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Simulation Strategies for Calcium Microdomains and Calcium Noise. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2020; 1131:771-797. [DOI: 10.1007/978-3-030-12457-1_31] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Mendez-Balbuena I, Arrieta P, Huidobro N, Flores A, Lemuz-Lopez R, Trenado C, Manjarrez E. Augmenting EEG-global-coherence with auditory and visual noise: Multisensory internal stochastic resonance. Medicine (Baltimore) 2018; 97:e12008. [PMID: 30170407 PMCID: PMC6393074 DOI: 10.1097/md.0000000000012008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
The present investigation documents the electrophysiological occurrence of multisensory internal stochastic resonance (MISR) in the human electroencephalographic (EEG) coherence elicited by auditory and visual noise.We define MISR of EEG coherence as the phenomenon for which an intermediate level of input noise of a sensory modality enhances EEG coherence in response to another noisy sensory modality. Here, EEG coherence is computed by the global weighted coherence (GWC), modulated by quasi-Brownian noise. Specifically, we examined whether a particular level of auditory noise together with constant visual noise (experimental condition 1) and a specified level of visual noise together with constant auditory noise (experimental condition 2), improves EEG's GWC. We compared GWC between ongoing EEG basal activity (BA), zero noise (ZN), optimal noise (ON), and high noise (HN).The data disclosed an intermediate level of input noise that enhances the GWC for the majority of the subjects, thus demonstrating for the first time the occurrence of multisensory internal stochastic resonance (SR) in visuoauditory processing within the central nervous system.
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Affiliation(s)
| | | | | | | | - Rafael Lemuz-Lopez
- Faculty of Computational Sciences, Benemérita Universidad Autónoma de Puebla, Puebla, México
| | - Carlos Trenado
- Department of Psychology and Neurosciences, Translational Neuromodulation Unit, Leibniz Research Centre for Working Environment and Human Factors, Technical University Dortmund, Dortmund, Germany
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Thomas P, Straube AV, Timmer J, Fleck C, Grima R. Signatures of nonlinearity in single cell noise-induced oscillations. J Theor Biol 2013; 335:222-34. [DOI: 10.1016/j.jtbi.2013.06.021] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2013] [Revised: 05/20/2013] [Accepted: 06/18/2013] [Indexed: 01/10/2023]
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Lang X, Li Q. Roles of external noise correlation in optimal intracellular calcium signaling. J Chem Phys 2008; 128:205102. [PMID: 18513045 DOI: 10.1063/1.2920175] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of a minimal calcium model, which is subjected to white noise or colored noise, was investigated. For white noise, coherence of noise-induced calcium oscillations reached a maximum at an optimal noise intensity, characterizing coherence resonance. Higher resonance peaks could be observed at lower noise intensity when a control parameter is tuned to approach a bifurcation point. For colored noise, a maximal coherence of the oscillations was found for suitable values of both the intensity and the correlation time. Moreover, the coherence of the oscillations exhibited two maxima at two values of noise intensity (correlation time) for appropriate noise correlation time (intensity). In addition, a quantitative description of the effects of noise correlation time on the resonance behavior was presented. The resonance behavior, which is induced either by white noise or colored noise, was interpreted by terms of height and relative width of a spectral peak.
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Affiliation(s)
- Xiufeng Lang
- State Key Laboratory of Explosion Science and Technology, Beijing Institute of Technology, Beijing, 100081, People's Republic of China.
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Gosak M, Marhl M, Perc M. Spatial coherence resonance in excitable biochemical media induced by internal noise. Biophys Chem 2007; 128:210-4. [PMID: 17490805 DOI: 10.1016/j.bpc.2007.04.007] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2007] [Revised: 04/18/2007] [Accepted: 04/18/2007] [Indexed: 10/23/2022]
Abstract
We show that in a spatially extended excitable medium, presently modelled with diffusively coupled FitzHugh-Nagumo neurons, internal stochasticity is able to extract a characteristic spatial frequency of waves on the spatial grid. Internal noise is introduced via a stochastic simulation method and is the only agent acting on the system. Remarkably, the spatial periodicity is best pronounced at an intermediate level of internal stochasticity. Thus, the reported phenomenon is an observation of internal noise spatial coherence resonance in excitable biochemical media.
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Affiliation(s)
- Marko Gosak
- Department of Physics, Faculty of Natural Sciences and Mathematics, University of Maribor, Koroska cesta 160, SI-2000 Maribor, Slovenia
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Perc M, Gosak M, Marhl M. From stochasticity to determinism in the collective dynamics of diffusively coupled cells. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.01.065] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Li Q, He H. Signal transduction in a coupled hormone system: selective explicit internal signal stochastic resonance and its control. J Chem Phys 2005; 123:214905. [PMID: 16356068 DOI: 10.1063/1.2135779] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Cooperative interactions of signal transduction and environmental noise are investigated with a coupled hormone system, in which selective explicit internal signal stochastic resonance (EISSR) is observed. More specifically, the large peak of a period-2 oscillation (i.e., a strong signal) is greatly amplified by the environmental noise while the small peak (i.e., a weak signal) does not exhibit cooperative interactions with noise. The EISSR phenomenon could be controlled by adjusting the frequency or amplitude of an external signal and a critical amplitude for external signal is found. Significantly, the maximal signal-to-noise ratio increases almost linearly with the increment of control parameter, despite that the magnitude of the large peak is decreased. In addition, the noise does not alter the fundamental frequencies of the strong signal and the weak signal, which implicates that the system can keep its intrinsic oscillatory state and resist the effect of environmental fluctuations.
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Affiliation(s)
- Qianshu Li
- The Institute for Chemical Physics, Beijing Institute of Technology, Beijing 100081, People's Republic of China.
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Simulation of explicit internal signal stochastic resonance in a qualitative model for intercellular calcium ion oscillations. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.05.053] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Li YP, Li QS. Internal stochastic resonance under two-parameter modulation in intercellular calcium ion oscillations. J Chem Phys 2004; 120:8748-52. [PMID: 15267806 DOI: 10.1063/1.1697377] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Internal stochastic resonance (ISR) in a model of intercellular calcium ion oscillations is investigated under the modulation of two parameters, viz., degree of extracellular stimulation (beta) and leak rate (k(f)). ISR can occur when either beta or k(f) is subjected to a noise. Internal stochastic biresonance (ISBR) can occur when noise is added to the two parameters simultaneously. The distance to the bifurcation point is found to be able to enhance or suppress the ISBR, and to affect the number of peaks of ISR.
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Affiliation(s)
- Ya Ping Li
- School of Science, Beijing Institute of Technology, Beijing 100081, China
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Li QS, Wang P. Internal signal stochastic resonance induced by colored noise in an intracellular calcium oscillations model. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.02.042] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Marhl M, Schuster S. Under what conditions signal transduction pathways are highly flexible in response to external forcing? A case study on calcium oscillations. J Theor Biol 2003; 224:491-500. [PMID: 12957122 DOI: 10.1016/s0022-5193(03)00199-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Sensitivity and flexibility are typical properties of biological systems. These properties are here investigated in a model for simple and complex intracellular calcium oscillations. In particular, the influence of external periodic forcing is studied. The main point of the study is to compare responses of the system in a chaotic regime with those obtained in a regular periodic regime. We show that the response to external signals in terms of the range of synchronization is not significantly different in regular and chaotic Ca2+ oscillations. However, both types of oscillation are highly flexible in regimes with weak dissipation. Therefore, we conclude that dissipation of free energy is a suitable index characterizing flexibility. For biological systems this appears to be of special importance since for thermodynamic reasons, notably in view of low free energy consumption, dissipation should be minimized.
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Affiliation(s)
- Marko Marhl
- Department of Physics, Faculty of Education, University of Maribor, Koroska cesta 160, SI-2000 Maribor, Slovenia.
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Abstract
Sensitivity and flexibility are important properties of biological systems. These properties are here investigated for intracellular calcium oscillations. For a particular model, we comparatively investigate sensitivity and flexibility of regular and chaotic Ca(2+) oscillations. For this model, we obtain two main results. First, sensitivity of the model system to parameter shifting does not depend on the complexity of Ca(2+) oscillations. We observe, however, that both regular and chaotic Ca(2+) oscillations are highly sensitive in regions close to bifurcation points. Second, also flexibility of Ca(2+) oscillations does not significantly depend on the type of Ca(2+) oscillations. Our results show that regular as well as chaotic Ca(2+) oscillations in the studied model are highly flexible in regimes with weak dissipation. Both results are discussed in the sense of possible biological importance.
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Affiliation(s)
- Matjaz Perc
- Department of Physics, Faculty of Education, University of Maribor, Koroska cesta 160, SI-2000, Maribor, Slovenia
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Luchian T, Bancia B, Pavel C, Popa G. BIOMEMBRANE EXCITABILITY STUDIED WITHIN A WIDE-BAND FREQUENCY OF AN INTERACTING EXOGENOUS ELECTRIC FIELD. Electromagn Biol Med 2002. [DOI: 10.1081/jbc-120016003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Manjarrez E, Rojas-Piloni JG, Méndez I, Martínez L, Vélez D, Vázquez D, Flores A. Internal stochastic resonance in the coherence between spinal and cortical neuronal ensembles in the cat. Neurosci Lett 2002; 326:93-6. [PMID: 12057836 DOI: 10.1016/s0304-3940(02)00318-x] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Internal stochastic resonance is a phenomenon in which the coherence of a non-linear system is enhanced by the presence of a particular, non-zero level of noise generated by internal or external sources without a periodic input signal. The aim of this study was to demonstrate the experimental occurrence of internal stochastic resonance in the coherence between spinal and cortical neuronal ensembles. Simultaneous recordings of spinal and cortical evoked potentials were made in the somatosensory system of the anaesthetized cat. Evoked potentials were produced by input noise introduced in the tactile stimulation of the hindpaw skin. Coherence between the spinal and cortical evoked activity recorded during different levels of input noise was calculated. All animals showed distinct internal stochastic resonance like behavior. We found that the mean coherence was an inverted U-like function of the level of input noise with a mean coherence peak of 0.43. To our knowledge, this is the first documented evidence of such phenomenon in an in vivo preparation of the central nervous system.
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Affiliation(s)
- E Manjarrez
- Instituto de Fisiología, Benemérita Universidad Autónoma de Puebla, 14 Sur 6301, Col. San Manuel, Apartado Postal 406, Puebla, Pue. CP 72570, Mexico.
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