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Maity P, Nandi AK, Manna DK, Pattanayak M, Sen IK, Bhanja SK, Samanta S, Panda BC, Paloi S, Acharya K, Islam SS. Structural characterization and antioxidant activity of a glucan from Meripilus giganteus. Carbohydr Polym 2017; 157:1237-1245. [DOI: 10.1016/j.carbpol.2016.11.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Revised: 10/28/2016] [Accepted: 11/02/2016] [Indexed: 12/22/2022]
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Tang Y, Kim H, Singh AK, Aroonnual A, Bae E, Rajwa B, Fratamico PM, Bhunia AK. Light scattering sensor for direct identification of colonies of Escherichia coli serogroups O26, O45, O103, O111, O121, O145 and O157. PLoS One 2014; 9:e105272. [PMID: 25136836 PMCID: PMC4138183 DOI: 10.1371/journal.pone.0105272] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Accepted: 07/18/2014] [Indexed: 12/16/2022] Open
Abstract
Background Shiga-toxin producing Escherichia coli (STEC) have emerged as important foodborne pathogens, among which seven serogroups (O26, O45, O103, O111, O121, O145, O157) are most frequently implicated in human infection. The aim was to determine if a light scattering sensor can be used to rapidly identify the colonies of STEC serogroups on selective agar plates. Methodology/Principal Findings Initially, a total of 37 STEC strains representing seven serovars were grown on four different selective agar media, including sorbitol MacConkey (SMAC), Rainbow Agar O157, BBL CHROMagarO157, and R&F E. coli O157:H7, as well as nonselective Brain Heart Infusion agar. The colonies were scanned by an automated light scattering sensor, known as BARDOT (BActerial Rapid Detection using Optical scattering Technology), to acquire scatter patterns of STEC serogroups, and the scatter patterns were analyzed using an image classifier. Among all of the selective media tested, both SMAC and Rainbow provided the best differentiation results allowing multi-class classification of all serovars with an average accuracy of more than 90% after 10–12 h of growth, even though the colony appearance was indistinguishable at that early stage of growth. SMAC was chosen for exhaustive scatter image library development, and 36 additional strains of O157:H7 and 11 non-O157 serovars were examined, with each serogroup producing unique differential scatter patterns. Colony scatter images were also tested with samples derived from pure and mixed cultures, as well as experimentally inoculated food samples. BARDOT accurately detected O157 and O26 serovars from a mixed culture and also from inoculated lettuce and ground beef (10-h broth enrichment +12-h on-plate incubation) in the presence of natural background microbiota in less than 24 h. Conclusions BARDOT could potentially be used as a screening tool during isolation of the most important STEC serovars on selective agar plates from food samples in less than 24 h.
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Affiliation(s)
- Yanjie Tang
- Molecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, United States of America
| | - Huisung Kim
- School of Mechanical Engineering, Purdue University, West Lafayette, Indiana, United States of America
| | - Atul K. Singh
- Molecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, United States of America
| | - Amornrat Aroonnual
- Molecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, United States of America
| | - Euiwon Bae
- School of Mechanical Engineering, Purdue University, West Lafayette, Indiana, United States of America
| | - Bartek Rajwa
- Bindley Bioscience Center, Purdue University, West Lafayette, Indiana, United States of America
| | - Pina M. Fratamico
- USDA-ARS, Eastern Regional Research Center, Wyndmoor, Pennsylvania, United States of America
| | - Arun K. Bhunia
- Molecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, United States of America
- Department of Comparative Pathobiology, Purdue University, West Lafayette, Indiana, United States of America
- * E-mail:
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Maity P, Samanta S, Nandi AK, Sen IK, Paloi S, Acharya K, Islam SS. Structure elucidation and antioxidant properties of a soluble β-d-glucan from mushroom Entoloma lividoalbum. Int J Biol Macromol 2014; 63:140-9. [DOI: 10.1016/j.ijbiomac.2013.10.040] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Revised: 10/22/2013] [Accepted: 10/26/2013] [Indexed: 10/26/2022]
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Samanta S, Nandi AK, Sen IK, Maji PK, Devi KSP, Maiti TK, Islam SS. Structural characterization of an immunoenhancing glucan isolated from a mushroom Macrolepiota dolichaula. Int J Biol Macromol 2013; 61:89-96. [DOI: 10.1016/j.ijbiomac.2013.06.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Revised: 05/22/2013] [Accepted: 06/02/2013] [Indexed: 10/26/2022]
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Bhanja SK, Rout D, Patra P, Nandan CK, Behera B, Maiti TK, Islam SS. Structural studies of an immunoenhancing glucan of an ectomycorrhizal fungus Ramaria botrytis. Carbohydr Res 2013; 374:59-66. [DOI: 10.1016/j.carres.2013.03.023] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2013] [Revised: 03/22/2013] [Accepted: 03/23/2013] [Indexed: 11/26/2022]
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Structure and genetics of the O-antigen of Escherichia coli O158. Carbohydr Res 2011; 346:2274-7. [PMID: 21861990 DOI: 10.1016/j.carres.2011.07.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2011] [Revised: 07/20/2011] [Accepted: 07/21/2011] [Indexed: 11/21/2022]
Abstract
A structure of the O-polysaccharide (O-antigen) of Escherichia coli O158 has been reported (Datta, A. K.; Basu, S.; Roy, N. Carbohydr. Res.1999, 322, 219-227). In this work, we reinvestigated the O158 polysaccharide using sugar analyses, Smith degradation, and (1)H and (13)C NMR spectroscopy and established the following structure, which is at variance with the structure established earlier: [see formula in text]. This structure is in agreement with the predicted functions of genes found in the O-antigen gene cluster of E. coli O158.
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Maity KK, Patra S, Dey B, Bhunia SK, Mandal S, Das D, Majumdar DK, Maiti S, Maiti TK, Islam SS. A heteropolysaccharide from aqueous extract of an edible mushroom, Pleurotus ostreatus cultivar: structural and biological studies. Carbohydr Res 2011; 346:366-72. [DOI: 10.1016/j.carres.2010.10.026] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2010] [Revised: 10/28/2010] [Accepted: 10/29/2010] [Indexed: 11/26/2022]
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Chemical analysis of an immunoenhancing water-soluble polysaccharide of an edible mushroom, Pleurotus florida blue variant. Carbohydr Res 2010; 345:2736-41. [DOI: 10.1016/j.carres.2010.09.032] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2010] [Revised: 09/22/2010] [Accepted: 09/28/2010] [Indexed: 11/20/2022]
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Kabanov DS, Prokhorenko IR. Structural analysis of lipopolysaccharides from Gram-negative bacteria. BIOCHEMISTRY (MOSCOW) 2010; 75:383-404. [PMID: 20618127 DOI: 10.1134/s0006297910040012] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
This review covers data on composition and structure of lipid A, core, and O-polysaccharide of the known lipopolysaccharides from Gram-negative bacteria. The relationship between the structure and biological activity of lipid A is discussed. The data on roles of core and O-polysaccharide in biological activities of lipopolysaccharides are presented. The structural homology of some oligosaccharide sequences of lipopolysaccharides to gangliosides of human cell membranes is considered.
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Affiliation(s)
- D S Kabanov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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Ojha AK, Chandra K, Ghosh K, Islam SS. Glucans from the alkaline extract of an edible mushroom, Pleurotus florida, cv Assam Florida: isolation, purification, and characterization. Carbohydr Res 2010; 345:2157-63. [DOI: 10.1016/j.carres.2010.06.015] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2010] [Revised: 06/04/2010] [Accepted: 06/23/2010] [Indexed: 10/19/2022]
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Panchadhayee R, Misra AK. Synthesis of Tri- and Disaccharide Fragments Related to the O-Antigen of Enteropathogenic Escherichia Coli O158. J Carbohydr Chem 2010. [DOI: 10.1080/07328300903477804] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Rajib Panchadhayee
- a Division of Molecular Medicine , Bose Institute , A.J.C. Bose Centenary Campus, P-1/12, C.I.T. Scheme VII-M, Kolkata, 700054, India
| | - Anup Kumar Misra
- a Division of Molecular Medicine , Bose Institute , A.J.C. Bose Centenary Campus, P-1/12, C.I.T. Scheme VII-M, Kolkata, 700054, India
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Roy SK, Das D, Mondal S, Maiti D, Bhunia B, Maiti TK, Islam SS. Structural studies of an immunoenhancing water-soluble glucan isolated from hot water extract of an edible mushroom, Pleurotus florida, cultivar Assam Florida. Carbohydr Res 2009; 344:2596-601. [DOI: 10.1016/j.carres.2009.09.010] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2009] [Revised: 08/31/2009] [Accepted: 09/09/2009] [Indexed: 11/25/2022]
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Ojha AK, Maiti D, Chandra K, Mondal S, Roy DDSK, Ghosh K, Islam SS. Structural assignment of a heteropolysaccharide isolated from the gum of Cochlospermum religiosum (Katira gum). Carbohydr Res 2008; 343:1222-31. [DOI: 10.1016/j.carres.2008.03.010] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2007] [Revised: 02/29/2008] [Accepted: 03/07/2008] [Indexed: 11/28/2022]
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Structural investigation of a polysaccharide (Fr. I) isolated from the aqueous extract of an edible mushroom, Volvariella diplasia. Carbohydr Res 2008; 343:1071-8. [DOI: 10.1016/j.carres.2008.01.028] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2007] [Revised: 01/19/2008] [Accepted: 01/23/2008] [Indexed: 11/23/2022]
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Roy SK, Chandra K, Ghosh K, Mondal S, Maiti D, Ojha AK, Das D, Mondal S, Chakraborty I, Islam SS. Structural investigation of a heteropolysaccharide isolated from the pods (fruits) of Moringa oleifera (Sajina). Carbohydr Res 2007; 342:2380-9. [PMID: 17709101 DOI: 10.1016/j.carres.2007.07.020] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2007] [Revised: 07/25/2007] [Accepted: 07/26/2007] [Indexed: 11/28/2022]
Abstract
A water-soluble polysaccharide was isolated from the aqueous extract of pods of Moringa oleifera. The polysaccharide contains d-galactose, 6-O-Me-D-galactose, D-galacturonic acid, l-arabinose, and l-rhamnose in a molar ratio of 1:1:1:1:1. On the basis of total hydrolysis, methylation analysis, periodate oxidation, and NMR ((1)H, (13)C, TOCSY, DQF-COSY, NOESY, ROESY, HSQC, and HMBC) studies, the repeating unit of the polysaccharide is established as [structure: see text].
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Affiliation(s)
- Sadhan K Roy
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721102, West Bengal, India
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Rout D, Mondal S, Chakraborty I, Islam SS. The structure of a polysaccharide from Fraction-II of an edible mushroom, Pleurotus florida. Carbohydr Res 2006; 341:995-1002. [PMID: 16546148 DOI: 10.1016/j.carres.2006.02.026] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2005] [Revised: 02/13/2006] [Accepted: 02/22/2006] [Indexed: 11/29/2022]
Abstract
A water-soluble polysaccharide was isolated from Fraction-II of the aqueous extract of the fruit bodies of the mushroom, Pleurotus florida. Compositional analysis, methylation analysis, periodate oxidation study, Smith degradation, and NMR studies (1H, 13C, DQF-COSY, TOCSY, NOESY, HSQC, and HMBC) revealed the presence of the following repeating unit in the polysaccharide: [structure: see text].
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Affiliation(s)
- Dilip Rout
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore, Paschim Medinipur, West Bengal 721 102, India
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Abstract
Escherichia coli is usually a non-pathogenic member of the human colonic flora. However, certain strains have acquired virulence factors and may cause a variety of infections in humans and in animals. There are three clinical syndromes caused by E. coli: (i) sepsis/meningitis; (ii) urinary tract infection and (iii) diarrhoea. Furthermore the E. coli causing diarrhoea is divided into different 'pathotypes' depending on the type of disease, i.e. (i) enterotoxigenic; (ii) enteropathogenic; (iii) enteroinvasive; (iv) enterohaemorrhagic; (v) enteroaggregative and (vi) diffusely adherent. The serotyping of E. coli based on the somatic (O), flagellar (H) and capsular polysaccharide antigens (K) is used in epidemiology. The different antigens may be unique for a particular serogroup or antigenic determinants may be shared, resulting in cross-reactions with other serogroups of E. coli or even with other members of the family Enterobacteriacea. To establish the uniqueness of a particular serogroup or to identify the presence of common epitopes, a database of the structures of O-antigenic polysaccharides has been created. The E. coli database (ECODAB) contains structures, nuclear magnetic resonance chemical shifts and to some extent cross-reactivity relationships. All fields are searchable. A ranking is produced based on similarity, which facilitates rapid identification of strains that are difficult to serotype (if known) based on classical agglutinating methods. In addition, results pertinent to the biosynthesis of the repeating units of O-antigens are discussed. The ECODAB is accessible to the scientific community at http://www.casper.organ.su.se/ECODAB/.
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Affiliation(s)
- Roland Stenutz
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
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Rout D, Mondal S, Chakraborty I, Pramanik M, Islam SS. Chemical analysis of a new (1→3)-, (1→6)-branched glucan from an edible mushroom, Pleurotus florida. Carbohydr Res 2005; 340:2533-9. [PMID: 16169534 DOI: 10.1016/j.carres.2005.08.006] [Citation(s) in RCA: 111] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2004] [Accepted: 08/17/2005] [Indexed: 11/22/2022]
Abstract
A glucan that was soluble in aqueous sodium chloride was isolated from the aqueous extract of the fruiting bodies of Pleurotus florida. On the basis of total hydrolysis, methylation analysis, periodate oxidation, Smith degradation, and NMR studies (1H, 13C, TOCSY, DQF-COSY, NOESY, and HSQC), the structure of the repeating unit of the polysaccharide is established as: This glucan stimulates the phagocytic activity of macrophages.
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Affiliation(s)
- Dilip Rout
- Department of Chemistry and Chemical Technology, Vidyasagar University, Midnapore 721 102, West Bengal, India
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