Molecular packing in self-assembled monolayers of normal alkane on Au(111) surfaces

High-Pressure Scanning Tunneling Microscopy

This is a Review of recent studies on surface structures of crystalline materials in the presence of gases in the mTorr to atmospheric pressure range, which brings surface science into a brand new direction. Surface structure is not only a property of the material but also depends on the environment surrounding it. This Review emphasizes that high/ambient pressure goes hand-in-hand with ambient temperature, because weakly interacting species can be densely covering surfaces at room temperature only when in equilibrium with a sufficiently high gas pressure. At the same time, ambient temperatures help overcome activation barriers that impede diffusion and reactions. Even species with weak binding energy can have residence lifetimes on the surface that allow them to trigger reconstructions of the atomic structure. The consequences of this are far from trivial because under ambient conditions the structure of the surface dynamically adapts to its environment and as a result completely new structures are often formed. This new era of surface science emerged and spread rapidly after the retooling of characterization techniques that happened in the last two decades. This Review is focused on the new surface structures enabled particularly by one of the new tools: high-pressure scanning tunneling microscopy. We will cover several important surfaces that have been intensely scrutinized, including transition metals, oxides, and alloys.

Alkyl-Based Surfactants at a Liquid Mercury Surface: Computer Simulation of Structure, Self-Assembly, and Phase Behavior

Self-assembled organic films on liquid metals feature a very rich phase behavior, which qualitatively differs from the one on crystalline metals. In contrast to conventional crystalline supports, self-assembled alkylthiol monolayers on liquid metals possess a considerably higher degree of molecular order, thus enabling much more robust metal-molecule-semiconductor couplings for organic electronics applications. Yet, compared to crystalline substrates, the self-assembly of organic surfactants on liquid metals has been studied to a much lesser extent. In this Letter we report the first of its kind molecular simulation investigation of alkyl-based surfactants on a liquid mercury surface. The focus of our investigation is the surfactant conformations as a function of surface coverage and surfactant type. First, we consider normal alkanes because these systems set the basis for simulations of all other organic surfactants on liquid mercury. Subsequently, we proceed with the discussion of alkylthiols that are the most frequently used surfactants in the surface science of hybrid organometallic interfaces. Our results indicate a layering transition of normal alkanes as well as alkylthiols from an essentially bare substrate to a completely filled monolayer of laying molecules. As the surface coverage increases further, we observe a partial wetting of the laying monolayer by the bulk phase of alkanes. In the case of alkylthiols, we clearly see the coexistence of molecules in laying-down and standing-up conformations, in which the sulfur headgroups of the thiols are chemically bound to mercury. In the standing-up phase, the headgroups form an oblique lattice. For the first time we were able to explicitly characterize the molecular-scale structure and transitions between phases of alkyl-based surfactants and to demonstrate how the presence of a thiol headgroup qualitatively changes the phase equilibrium and structure in these systems. The observed phenomena are consistent with available direct and indirect experimental evidence.

Self-assembly of trithia-9-crown-3 and octathia-24-crown-8 on Au(111) surfaces

Scanning tunneling microscopy images of trithia-9-crown-3 and octathia-24-crown-8 self-assembled monolayers (SAMs) reveal completely different SAM structures for the two kinds of thiacrown molecules at liquid n-tetradecane/Au(111) interface.

Structure−Function Studies of Modular Aromatics That Form Molecular Organogels

Three urea-based aromatics 1-3, each with distinct steric and electronic characteristics, have been synthesized and their ability to undergo hierarchical assembly and gel organic solvents investigated. We have found that compound 1 promotes the sol-gel phase transition in primary alcohols (from CH3OH to C10H21OH; CGC < 15 mg/mL), while 2 and 3 do not. IR spectroscopy, X-ray powder diffraction (XRPD), and transmission electron microscopy (TEM) measurements show that 1 organizes into "cylinders" in primary alcohols, using three-centered hydrogen bonds and pi-pi aromatic interactions. The cylinders further organize into pairs through interdigitation of the methyl groups of the adjacent aromatic rings. Importantly, the lateral packing of the cylinders is enhanced as the bulk solvent polarity increases providing a mechanism for controlling the material's morphology via the solvophobic effect. Molecular mechanics (Amber) and semiempirical (AM1) calculations suggested similar conformational behavior but distinct electronic properties of 1-3. Thus, pi-deficient 2 without the methyl groups and pi-rich 3 without aromatic nitrogen fail to promote the sol-gel phase transition in alcohols due to their inability to undergo effective hierarchical assembly, which is necessary for the formation of a 3D fibrillar network. In addition, we have found that the ultrasonication of a supersaturated solution of 1 is necessary for the gelation. Presumably, a fast exchange of the aggregates of 1 is assisted with sonic waves to allow for the effective and "error free" assembly wherein an entangled net of fibers capable of encapsulating solvent molecules is formed.

Estimated MP2 and CCSD(T) interaction energies of n-alkane dimers at the basis set limit: Comparison of the methods of Helgaker et al. and Feller

The MP2 (the second-order Møller-Plesset calculation) and CCSD(T) (coupled cluster calculation with single and double substitutions with noniterative triple excitations) interaction energies of all-trans n-alkane dimers were calculated using Dunning's [J. Chem. Phys. 90, 1007 (1989)] correlation consistent basis sets. The estimated MP2 interaction energies of methane, ethane, and propane dimers at the basis set limit [EMP2(limit)] by the method of Helgaker et al. [J. Chem. Phys. 106, 9639 (1997)] from the MP2/aug-cc-pVXZ (X=D and T) level interaction energies are very close to those estimated from the MP2/aug-cc-pVXZ (X=T and Q) level interaction energies. The estimated EMP2(limit) values of n-butane to n-heptane dimers from the MP2/cc-pVXZ (X=D and T) level interaction energies are very close to those from the MP2/aug-cc-pVXZ (X=D and T) ones. The EMP2(limit) values estimated by Feller's [J. Chem. Phys. 96, 6104 (1992)] method from the MP2/cc-pVXZ (X=D, T, and Q) level interaction energies are close to those estimated by the method of Helgaker et al. from the MP2/cc-pVXZ (X=T and Q) ones. The estimated EMP2(limit) values by the method of Helgaker et al. using the aug-cc-pVXZ (X=D and T) are close to these values. The estimated EMP2(limit) of the methane, ethane, propane, n-butane, n-pentane, n-hexane, n-heptane, n-octane, n-nonane, and n-decane dimers by the method of Helgaker et al. are -0.48, -1.35, -2.08, -2.97, -3.92, -4.91, -5.96, -6.68, -7.75, and -8.75 kcal/mol, respectively. Effects of electron correlation beyond MP2 are not large. The estimated CCSD(T) interaction energies of the methane, ethane, propane, and n-butane dimers at the basis set limit by the method of Helgaker et al. (-0.41, -1.22, -1.87, and -2.74 kcal/mol, respectively) from the CCSD(T)/cc-pVXZ (X=D and T) level interaction energies are close to the EMP2(limit) obtained using the same basis sets. The estimated EMP2(limit) values of the ten dimers were fitted to the form m0+m1X (X is 1 for methane, 2 for ethane, etc.). The obtained m0 and m1 (0.595 and -0.926 kcal/mol) show that the interactions between long n-alkane chains are significant. Analysis of basis set effects shows that cc-pVXZ (X=T, Q, or 5), aug-cc-pVXZ (X=D, T, Q, or 5) basis set, or 6-311G** basis set augmented with diffuse polarization function is necessary for quantitative evaluation of the interaction energies between n-alkane chains.