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Krivdin LB. Computational 1 H and 13 C NMR in structural and stereochemical studies. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:733-828. [PMID: 35182410 DOI: 10.1002/mrc.5260] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 02/14/2022] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
Present review outlines the advances and perspectives of computational 1 H and 13 C NMR applied to the stereochemical studies of inorganic, organic, and bioorganic compounds, involving in particular natural products, carbohydrates, and carbonium ions. The first part of the review briefly outlines theoretical background of the modern computational methods applied to the calculation of chemical shifts and spin-spin coupling constants at the DFT and the non-empirical levels. The second part of the review deals with the achievements of the computational 1 H and 13 C NMR in the stereochemical investigation of a variety of inorganic, organic, and bioorganic compounds, providing in an abridged form the material partly discussed by the author in a series of parent reviews. Major attention is focused herewith on the publications of the recent years, which were not reviewed elsewhere.
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Affiliation(s)
- Leonid B Krivdin
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russia
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Quantum Chemical Approaches to the Calculation of NMR Parameters: From Fundamentals to Recent Advances. MAGNETOCHEMISTRY 2022. [DOI: 10.3390/magnetochemistry8050050] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Quantum chemical methods for the calculation of indirect NMR spin–spin coupling constants and chemical shifts are always in progress. They never stay the same due to permanently developing computational facilities, which open new perspectives and create new challenges every now and then. This review starts from the fundamentals of the nonrelativistic and relativistic theory of nuclear magnetic resonance parameters, and gradually moves towards the discussion of the most popular common and newly developed methodologies for quantum chemical modeling of NMR spectra.
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Makulski W, Wilczek M, Jackowski K. 17O and 1H NMR spectral parameters in isolated water molecules. Phys Chem Chem Phys 2018; 20:22468-22476. [PMID: 30137101 DOI: 10.1039/c8cp01748d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Small amounts of water enriched in oxygen-17 were studied by 17O and 1H NMR in binary gaseous mixtures with Xe, Kr, CHF3 and CH3F and CO2. The distinct linear dependences of 17O and 1H chemical shifts and 1J(17O,1H) spin-spin coupling on the density of every gas solvent were measured. After the extrapolation of experimental results to zero density the relevant parameters in the isolated H217O molecule were determined. The same procedure was applied for H216O when its proton chemical shift was analyzed but the secondary isotope effect in the 1H shielding of H217O and H216O molecules was too small for detection. As shown, all the intermolecular effects in nuclear magnetic shielding are negative and these effects are more significant for 17O nuclei than for protons. It is consistent with the appropriate gas-to-liquid shifts of water which also indicate deshielding effects for both the investigated nuclei. On the other hand, the 1J0(17O,1H) coupling constant in H217O, which is completely free from intermolecular interactions, considerably differs from the 1J(17O,1H) experimental values obtained for water in liquid solutions. The present experimental data of the isolated H217O molecule are compared with selected results of shielding and spin-spin coupling calculations available from the literature and with the recent experimental data for a water molecule encapsulated in the C60 fullerene. Additionally, on the basis of actual results the magnetic dipole moment of the 17O nucleus is revalued for greater accuracy.
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Affiliation(s)
- Włodzimierz Makulski
- Laboratory of NMR Spectroscopy, Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warszawa, Poland.
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Faber R, Sauer SPA, Gauss J. Importance of Triples Contributions to NMR Spin-Spin Coupling Constants Computed at the CC3 and CCSDT Levels. J Chem Theory Comput 2017; 13:696-709. [PMID: 27992184 DOI: 10.1021/acs.jctc.6b01003] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present the first analytical implementation of CC3 second derivatives using the spin-unrestricted approach. This allows, for the first time, the calculation of nuclear spin-spin coupling constants (SSCC) relevant to NMR spectroscopy at the CC3 level of theory in a fully analytical manner. CC3 results for the SSCCs of a number of small molecules and their fluorine substituted derivatives are compared with the corresponding coupled cluster singles and doubles (CCSD) results obtained using specialized basis sets. For one-bond couplings the change when going from CCSD to CC3 is typically 1-3%, but much higher corrections were found for 1JCN in FCN, 15.7%, and 1JOF in OF2, 6.4%. The changes vary significantly in the case of multibond couplings, with differences of up to 10%, and even 13.6% for 3JFH in fluoroacetylene. Calculations at the coupled cluster singles, doubles, and triples (CCSDT) level indicate that the most important contributions arising from connected triple excitations in the coupled cluster expansion are accounted for at the CC3 level. Thus, we believe that the CC3 method will become the standard approach for the calculation of reference values of nuclear spin-spin coupling constants.
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Affiliation(s)
- Rasmus Faber
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Jürgen Gauss
- Institut für Physikalische Chemie, Universität Mainz , 55099 Mainz, Germany
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Díez E, Esteban AL, San Fabián J, Galache MP, Casanueva J, Contreras RH. Intramolecular surfaces for vicinal proton–proton coupling constants 3JHH. Mol Phys 2014. [DOI: 10.1080/00268976.2014.891768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Rusakov YY, Krivdin LB. Modern quantum chemical methods for calculating spin–spin coupling constants: theoretical basis and structural applications in chemistry. RUSSIAN CHEMICAL REVIEWS 2013. [DOI: 10.1070/rc2013v082n02abeh004350] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Gryff-Keller A, Kraska-Dziadecka A, Molchanov S, Wodyński A. Shielding and indirect spin-spin coupling tensors in the presence of a heavy atom: an experimental and theoretical study of bis(phenylethynyl)mercury. J Phys Chem A 2012; 116:10615-20. [PMID: 23050748 DOI: 10.1021/jp307828e] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Magnetic shielding and indirect spin-spin coupling phenomena are tensorial properties and both their isotropic and anisotropic parts do affect NMR spectra. The involved interaction tensors, σ and J, can nowadays be theoretically calculated, although the reliability of such methods in the case of anisotropic parameters, Δσ and ΔJ, in systems involving heavy nuclei, yet demands testing. In this communication the results of the experimental and theoretical investigations of bis(phenylethynyl)mercury (I) labeled with (13)C isotope at positions neighboring Hg are reported. The theoretical calculations of molecular geometry and values of NMR parameters for I have been performed by the ZORA/DFT method, including the relativistic scalar and spin-orbit coupling contributions, using the PBE0 functional and TZP (or jcpl) basis set. These values have been confronted with the experimentally measured ones. The isotropic parameters have been measured by the standard (13)C and (199)Hg NMR spectra. The shielding anisotropies for the atoms in the central part of molecule I have been determined in a liquid sample using magnetic relaxation measurements. The relaxation data have been interpreted within the rotational diffusion theory, assuming the symmetrical top reorientation model. The anisotropies of one-bond (13)C-(199)Hg and two-bond (13)C-Hg-(13)C spin-spin couplings have been determined exploiting the temperature-dependent (13)C NMR spectra of I in the ZLI1167 liquid-crystal phase. We have found that our theoretical calculations reproduce experimental values of both isotropic and anisotropic NMR parameters very well.
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Affiliation(s)
- Adam Gryff-Keller
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warszawa, Poland
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Helgaker T, Coriani S, Jørgensen P, Kristensen K, Olsen J, Ruud K. Recent Advances in Wave Function-Based Methods of Molecular-Property Calculations. Chem Rev 2012; 112:543-631. [DOI: 10.1021/cr2002239] [Citation(s) in RCA: 463] [Impact Index Per Article: 38.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Trygve Helgaker
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway
| | - Sonia Coriani
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, Via Giorgieri 1, I-34127 Trieste, Italy
| | - Poul Jørgensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kasper Kristensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Jeppe Olsen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kenneth Ruud
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
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San Fabián J, Díez E, García de la Vega JM, Suardíaz R. Approximating correlation effects in multiconfigurational self-consistent field calculations of spin-spin coupling constants. J Chem Phys 2008; 128:084108. [PMID: 18315034 DOI: 10.1063/1.2834210] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J San Fabián
- Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, E-28049 Madrid, Spain.
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Jackowski K, Kubiszewski M, Wilczek M. 13C and 1H nuclear magnetic shielding and spin–spin coupling constants of 13C-enriched bromomethane in the gas phase. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.04.040] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Helgaker T, Ola B. Lutnæs, Jaszuński M. Density-Functional and Coupled-Cluster Singles-and-Doubles Calculations of the Nuclear Shielding and Indirect Nuclear Spin−Spin Coupling Constants of o-Benzyne. J Chem Theory Comput 2006; 3:86-94. [DOI: 10.1021/ct600234n] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Trygve Helgaker
- Department of Chemistry, University of Durham, South Road, Durham, DH1 3LE, United Kingdom
| | - Ola B. Lutnæs
- Department of Chemistry, University of Oslo, P.O.B. 1033 Blindern, N-0315 Oslo, Norway
| | - Michał Jaszuński
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warszawa, Kasprzaka 44, Poland
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Macięga E, Makulski W, Jackowski K, Blicharska B. Multinuclear NMR studies of gaseous and liquid sevoflurane. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2005.09.038] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Watson MA, Sałek P, Macak P, Jaszuński M, Helgaker T. The calculation of indirect nuclear spin-spin coupling constants in large molecules. Chemistry 2006; 10:4627-39. [PMID: 15378642 DOI: 10.1002/chem.200306065] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
We present calculations of indirect nuclear spin-spin coupling constants in large molecular systems, performed using density functional theory. Such calculations, which have become possible because of the use of linear-scaling techniques in the evaluation of the Coulomb and exchange-correlation contributions to the electronic energy, allow us to study indirect spin-spin couplings in molecules of biological interest, without having to construct artificial model systems. In addition to presenting a statistical analysis of the large number of short-range coupling constants in large molecular systems, we analyse the asymptotic dependence of the indirect nuclear spin-spin coupling constants on the internuclear separation. In particular, we demonstrate that, in a sufficiently large one-electron basis set, the indirect spin-spin coupling constants become proportional to the inverse cube of the internuclear separation, even though the diamagnetic and paramagnetic spin-orbit contributions to the spin-spin coupling constants separately decay as the inverse square of this separation. By contrast, the triplet Fermi contact and spin-dipole contributions to the indirect spin-spin coupling constants decay exponentially and as the inverse cube of the internuclear separation, respectively. Thus, whereas short-range indirect spin-spin coupling constants are usually dominated by the Fermi contact contribution, long-range coupling constants are always dominated by the negative diamagnetic spin-orbit contribution and by the positive paramagnetic spin-orbit contribution, with small spin-dipole and negligible Fermi contact contributions.
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Affiliation(s)
- Mark A Watson
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK
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Kubiszewski M, Makulski W, Jackowski K. 1H, 13C and 19F nuclear magnetic shielding and spin–spin coupling in gaseous trifluoromethane. J Mol Struct 2005. [DOI: 10.1016/j.molstruc.2004.09.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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The NMR indirect nuclear spin–spin coupling constants for some small rigid hydrocarbons: molecular equilibrium values and vibrational corrections. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2003.08.018] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Affiliation(s)
- Alessandro Bagno
- Dipartimento di Scienze Chimiche, Università di Padova, and Istituto per la Tecnologia delle Membrane del CNR, Sezione di Padova, via Marzolo, 1-35131 Padova, Italy
| | - Federico Rastrelli
- Dipartimento di Scienze Chimiche, Università di Padova, and Istituto per la Tecnologia delle Membrane del CNR, Sezione di Padova, via Marzolo, 1-35131 Padova, Italy
| | - Giacomo Saielli
- Dipartimento di Scienze Chimiche, Università di Padova, and Istituto per la Tecnologia delle Membrane del CNR, Sezione di Padova, via Marzolo, 1-35131 Padova, Italy
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Ruden TA, Lutnæs OB, Helgaker T, Ruud K. Vibrational corrections to indirect nuclear spin–spin coupling constants calculated by density-functional theory. J Chem Phys 2003. [DOI: 10.1063/1.1569846] [Citation(s) in RCA: 142] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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