A numerical study of the decomposition of chemical waves in a closed system

Emergent reaction-diffusion phenomena in capillary tubes

Pattern formation in the Belousov-Zhabotinsky reaction experiments carried out by filling capillary glass tubes with catalyst-immobilized gel for the reaction is reported. Under unperturbed and oscillatory conditions, helicoidal waves appear spontaneously. Quantitative structural data of those helices are obtained by devising an optical tomography technique for extracting rotationally symmetric structures from time-lapse data. Space-time representation of the catalyst oxidation reveals wave transmission phenomenon that is studied further by numerical simulations of a reduced spatial model.

Entropy production in a two-dimensional reversible Gray-Scott system

The entropy production sigma is calculated in the time evolution processes toward a Turing-like pattern and a chaotic pattern in a two-dimensional reaction-diffusion system. The contributions of reaction and diffusion to the entropy production are evaluated separately. Though its contribution to total sigma is about 5%, the entropy production in diffusion foretells the moving direction of the dots (reaction spots) and the line-shaped patterns. The entropy production of the entire system sigma depicts well the cooperative dynamics and evolution of chaotic dot patterns. It is suggested that sigma can be a scalar measure for quantitative studies of hierarchic pattern dynamics. The relation is also discussed between the bifurcation parameter and the distance from thermodynamic equilibrium.

Three-variable reversible Gray–Scott model

Even though the field of nonequilibrium thermodynamics has been popular and its importance has been suggested by Demirel and Sandler [J. Phys. Chem. B 108, 31 (2004)], there are only a few investigations of reaction-diffusion systems from the aspect of thermodynamics. A possible reason is that model equations are complicated and difficult to analyze because the corresponding chemical reactions need to be reversible for thermodynamical calculations. Here, we introduce a simple model for calculation of entropy production rate: a three-variable reversible Gray-Scott model. The rate of entropy production in self-replicating pattern formation is calculated, and the results are compared with those reported based on the Brusselator model in the context of biological cell division.

Oscillatory amplification of stochastic resonance in excitable systems

We study systems which combine both oscillatory and excitable properties, and hence intrinsically possess two internal frequencies, responsible for standard spiking and for small amplitude oscillatory limit cycles (Canard orbits). We show that in such a system the effect of stochastic resonance can be amplified by application of an additional high-frequency signal, which is in resonance with the oscillatory frequency. It is important that for this amplification one needs much lower noise intensities as for conventional stochastic resonance in excitable systems.