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For: Gerdeman MS, Henkin TM, Hines JV. Solution structure of the Bacillus subtilis T-box antiterminator RNA: seven nucleotide bulge characterized by stacking and flexibility. J Mol Biol 2003;326:189-201. [PMID: 12547201 DOI: 10.1016/s0022-2836(02)01339-6] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Number Cited by Other Article(s)
1
Hossain MI, Myers M, Herath D, Aldhumani AH, Boesger H, Hines JV. 4-Aminoquinolines modulate RNA structure and function: Pharmacophore implications of a conformationally restricted polyamine. Biochem Biophys Res Commun 2023;644:55-61. [PMID: 36630735 PMCID: PMC10473465 DOI: 10.1016/j.bbrc.2022.12.080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 12/28/2022] [Indexed: 12/30/2022]
2
Streptococcus suis TrpX is part of a tryptophan uptake system, and its expression is regulated by a T-box regulatory element. Sci Rep 2022;12:13920. [PMID: 35978073 PMCID: PMC9382623 DOI: 10.1038/s41598-022-18227-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 08/08/2022] [Indexed: 11/25/2022]  Open
3
Giarimoglou N, Kouvela A, Patsi I, Zhang J, Stamatopoulou V, Stathopoulos C. Lineage-specific insertions in T-box riboswitches modulate antibiotic binding and action. Nucleic Acids Res 2022;50:5834-5849. [PMID: 35580054 PMCID: PMC9177973 DOI: 10.1093/nar/gkac359] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 04/21/2022] [Accepted: 05/11/2022] [Indexed: 01/27/2023]  Open
4
tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch. CRYSTALS 2022. [DOI: 10.3390/cryst12050694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
5
Marchand JA, Pierson Smela MD, Jordan THH, Narasimhan K, Church GM. TBDB: a database of structurally annotated T-box riboswitch:tRNA pairs. Nucleic Acids Res 2021;49:D229-D235. [PMID: 32882008 PMCID: PMC7778990 DOI: 10.1093/nar/gkaa721] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 08/01/2020] [Accepted: 08/21/2020] [Indexed: 11/26/2022]  Open
6
Zhang J. Unboxing the T-box riboswitches-A glimpse into multivalent and multimodal RNA-RNA interactions. WILEY INTERDISCIPLINARY REVIEWS-RNA 2020;11:e1600. [PMID: 32633085 PMCID: PMC7583486 DOI: 10.1002/wrna.1600] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 04/25/2020] [Accepted: 04/29/2020] [Indexed: 12/17/2022]
7
Li S, Su Z, Lehmann J, Stamatopoulou V, Giarimoglou N, Henderson FE, Fan L, Pintilie GD, Zhang K, Chen M, Ludtke SJ, Wang YX, Stathopoulos C, Chiu W, Zhang J. Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nat Struct Mol Biol 2019;26:1094-1105. [PMID: 31740854 PMCID: PMC6899168 DOI: 10.1038/s41594-019-0326-7] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 10/07/2019] [Indexed: 12/11/2022]
8
Suddala KC, Zhang J. An evolving tale of two interacting RNAs-themes and variations of the T-box riboswitch mechanism. IUBMB Life 2019;71:1167-1180. [PMID: 31206978 DOI: 10.1002/iub.2098] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 05/10/2019] [Indexed: 01/10/2023]
9
The T-Box Riboswitch: tRNA as an Effector to Modulate Gene Regulation. Microbiol Spectr 2019;6. [PMID: 30051797 DOI: 10.1128/microbiolspec.rwr-0028-2018] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
10
Chetnani B, Mondragón A. Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly. Nucleic Acids Res 2017;45:8079-8090. [PMID: 28531275 PMCID: PMC5570125 DOI: 10.1093/nar/gkx451] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 05/03/2017] [Accepted: 05/08/2017] [Indexed: 11/26/2022]  Open
11
Fang X, Michnicka M, Zhang Y, Wang YX, Nikonowicz EP. Capture and Release of tRNA by the T-Loop Receptor in the Function of the T-Box Riboswitch. Biochemistry 2017;56:3549-3558. [PMID: 28621923 PMCID: PMC5813812 DOI: 10.1021/acs.biochem.7b00284] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Liu J, Zeng C, Hogan V, Zhou S, Monwar MM, Hines JV. Identification of Spermidine Binding Site in T-box Riboswitch Antiterminator RNA. Chem Biol Drug Des 2015;87:182-9. [PMID: 26348362 DOI: 10.1111/cbdd.12660] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Revised: 07/24/2015] [Accepted: 08/14/2015] [Indexed: 01/08/2023]
13
Apostolidi M, Saad NY, Drainas D, Pournaras S, Becker HD, Stathopoulos C. A glyS T-box riboswitch with species-specific structural features responding to both proteinogenic and nonproteinogenic tRNAGly isoacceptors. RNA (NEW YORK, N.Y.) 2015;21:1790-806. [PMID: 26276802 PMCID: PMC4574755 DOI: 10.1261/rna.052712.115] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Accepted: 07/13/2015] [Indexed: 06/04/2023]
14
Tomcho JC, Tillman MR, Znosko BM. Improved Model for Predicting the Free Energy Contribution of Dinucleotide Bulges to RNA Duplex Stability. Biochemistry 2015;54:5290-6. [PMID: 26286708 DOI: 10.1021/acs.biochem.5b00474] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
15
Factors that influence T box riboswitch efficacy and tRNA affinity. Bioorg Med Chem 2015. [PMID: 26220520 DOI: 10.1016/j.bmc.2015.07.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
16
Zhang J, Ferré-D'Amaré AR. Structure and mechanism of the T-box riboswitches. WILEY INTERDISCIPLINARY REVIEWS-RNA 2015;6:419-33. [PMID: 25959893 DOI: 10.1002/wrna.1285] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2015] [Revised: 03/19/2015] [Accepted: 03/25/2015] [Indexed: 01/11/2023]
17
T box riboswitches in Actinobacteria: translational regulation via novel tRNA interactions. Proc Natl Acad Sci U S A 2015;112:1113-8. [PMID: 25583497 DOI: 10.1073/pnas.1424175112] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
18
Fluorescence assays for monitoring RNA-ligand interactions and riboswitch-targeted drug discovery screening. Methods Enzymol 2014;550:363-83. [PMID: 25605395 DOI: 10.1016/bs.mie.2014.10.040] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
19
Zhang J, Ferré-D'Amaré AR. Direct evaluation of tRNA aminoacylation status by the T-box riboswitch using tRNA-mRNA stacking and steric readout. Mol Cell 2014;55:148-55. [PMID: 24954903 DOI: 10.1016/j.molcel.2014.05.017] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2013] [Revised: 03/28/2014] [Accepted: 04/08/2014] [Indexed: 01/01/2023]
20
Murray MH, Hard JA, Znosko BM. Improved model to predict the free energy contribution of trinucleotide bulges to RNA duplex stability. Biochemistry 2014;53:3502-8. [PMID: 24853497 PMCID: PMC4051427 DOI: 10.1021/bi500204e] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
21
Henkin TM. The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2014;1839:959-963. [PMID: 24816551 DOI: 10.1016/j.bbagrm.2014.04.022] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Revised: 04/25/2014] [Accepted: 04/28/2014] [Indexed: 12/23/2022]
22
T box RNA decodes both the information content and geometry of tRNA to affect gene expression. Proc Natl Acad Sci U S A 2013;110:7240-5. [PMID: 23589841 PMCID: PMC3645572 DOI: 10.1073/pnas.1222214110] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
23
Jentzsch F, Hines JV. Interfacing medicinal chemistry with structural bioinformatics: implications for T box riboswitch RNA drug discovery. BMC Bioinformatics 2012;13 Suppl 2:S5. [PMID: 22536868 PMCID: PMC3375634 DOI: 10.1186/1471-2105-13-s2-s5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]  Open
24
Zhou S, Means JA, Acquaah-Harrison G, Bergmeier SC, Hines JV. Characterization of a 1,4-disubstituted 1,2,3-triazole binding to T box antiterminator RNA. Bioorg Med Chem 2011;20:1298-302. [PMID: 22230198 DOI: 10.1016/j.bmc.2011.12.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2011] [Revised: 12/05/2011] [Accepted: 12/10/2011] [Indexed: 10/14/2022]
25
Zhou S, Acquaah-Harrison G, Bergmeier SC, Hines JV. Anisotropy studies of tRNA-T box antiterminator RNA complex in the presence of 1,4-disubstituted 1,2,3-triazoles. Bioorg Med Chem Lett 2011;21:7059-63. [PMID: 22001091 DOI: 10.1016/j.bmcl.2011.09.095] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2011] [Revised: 09/21/2011] [Accepted: 09/22/2011] [Indexed: 10/17/2022]
26
Orac CM, Zhou S, Means JA, Boehm D, Bergmeier SC, Hines JV. Synthesis and stereospecificity of 4,5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA. J Med Chem 2011;54:6786-95. [PMID: 21812425 DOI: 10.1021/jm2006904] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
27
Maciagiewicz I, Zhou S, Bergmeier SC, Hines JV. Structure-activity studies of RNA-binding oxazolidinone derivatives. Bioorg Med Chem Lett 2011;21:4524-7. [PMID: 21733684 DOI: 10.1016/j.bmcl.2011.05.130] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2011] [Revised: 05/27/2011] [Accepted: 05/31/2011] [Indexed: 10/18/2022]
28
Wang J, Henkin TM, Nikonowicz EP. NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA. Nucleic Acids Res 2010;38:3388-98. [PMID: 20110252 PMCID: PMC2879506 DOI: 10.1093/nar/gkq020] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
29
Smith AM, Fuchs RT, Grundy FJ, Henkin TM. Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal. RNA Biol 2010;7:104-10. [PMID: 20061810 DOI: 10.4161/rna.7.1.10757] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
30
Green NJ, Grundy FJ, Henkin TM. The T box mechanism: tRNA as a regulatory molecule. FEBS Lett 2009;584:318-24. [PMID: 19932103 DOI: 10.1016/j.febslet.2009.11.056] [Citation(s) in RCA: 110] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2009] [Revised: 11/13/2009] [Accepted: 11/16/2009] [Indexed: 11/18/2022]
31
Means JA, Simson CM, Zhou S, Rachford AA, Rack JJ, Hines JV. Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base. Biochem Biophys Res Commun 2009;389:616-21. [PMID: 19755116 DOI: 10.1016/j.bbrc.2009.09.037] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2009] [Accepted: 09/10/2009] [Indexed: 11/28/2022]
32
Fauzi H, Agyeman A, Hines JV. T box transcription antitermination riboswitch: influence of nucleotide sequence and orientation on tRNA binding by the antiterminator element. BIOCHIMICA ET BIOPHYSICA ACTA 2009;1789:185-91. [PMID: 19152843 PMCID: PMC2656570 DOI: 10.1016/j.bbagrm.2008.12.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2008] [Revised: 12/09/2008] [Accepted: 12/09/2008] [Indexed: 11/18/2022]
33
Jack K, Means JA, Hines JV. Characterizing riboswitch function: identification of Mg2+ binding site in T box antiterminator RNA. Biochem Biophys Res Commun 2008;370:306-10. [PMID: 18371302 PMCID: PMC2526249 DOI: 10.1016/j.bbrc.2008.03.079] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2008] [Accepted: 03/19/2008] [Indexed: 11/19/2022]
34
Anupam R, Nayek A, Green NJ, Grundy FJ, Henkin TM, Means JA, Bergmeier SC, Hines JV. 4,5-Disubstituted oxazolidinones: High affinity molecular effectors of RNA function. Bioorg Med Chem Lett 2008;18:3541-4. [PMID: 18502126 DOI: 10.1016/j.bmcl.2008.05.015] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2008] [Revised: 04/24/2008] [Accepted: 05/02/2008] [Indexed: 10/22/2022]
35
Thomas JR, Hergenrother PJ. Targeting RNA with small molecules. Chem Rev 2008;108:1171-224. [PMID: 18361529 DOI: 10.1021/cr0681546] [Citation(s) in RCA: 506] [Impact Index Per Article: 31.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
36
Anupam R, Denapoli L, Muchenditsi A, Hines JV. Identification of neomycin B-binding site in T box antiterminator model RNA. Bioorg Med Chem 2008;16:4466-70. [PMID: 18329274 DOI: 10.1016/j.bmc.2008.02.056] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2007] [Revised: 02/12/2008] [Accepted: 02/19/2008] [Indexed: 11/30/2022]
37
Henkin TM, Grundy FJ. Sensing metabolic signals with nascent RNA transcripts: the T box and S box riboswitches as paradigms. COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 2007;71:231-7. [PMID: 17381302 DOI: 10.1101/sqb.2006.71.020] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
38
Means JA, Wolf S, Agyeman A, Burton JS, Simson CM, Hines JV. T box riboswitch antiterminator affinity modulated by tRNA structural elements. Chem Biol Drug Des 2007;69:139-45. [PMID: 17381728 DOI: 10.1111/j.1747-0285.2007.00476.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
39
Hobro AJ, Rouhi M, Blanch EW, Conn GL. Raman and Raman optical activity (ROA) analysis of RNA structural motifs in Domain I of the EMCV IRES. Nucleic Acids Res 2007;35:1169-77. [PMID: 17264119 PMCID: PMC1851652 DOI: 10.1093/nar/gkm012] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2006] [Revised: 12/20/2006] [Accepted: 12/27/2006] [Indexed: 11/13/2022]  Open
40
Means J, Katz S, Nayek A, Anupam R, Hines JV, Bergmeier SC. Structure–activity studies of oxazolidinone analogs as RNA-binding agents. Bioorg Med Chem Lett 2006;16:3600-4. [PMID: 16603349 DOI: 10.1016/j.bmcl.2006.03.068] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2006] [Revised: 03/20/2006] [Accepted: 03/21/2006] [Indexed: 11/26/2022]
41
Nelson AR, Henkin TM, Agris PF. tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA. RNA (NEW YORK, N.Y.) 2006;12:1254-61. [PMID: 16741230 PMCID: PMC1484421 DOI: 10.1261/rna.29906] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
42
Ryckelynck M, Giegé R, Frugier M. tRNAs and tRNA mimics as cornerstones of aminoacyl-tRNA synthetase regulations. Biochimie 2006;87:835-45. [PMID: 15925436 DOI: 10.1016/j.biochi.2005.02.014] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2004] [Revised: 12/31/2004] [Accepted: 02/04/2005] [Indexed: 10/25/2022]
43
Winkler WC, Breaker RR. Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 2006;59:487-517. [PMID: 16153177 DOI: 10.1146/annurev.micro.59.030804.121336] [Citation(s) in RCA: 534] [Impact Index Per Article: 29.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
44
Grajcar L, El Amri C, Ghomi M, Fermandjian S, Huteau V, Mandel R, Lecomte S, Baron MH. Assessment of adenyl residue reactivity within model nucleic acids by surface enhanced Raman spectroscopy. Biopolymers 2006;82:6-28. [PMID: 16425174 DOI: 10.1002/bip.20455] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
45
Fauzi H, Jack KD, Hines JV. In vitro selection to identify determinants in tRNA for Bacillus subtilis tyrS T box antiterminator mRNA binding. Nucleic Acids Res 2005;33:2595-602. [PMID: 15879350 PMCID: PMC1090546 DOI: 10.1093/nar/gki546] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Yousef MR, Grundy FJ, Henkin TM. Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA. J Mol Biol 2005;349:273-87. [PMID: 15890195 DOI: 10.1016/j.jmb.2005.03.061] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2005] [Revised: 03/18/2005] [Accepted: 03/22/2005] [Indexed: 10/25/2022]
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Means JA, Hines JV. Fluorescence resonance energy transfer studies of aminoglycoside binding to a T box antiterminator RNA. Bioorg Med Chem Lett 2005;15:2169-72. [PMID: 15808490 DOI: 10.1016/j.bmcl.2005.02.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2004] [Revised: 02/01/2005] [Accepted: 02/02/2005] [Indexed: 11/15/2022]
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Grundy FJ, Yousef MR, Henkin TM. Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. J Mol Biol 2004;346:73-81. [PMID: 15663928 DOI: 10.1016/j.jmb.2004.11.051] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2004] [Revised: 11/19/2004] [Accepted: 11/19/2004] [Indexed: 10/26/2022]
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Grundy FJ, Henkin TM. Regulation of gene expression by effectors that bind to RNA. Curr Opin Microbiol 2004;7:126-31. [PMID: 15063848 DOI: 10.1016/j.mib.2004.02.013] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Yousef MR, Grundy FJ, Henkin TM. tRNA requirements for glyQS antitermination: a new twist on tRNA. RNA (NEW YORK, N.Y.) 2003;9:1148-1156. [PMID: 12923262 PMCID: PMC1370478 DOI: 10.1261/rna.5540203] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2003] [Accepted: 05/30/2003] [Indexed: 05/24/2023]
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