Fractionation of denatured pneumococcal DNA: evidence for resolution of complementary strands

Transforming Activity in Both Complementary Strands of Bacillus subtilis DNA

Under conditions favoring single-strand transformation, the two complementary strands of Bacillus subtilis DNA, separated by differential complexing with polyriboguanylic acid, have identical transforming activity. Moreover separated single strands, upon renaturation with unmarked (recipient) DNA, form heteroduplex molecules with similar double-strand transformin activity. These findings bear upon the mechanism of DNA integration.

Chromatography of different forms of DNA on immobilized histone columns

Histones 1, 2A, 2B, 3, 4, and 5 from chicken erythrocytes have each been covalently immobilized on agarose beads and tested for their ability to bind DNA. Both calf thymus DNA and PM-2 viral DNA (form II, a nicked circle) bind to columns of immobilized histone at low ionic strength and can be eluted with 0.2--0.8 M NaC1, depending on the histone column. The strength of DNA binding by histone columns is in the order H5 greater than H1 greater than greater than H2B approximately H3 greater than H4 approximately H2A. About 70% of a heat-denatured calf thymus DNA sample and 100% of a supercoiled (form I) PM-2 DNA sample bind very tightly to histone columns and are released only by strong protein denaturants.

Chromatographically fractionated complementary strands of Bacillus subtilis deoxyribonucleic acid: biological properties

Biological, physical, and chromatographic properties of methylated albuminkieselguhr (MAK)-fractionated complementary strands, designated as light (L) and heavy (H), of Bacillus subtilis deoxyribonucleic acid (DNA) are presented. The pattern of transforming activity along the MAK elution profile of alkilidenatured DNA shows that the residually active molecules selectively fractionated ahead of the L strand fraction, whereas the most active self-annealed molecules fractionated preferentially at the trailing end of the H strand fraction. The restoration rate of transforming activity in the late-eluting H molecules was rapid and independent of concentration during the annealing reaction. The data suggest that the self-annealing activity in the H strand is due in part to the formation of intrastrand secondary structures. Hydroxyapatite chromatography of self-annealed L and H strands yielded a major fraction (I) of highly purified strand preparations devoid of transforming activity and hypochromicity, and a minor "nativelike" fraction (II). Sedimentation velocity measurements show that, in addition to the mutual complementary nature of the L and H fractions, they differ in molecular size and possibly configuration.

Chromatographically fractionated complementary strands of Bacillus subtilis deoxyribonucleic acid: transformation of hybrids

The annealing properties as measured by the restoration of transforming activity and hypochromicity of methylated albumin-kieselguhr (MAK)-fractionated complementary strands of Bacillus subtilis deoxyribonucleic acid (DNA) are presented. Temperature-absorbance measurements performed on annealed mixtures of various L and H strand fractions indicated the existence of a complementarity gradient between the two MAK peaks. The markers purA16, leu-8, metB(5), thr-5, and the linked marker hisB(2)-try-2 exhibited different bimodal distributions on MAK columns. The transforming efficiency of heteroduplex mixtures, prepared by cross-annealing resolved complementary strands of wild-type and recipient DNA, was compared. The transforming efficiency of the wild-type L and H strands was equal in one preparation and unequal in a second preparation. It was found that in the second strand preparation the heteroduplex DNA containing the H strand from wild type was more efficient for all of the markers tested. The variations in transforming efficiencies of the complementary strands in heteroduplex molecules reported here and by others are due in part to strands of unequal length and probably to the self-annealing property of the H strands. At present, no conclusion could be made regarding the existence of strand selection bias during integration of donor DNA in competent B. subtilis cells.

Complementary fractions of denatured DNA of coliphage T3 as templates for transcription

This paper discusses the evidence that two fractions obtained by the chromatography of denatured DNA of phage T3 on columns of methylated albumin-kieselguhr represent the complementary strands. This evidence derives from a variety of temperature-absorbance measurements and from the base composition of the RNA products synthesized by RNA polymerase under the direction of the two single-stranded DNA templates.