Separation of tubulin subunits by reversed-phase high-performance liquid chromatography

Electrophoretic resolution of tubulin and tektin subunits by differential interaction with long-chain alkyl sulfates

Tubulin dimers, formed from globular alpha and beta subunits, and the tektins, three equimolar alpha-helical proteins that form filaments, mutually associate to form the junctional regions of doublet and triplet microtubules. When evaluated by SDS-PAGE, the apparent molecular weights of these proteins can deviate substantially from their sequence molecular weights in a manner sensitive to both the source of SDS and the species of origin. The electrophoretic mobility of sperm tail flagellar tubulins and tektins from an echinoderm and a mollusc were studied systematically using detergent-free stacking and resolving gels with a running buffer containing pure sodium dodecyl sulfate augmented with fixed amounts of C10, C14, C16, or C18 alkyl sulfates. Although having no systematic effect on molecular weight standards, the presence of alkyl sulfates of increasing chain length progressively exaggerated the separation of tubulin subunits, similarly facilitated the separation of two normally comigrating tektins, yet minimally influenced the relative migration of adequately separated tektins. This phenomenon is most likely due to preferential binding of longer chain alkyl sulfates by specific hydrophobic regions of these otherwise similar proteins. The use of binary mixtures of pure alkyl sulfates, required in the running buffer alone, may prove useful for reproducibly separating other proteins that characteristically bind SDS anomalously.

Effect of guanine nucleotides on the hydrophobic interaction of tubulin

The influence of guanine nucleotides on the binding of tubulin to hydrophobic components is investigated. Tubulin binds to a hydrophobic phenyl-Sepharose gel in a reversible, nucleotide-dependent way. Assembly-competent tubulin is released with ion-free water as eluent. It contains one guanosine triphosphate per dimer. More denatured tubulin needs a mixture of ethanol-water to elute. Consequently, hydrophobic interaction chromatography over phenyl-Sepharose represents an easy method for preparing polymerizable tubulin free of nucleotides at the exchangeable sites. While, in the absence of guanine nucleotide, the binding of tubulin to phenyl-Sepharose is rapid and immediately reversible on nucleotide addition, the binding of the nucleotide-dependent hydrophobic sites of tubulin to 1,8-ANS is slow, and its dissociation on nucleotide addition is poor. No differences are observed between the shielding of hydrophobic sites in the presence of GTP or GDP. Neither inorganic phosphate nor A1F4- is found to directly influence guanine nucleotides in their ability to shield hydrophobic sites.