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For: Babic I, Andrew SE, Jirik FR. MutS interaction with mismatch and alkylated base containing DNA molecules detected by optical biosensor. Mutat Res 1996;372:87-96. [PMID: 9003535 DOI: 10.1016/s0027-5107(96)00170-4] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Number Cited by Other Article(s)
1
Ngo LT, Wang WK, Tseng YT, Chang TC, Kuo PL, Chau LK, Huang TT. MutS protein-based fiber optic particle plasmon resonance biosensor for detecting single nucleotide polymorphisms. Anal Bioanal Chem 2021;413:3329-3337. [PMID: 33712917 DOI: 10.1007/s00216-021-03271-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 02/08/2021] [Accepted: 03/04/2021] [Indexed: 01/29/2023]
2
Aparicio T, de Lorenzo V, Martínez-García E. A Broad Host Range Plasmid-Based Roadmap for ssDNA-Based Recombineering in Gram-Negative Bacteria. Methods Mol Biol 2020;2075:383-398. [PMID: 31584177 DOI: 10.1007/978-1-4939-9877-7_27] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
3
Aparicio T, Nyerges A, Nagy I, Pal C, Martínez‐García E, Lorenzo V. Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene. Environ Microbiol 2019;22:45-58. [DOI: 10.1111/1462-2920.14814] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Revised: 09/29/2019] [Accepted: 09/30/2019] [Indexed: 11/25/2022]
4
Aparicio T, de Lorenzo V, Martínez‐García E. CRISPR/Cas9-enhanced ssDNA recombineering for Pseudomonas putida. Microb Biotechnol 2019;12:1076-1089. [PMID: 31237429 PMCID: PMC6681395 DOI: 10.1111/1751-7915.13453] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 05/27/2019] [Accepted: 05/28/2019] [Indexed: 01/08/2023]  Open
5
Aparicio T, de Lorenzo V, Martínez-García E. CRISPR/Cas9-Based Counterselection Boosts Recombineering Efficiency in Pseudomonas putida. Biotechnol J 2017;13:e1700161. [PMID: 29058367 DOI: 10.1002/biot.201700161] [Citation(s) in RCA: 83] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 10/15/2017] [Indexed: 12/13/2022]
6
Ricaurte DE, Martínez-García E, Nyerges Á, Pál C, de Lorenzo V, Aparicio T. A standardized workflow for surveying recombinases expands bacterial genome-editing capabilities. Microb Biotechnol 2017;11:176-188. [PMID: 29094478 PMCID: PMC5743808 DOI: 10.1111/1751-7915.12846] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Revised: 07/27/2017] [Accepted: 08/03/2017] [Indexed: 11/29/2022]  Open
7
Kim I, Moon JS, Oh JW. Recent advances in M13 bacteriophage-based optical sensing applications. NANO CONVERGENCE 2016;3:27. [PMID: 28191437 PMCID: PMC5271159 DOI: 10.1186/s40580-016-0087-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Accepted: 10/07/2016] [Indexed: 05/03/2023]
8
Aparicio T, Jensen SI, Nielsen AT, de Lorenzo V, Martínez-García E. The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42. Biotechnol J 2016;11:1309-1319. [PMID: 27367544 DOI: 10.1002/biot.201600317] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Revised: 06/16/2016] [Accepted: 06/20/2016] [Indexed: 11/10/2022]
9
Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA. Nat Protoc 2014;9:2301-16. [DOI: 10.1038/nprot.2014.082] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
10
Ermini ML, Mariani S, Scarano S, Minunni M. Bioanalytical approaches for the detection of single nucleotide polymorphisms by Surface Plasmon Resonance biosensors. Biosens Bioelectron 2014;61:28-37. [PMID: 24841091 DOI: 10.1016/j.bios.2014.04.052] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2014] [Accepted: 04/23/2014] [Indexed: 11/16/2022]
11
Ermini ML, Mariani S, Scarano S, Campa D, Barale R, Minunni M. Single nucleotide polymorphism detection by optical DNA-based sensing coupled with whole genomic amplification. Anal Bioanal Chem 2012;405:985-93. [PMID: 22955671 DOI: 10.1007/s00216-012-6345-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2012] [Revised: 08/01/2012] [Accepted: 08/08/2012] [Indexed: 12/11/2022]
12
Wang HH, Xu G, Vonner AJ, Church G. Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion. Nucleic Acids Res 2011;39:7336-47. [PMID: 21609953 PMCID: PMC3167615 DOI: 10.1093/nar/gkr183] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
13
Application of mass fabricated silicon-based gold transducers for amperometric biosensors. Bioelectrochemistry 2010;80:31-7. [DOI: 10.1016/j.bioelechem.2010.03.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2010] [Revised: 03/11/2010] [Accepted: 03/14/2010] [Indexed: 11/21/2022]
14
Gong H, Zhong T, Gao L, Li X, Bi L, Kraatz HB. Unlabeled hairpin DNA probe for electrochemical detection of single-nucleotide mismatches based on MutS-DNA interactions. Anal Chem 2010;81:8639-43. [PMID: 19769379 DOI: 10.1021/ac901371n] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Kim S, Kim TG, Byon HR, Shin HJ, Ban C, Choi HC. Recognition of single mismatched DNA using MutS-immobilized carbon nanotube field effect transistor devices. J Phys Chem B 2009;113:12164-8. [PMID: 19685907 DOI: 10.1021/jp9063559] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Noe CR, Kaufhold L. Chemistry of Antisense Oligonucleotides. ACTA ACUST UNITED AC 2008. [DOI: 10.1002/9783527613403.ch9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
17
Taira K, Nakamura S, Nakano K, Maehara D, Okamoto K, Arimoto S, Loakes D, Worth L, Schaaper RM, Seio K, Sekine M, Negishi K, Negishi T. Binding of MutS protein to oligonucleotides containing a methylated or an ethylated guanine residue, and correlation with mutation frequency. Mutat Res 2007;640:107-12. [PMID: 18243250 PMCID: PMC2365708 DOI: 10.1016/j.mrfmmm.2007.12.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2007] [Revised: 10/24/2007] [Accepted: 12/18/2007] [Indexed: 12/30/2022]
18
Cho M, Lee S, Han SY, Park JY, Rahman MA, Shim YB, Ban C. Electrochemical detection of mismatched DNA using a MutS probe. Nucleic Acids Res 2006;34:e75. [PMID: 16772400 PMCID: PMC1483224 DOI: 10.1093/nar/gkl364] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
19
Joseph N, Duppatla V, Rao DN. Prokaryotic DNA Mismatch Repair. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 2006;81:1-49. [PMID: 16891168 DOI: 10.1016/s0079-6603(06)81001-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
20
Han A, Takarada T, Shibata T, Nakayama M, Maeda M. A MutS Protein-immobilized Au Electrode for Detecting Single-base Mismatch of DNA. ANAL SCI 2006;22:663-6. [PMID: 16770041 DOI: 10.2116/analsci.22.663] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
21
Su X, Robelek R, Wu Y, Wang G, Knoll W. Detection of Point Mutation and Insertion Mutations in DNA Using a Quartz Crystal Microbalance and MutS, a Mismatch Binding Protein. Anal Chem 2003;76:489-94. [PMID: 14719903 DOI: 10.1021/ac035175g] [Citation(s) in RCA: 113] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
22
Hang B, Singer B. Protein−Protein Interactions Involving DNA Glycosylases. Chem Res Toxicol 2003;16:1181-95. [PMID: 14565759 DOI: 10.1021/tx030020p] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
23
Fourrier L, Brooks P, Malinge JM. Binding discrimination of MutS to a set of lesions and compound lesions (base damage and mismatch) reveals its potential role as a cisplatin-damaged DNA sensing protein. J Biol Chem 2003;278:21267-75. [PMID: 12654906 DOI: 10.1074/jbc.m301390200] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
24
Biswas T, Clos LJ, SantaLucia J, Mitra S, Roy R. Binding of specific DNA base-pair mismatches by N-methylpurine-DNA glycosylase and its implication in initial damage recognition. J Mol Biol 2002;320:503-13. [PMID: 12096906 DOI: 10.1016/s0022-2836(02)00519-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
25
Brockman JM, Nelson BP, Corn RM. Surface plasmon resonance imaging measurements of ultrathin organic films. Annu Rev Phys Chem 2001;51:41-63. [PMID: 11031275 DOI: 10.1146/annurev.physchem.51.1.41] [Citation(s) in RCA: 438] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
26
Nelson BP, Grimsrud TE, Liles MR, Goodman RM, Corn RM. Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem 2001;73:1-7. [PMID: 11195491 DOI: 10.1021/ac0010431] [Citation(s) in RCA: 546] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Nakahara T, Zhang QM, Hashiguchi K, Yonei S. Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. Nucleic Acids Res 2000;28:2551-6. [PMID: 10871405 PMCID: PMC102710 DOI: 10.1093/nar/28.13.2551] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
28
Skopek TR, Glaab WE, Monroe JJ, Kort KL, Schaefer W. Analysis of sequence alterations in a defined DNA region: comparison of temperature-modulated heteroduplex analysis and denaturing gradient gel electrophoresis. Mutat Res 1999;430:13-21. [PMID: 10592314 DOI: 10.1016/s0027-5107(99)00150-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
29
Johnson KA, Mierzwa ML, Fink SP, Marnett LJ. MutS recognition of exocyclic DNA adducts that are endogenous products of lipid oxidation. J Biol Chem 1999;274:27112-8. [PMID: 10480926 DOI: 10.1074/jbc.274.38.27112] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
30
Terato H, Masaoka A, Kobayashi M, Fukushima S, Ohyama Y, Yoshida M, Ide H. Enzymatic repair of 5-formyluracil. II. Mismatch formation between 5-formyluracil and guanine during dna replication and its recognition by two proteins involved in base excision repair (AlkA) and mismatch repair (MutS). J Biol Chem 1999;274:25144-50. [PMID: 10455196 DOI: 10.1074/jbc.274.35.25144] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
31
Brockman JM, Frutos AG, Corn RM. A Multistep Chemical Modification Procedure To Create DNA Arrays on Gold Surfaces for the Study of Protein−DNA Interactions with Surface Plasmon Resonance Imaging. J Am Chem Soc 1999. [DOI: 10.1021/ja991608e] [Citation(s) in RCA: 286] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
32
Taylor GR, Deeble J. Enzymatic methods for mutation scanning. GENETIC ANALYSIS : BIOMOLECULAR ENGINEERING 1999;14:181-6. [PMID: 10084112 DOI: 10.1016/s1050-3862(98)00029-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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