Synthesis of biliverdin IXγ (pterobilin)

Ultrasensitive reversible chromophore reaction of BODIPY functions as high ratio double turn on probe

Chromophore reactions with changes to conjugation degree, especially those between the conjugated and unconjugated state, will bring a large spectral variation. To realize such a process, a meso-naked BODIPY (MNBOD) with two electron-withdrawing groups around the core is designed and synthesized. The resulting system is extremely sensitive to bases. The red, highly fluorescent solution readily becomes colorless and non-fluorescent after base addition; however, the color and fluorescence can be totally and instantly restored by addition of acid or formaldehyde. Analyses show that two identical MNBODs are connected by a C–C single bond (sp³) at the meso-position through a radical reaction that results in an unconjugated, colorless dimer complexed with bases. When the bases are consumed, the dimer immediately dissociates into the red, highly fluorescent, conjugated MNBOD monomer. With 260 nm spectral change and over 120,000 turn-on ratio, this chromophore-reaction can be utilized as a sensitive reaction-based dual-signal probe.

BODIPY dyes, though widely explored, have not been pursued as chromophore reaction based chemical probes. Here, the authors synthesize a meso-naked BODIPY core flanked with two electron-withdrawing groups, which undergoes a reversible change in conjugated structure in the presence of base and functions as a dual signal and ultrahigh turn-on ratio chemical probe.

What’s in a name? The MacDonald condensation

In 1960, MacDonald and coworkers introduced a new method for porphyrin synthesis that involved the acid-catalyzed condensation of dipyrrylmethane dialdehydes with [Formula: see text],[Formula: see text]-diunsubstituted dipyrrylmethanes or the related dicarboxylic acids, followed by an air oxidation. The key bond forming steps entail electrophilic substitution at two pyrrole units with the aldehyde moieties to generate, following elimination of water, a 5,15-dihydroporphyrin or porphodimethene intermediate. Following addition of sodium acetate, or in later procedures zinc acetate, the dihydroporphyrins readily air oxidize to the fully aromatic porphyrin system. This strategy, which parallels chemistry contemporaneously developed by R. B. Woodward at Harvard for the total synthesis of chlorophyll [Formula: see text], demonstrated that dipyrrylmethanes were sufficiently stable to be utilized as intermediates in porphyrin syntheses and that porphodimethene formation circumvented acidolytic scrambling reactions that might lead to isomeric porphyrin products. This type of chemistry was later adapted by Johnson, Woodward and others to prepare porphyrin-type systems by a “3 + 1” strategy, or expanded porphyrins by “3 + 2” or other combinations of oligopyrrolic precursors. In recent years, the term “MacDonald condensation” has been increasingly used to describe other types of chemistry involving oligopyrrolic intermediates. Following on from a historical review of this area, guidelines for the identification of MacDonald-type reactions are proposed.

(m.n)-Homorubins. Syntheses and Structures

Five new homorubin analogs of bilirubin with their two dipyrrinone components conjoined to (CH₂)₂, (CH₂)₃, and (CH₂)₄ units were synthesized with propionic acid chains shortened to acetic and elongated to butyric, and examined by spectroscopy and molecular mechanics computations for an ability to form conformation-determining hydrogen bonds. With m designating the number of conjoining CH₂ units and n indicating the number of CH₂ units of the alkanoic acid chains of (m.n)-homorubins, (2.1), (3.2), (4.2), and (4.3) homorubins were prepared and compared with previously synthesized (2.2) and (2.3), which adopt intramolecularly hydrogen bonded conformations in CHCl₃.