128 , Palermo , Italy
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Binding properties of heptakis-(2,6-di-O-methyl)-β-cyclodextrin and mono-(3,6-anhydro)-β-cyclodextrin: a polarimetric study. J INCL PHENOM MACRO 2011. [DOI: 10.1007/s10847-010-9915-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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O'Brien EP, Moyna G. Use of 13C chemical shift surfaces in the study of carbohydrate conformation. Application to cyclomaltooligosaccharides (cyclodextrins) in the solid state and in solution. Carbohydr Res 2004; 339:87-96. [PMID: 14659674 DOI: 10.1016/j.carres.2003.09.034] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The anomeric carbon chemical shifts of free cyclomaltohexaose, -heptaose, -octaose, -decaose, and -tetradecaose (alpha-, beta-, gamma-, epsilon-, and eta-cyclodextrin, respectively), and of alpha-cyclodextrin inclusion complexes, both in the solid state and in solution, were computed using ab initio 13C chemical shift surfaces for the D-Glcp-alpha-(1-->4)-D-Glcp linkage as a function of the glycosidic bond <Phi,Psi> dihedral angles. Chemical shift calculations in the solid state used <Phi,Psi> angle pairs measured from cyclodextrin X-ray structures as input. For estimations in the liquid state two different approaches were employed to account for dynamic averaging. In one, the computed solid-state anomeric carbon chemical shifts for each cyclodextrin D-Glcp monomer were simply averaged to obtain an estimate of the 13C shifts in solution. In the other, chemical shifts for the anomeric carbons were determined by averaging back-calculated 13C shift trajectories derived from a series of 5 ns molecular dynamic simulations for the oligosaccharides with explicit representation of water. Good agreement between calculated and experimental 13C shifts was found in all cases. Furthermore, our results show that the ab initio 13C chemical shift surfaces are sufficiently sensitive to reproduce the small variations observed for the anomeric 13C shifts of the different cyclodextrin D-Glcp units in the solid state with excellent accuracy. The use of chemical shift surfaces as tools in conformational studies of oligosaccharides is discussed.
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Affiliation(s)
- Edward P O'Brien
- Department of Chemistry and Biochemistry, University of the Sciences in Philadelphia, 600 South 43rd Street, Philadelphia, PA 19104-4495, USA
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Rigidity versus flexibility. A review of experimental and theoretical studies pertaining to the cyclodextrin nonrigidity. J Mol Struct 2002. [DOI: 10.1016/s0022-2860(02)00236-3] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Solid-state NMR characterization of cyclomaltoheptaose (?-cyclodextrin) polymers using high-resolution magic angle spinning with gradients. J Appl Polym Sci 2000. [DOI: 10.1002/(sici)1097-4628(20000307)75:10<1288::aid-app10>3.0.co;2-j] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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11
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Okada M, Kamachi M, Harada A. Preparation and Characterization of Inclusion Complexes between Methylated Cyclodextrins and Poly(tetrahydrofuran). Macromolecules 1999. [DOI: 10.1021/ma990806n] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Miyuko Okada
- Graduate School of Science, Osaka University,Toyonaka, Osaka 560-0043, Japan
| | - Mikiharu Kamachi
- Graduate School of Science, Osaka University,Toyonaka, Osaka 560-0043, Japan
| | - Akira Harada
- Graduate School of Science, Osaka University,Toyonaka, Osaka 560-0043, Japan
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Crini G, Cosentino C, Bertini S, Naggi A, Torri G, Vecchi C, Janus L, Morcellet M. Solid state NMR spectroscopy study of molecular motion in cyclomaltoheptaose (beta-cyclodextrin) crosslinked with epichlorohydrin. Carbohydr Res 1998; 308:37-45. [PMID: 9675355 DOI: 10.1016/s0008-6215(98)00077-9] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Dry and hydrated insoluble cyclomaltoheptaose (beta-cyclodextrin, beta-CD) polymers have been investigated by solid state 13C NMR spectroscopy techniques such as cross polarization/magic angle spinning with dipolar decoupling (CP/MAS), magic angle spinning both with (DD-MAS) and without (MAS) dipolar decoupling and CP/MAS dipolar dephasing (dd-CP/MAS) to allow the assignment of the main 13C signals. In the solid state, the presence of water in the samples resulted in a better resolution reflecting increased mobility. Two distinct components (crosslinked beta-CD and polymerized epichlorohydrin) have been found. The molecular mobility of these two components has been analyzed in terms of relaxation parameters such as 13C spin lattice relaxation (T1) and 1H spin lattice relaxation in the rotating frame (T1 rho). The T1 values of the polymers show that the beta-CD trapped inside the polymers does not seem to undergo changes in its mobility whatever the amount of epichlorohydrin. The addition of water to beta-CD significantly increases the T1 values reflecting strong interaction between beta-CD and the solvent. The T1P values obtained reflect the homogeneous nature of the materials.
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Affiliation(s)
- G Crini
- Istituo Scientifico di Chimica e Biochimica G. Ronzoni, Milan, Italy.
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Solid state polycondensation within cyclodextrin channels leading to watersoluble polyamide rotaxanes. Tetrahedron 1997. [DOI: 10.1016/s0040-4020(97)00980-0] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Sfihi H, Legrand A, Doussot J, Guy A. Solid-state 13C NMR study of β-cyclodextrin/substituted aromatic ketone complexes: evidence for two kinds of complexation of the guest molecules. Colloids Surf A Physicochem Eng Asp 1996. [DOI: 10.1016/0927-7757(96)03614-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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16
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Crini G, Torri G, Lekchiri Y, Martel B, Janus L, Morcellet M. High performance liquid chromatography of structural isomers using a cyclodextrin-poly(allylamine) coated silica column. Chromatographia 1995. [DOI: 10.1007/bf02318617] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Heyes SJ, Clayden NJ, Dobson CM. 13C-CP/MAS NMR studies of the cyclomalto-oligosaccharide (cyclodextrin) hydrates. Carbohydr Res 1992; 233:1-14. [PMID: 1446302 DOI: 10.1016/s0008-6215(00)90916-9] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The 13C-CP/MAS NMR spectra of cyclomaltohexaose (alpha-cyclodextrin) hexahydrate, cyclomaltoheptaose (beta-cyclodextrin) "undecahydrate", cyclomalto-octaose (gamma-cyclodextrin) "octadecahydrate", and of the same materials at lower levels of hydration are compared with solution NMR data, structures obtained from single crystal diffraction studies, and with previous reports of the 13C-CP/MAS NMR spectra. The chemical shifts of the C-1 and C-4 resonances can be correlated with the conformation about the (1----4) linkage. The chemical shifts of the C-6 resonances are also sensitive to hydrogen-bonding interactions, as shown by the spectral changes on loss of water from the structures. The results suggest that, for resonances of carbon atoms close to a centre of significant conformational change, chemical shifts may be predicted on the basis of conformation alone, but for the resonances of more distant atoms, changes in chemical shift due to conformational change may be masked by the effects of alterations in the local environment.
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Affiliation(s)
- S J Heyes
- Inorganic Chemistry Laboratory, University of Oxford, United Kingdom
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Ripmeester JA, Ratcliffe CI, Cameron IG. Molecular motion in solid p-nitrophenol inclusion compounds of cyclomalto-hexaose and -heptaose: n.m.r. and dielectric studies. Carbohydr Res 1989. [DOI: 10.1016/0008-6215(89)85166-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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22
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13C-C.p.-m.a.s. n.m.r. studies of frozen solutions of (1→4)-α-d-glucans as a probe of the range of conformations of glycosidic linkages: The conformations of cyclomaltohexaose and amylopectin in aqueous solution. Carbohydr Res 1988. [DOI: 10.1016/0008-6215(88)80052-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Imberty A, Chanzy H, Pérez S, Buléon A, Tran V. The double-helical nature of the crystalline part of A-starch. J Mol Biol 1988; 201:365-78. [PMID: 3418703 DOI: 10.1016/0022-2836(88)90144-1] [Citation(s) in RCA: 404] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
A new three-dimensional structure of the crystalline part of A-starch is described in which the unit cell contains 12 glucose residues located in two left-handed, parallel-stranded double helices packed in a parallel fashion; four water molecules are located between these helices. Chains are crystallized in a monoclinic lattice with a = 2.124 nm, b = 1.172 nm, c = 1.069 nm and gamma = 123.5 degrees, the c axis being parallel to the helix axis. Systematic absences are consistent with the space group B2. The structure was derived from joint use of electron diffraction of single crystals, X-ray powder patterns decomposed into individual peaks and previously reported X-ray fibre diffraction data after adequate re-indexing. The repeating unit consists of a maltotriose moiety where the glucose residues have the 4C1 pyranose conformation and are alpha(1----4) linked. The conformation of the glycosidic linkage is characterized by torsion angles (phi, psi) which take the values (91.8, -153.2), (85.7, -145.3) and 91.8, -151.3); all the primary hydroxyl groups exist in a gauche-gauche conformation. There are no intramolecular hydrogen bonds. Within the double helix, interstrand stabilization is achieved without any steric conflict and through the occurrence of O(2)...O(6) type hydrogen bonds. The present structure is consistent with both physicochemical and biochemical aspects of the crystalline component of the cereal starch granules.
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Affiliation(s)
- A Imberty
- Centre de Recherche sur les Macromolécules Végétales, C.N.R.S., Saint-Martin d'Hères, France
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Variable temperature CP/MAS13C NMR study of cyclodextrin complexes of benzaldehyde. ACTA ACUST UNITED AC 1988. [DOI: 10.1007/bf00659366] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Yamamoto Y, Onda M, Takahashi Y, Inoue Y, Chûjô R. Two-dimensional n.m.r. spectra of O -methylated cyclomalto-oligosaccharides: assignment of 1 H and 13 C resonances and conformational analysis. Carbohydr Res 1987. [DOI: 10.1016/s0008-6215(00)90907-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Tanner S, Ring S, Whittam M, Belton P. High resolution solid state 13C n.m.r. study of some α(1–4) linked glucans: the influence of water on structure and spectra. Int J Biol Macromol 1987. [DOI: 10.1016/0141-8130(87)90056-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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C.P.-D.D.-M.A.S. 13 C-N.M.R. investigations of anhydrous and hydrated cyclomalto-oligosaccharides: The role of water of hydration. Carbohydr Res 1987. [DOI: 10.1016/0008-6215(87)80041-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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29
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Geometry of ?-cyclodextrin inclusion complex with m-nitrophenol deduced from quantum chemical analysis of carbon-13 chemical shifts. ACTA ACUST UNITED AC 1987. [DOI: 10.1007/bf00656402] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Chanzy H, Henrissat B, Vincendon M, Tanner SF, Belton PS. Solid-state 13C-N.M.R. and electron microscopy study on the reversible cellulose I→cellulose IIII transformation in Valonia. Carbohydr Res 1987. [DOI: 10.1016/0008-6215(87)80299-9] [Citation(s) in RCA: 69] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Inoue Y, Kuan FH, Chûjô R. C.P.-M.A.S. 13C-N.M.R. study of some solid-state inclusion complexes of cyclomalto-oligosaccharides with para-substituted benzenes. Carbohydr Res 1987. [DOI: 10.1016/s0008-6215(00)90001-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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32
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Kuan FH, Inoue Y, Ch�j� R. Structure and molecular dynamics of solid-state inclusion complexes of cyclodextrin and permethylated cyclodextrin with benzaldehyde studied by high-resolution CP/MAS13C NMR. ACTA ACUST UNITED AC 1986. [DOI: 10.1007/bf00658002] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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33
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Inoue Y, Takahashi Y, Chûjô R. One- and two-dimensional high-resolution 1H-n.m.r. spectra of permethylated cyclomaltohexaose and cyclomaltoheptaose: spectral assignments and conformational analysis. Carbohydr Res 1986. [DOI: 10.1016/0008-6215(86)80041-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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