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Žurauskas J, Boháčová S, Wu S, Butera V, Schmid S, Domański M, Slanina T, Barham JP. Electron-Poor Acridones and Acridiniums as Super Photooxidants in Molecular Photoelectrochemistry by Unusual Mechanisms. Angew Chem Int Ed Engl 2023; 62:e202307550. [PMID: 37584300 DOI: 10.1002/anie.202307550] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 08/14/2023] [Accepted: 08/15/2023] [Indexed: 08/17/2023]
Abstract
Electron-deficient acridones and in situ generated acridinium salts are reported as potent, closed-shell photooxidants that undergo surprising mechanisms. When bridging acyclic triarylamine catalysts with a carbonyl group (acridones), this completely diverts their behavior away from open-shell, radical cationic, 'beyond diffusion' photocatalysis to closed-shell, neutral, diffusion-controlled photocatalysis. Brønsted acid activation of acridones dramatically increases excited state oxidation power (by +0.8 V). Upon reduction of protonated acridones, they transform to electron-deficient acridinium salts as even more potent photooxidants (*E1/2 =+2.56-3.05 V vs SCE). These oxidize even electron-deficient arenes where conventional acridinium salt photooxidants have thusfar been limited to electron-rich arenes. Surprisingly, upon photoexcitation these electron-deficient acridinium salts appear to undergo two electron reductive quenching to form acridinide anions, spectroscopically-detected as their protonated forms. This new behaviour is partly enabled by a catalyst preassembly with the arene, and contrasts to conventional SET reductive quenching of acridinium salts. Critically, this study illustrates how redox active chromophoric molecules initially considered photocatalysts can transform during the reaction to catalytically active species with completely different redox and spectroscopic properties.
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Affiliation(s)
- Jonas Žurauskas
- Institute of Organic Chemistry, University of Regensburg, Universitätsstr. 31, 93053, Regensburg, Germany
| | - Soňa Boháčová
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 16000, Prague 6, Czech Republic
| | - Shangze Wu
- Institute of Organic Chemistry, University of Regensburg, Universitätsstr. 31, 93053, Regensburg, Germany
| | - Valeria Butera
- Central European Institute of Technology, CEITEC, 61200 Brno (Czech Republic), Department of Science and Biological Chemical and Pharmaceutical Technologies, University of Palermo, 90128, Palermo, Italy
| | - Simon Schmid
- Institute of Organic Chemistry, University of Regensburg, Universitätsstr. 31, 93053, Regensburg, Germany
| | - Michał Domański
- Institute of Organic Chemistry, University of Regensburg, Universitätsstr. 31, 93053, Regensburg, Germany
| | - Tomáš Slanina
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 16000, Prague 6, Czech Republic
| | - Joshua P Barham
- Institute of Organic Chemistry, University of Regensburg, Universitätsstr. 31, 93053, Regensburg, Germany
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Paciotti R, Fish RH, Marrone A. MD-DFT Computational Studies on the Mechanistic and Conformational Parameters for the Chemoselective Tyrosine Residue Reactions of G-Protein-Coupled Receptor Peptides with [Cp*Rh(H 2O) 3](OTf) 2 in Water To Form Their [(η 6-Cp*Rh-Tyr #)-GPCR peptide] 2+ Complexes: Noncovalent H-Bonding Interactions, Molecular Orbital Analysis, Thermodynamics, and Lowest Energy Conformations. Organometallics 2022. [DOI: 10.1021/acs.organomet.2c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Roberto Paciotti
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Chieti 5130, Italy
| | - Richard H. Fish
- Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, United States
| | - Alessandro Marrone
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Chieti 5130, Italy
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Kim Y, Jeong Y, Kim J, Lee EK, Kim WJ, Choi IS. MolNet: A Chemically Intuitive Graph Neural Network for Prediction of Molecular Properties. Chem Asian J 2022; 17:e202200269. [PMID: 35678087 DOI: 10.1002/asia.202200269] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 06/04/2022] [Indexed: 11/08/2022]
Abstract
Most graph neural networks (GNNs) in deep-learning chemistry collect and update atom and molecule features from the fed atom (and, in some cases, bond) features, basically based on the two-dimensional (2D) graph representation of 3D molecules. However, the 2D-based models do not faithfully represent 3D molecules and their physicochemical properties, exemplified by the overlooked field effect that is a "through-space" effect, not a "through-bond" effect. We propose a GNN model, denoted as MolNet, which accommodates the 3D non-bond information in a molecule, via a noncovalent adjacency matrix A ‾ , and also bond-strength information from a weighted bond matrix B . Comparative studies show that MolNet outperforms various baseline GNN models and gives a state-of-the-art performance in the classification task of BACE dataset and regression task of ESOL dataset. This work suggests a future direction for the construction of deep-learning models that are chemically intuitive and compatible with the existing chemistry concepts and tools.
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Affiliation(s)
- Yeji Kim
- Department of Chemistry, KAIST, Daejeon, 34141, Korea
| | - Yoonho Jeong
- Department of Chemistry, KAIST, Daejeon, 34141, Korea
| | - Jihoo Kim
- Department of Chemistry, KAIST, Daejeon, 34141, Korea
| | - Eok Kyun Lee
- Department of Chemistry, KAIST, Daejeon, 34141, Korea
| | - Won June Kim
- Department of Biology and Chemistry, Changwon National University, Changwon, 51140, Korea
| | - Insung S Choi
- Department of Chemistry, KAIST, Daejeon, 34141, Korea
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Burns RJ, Mati IK, Muchowska KB, Adam C, Cockroft SL. Quantifying Through-Space Substituent Effects. Angew Chem Int Ed Engl 2020; 59:16717-16724. [PMID: 32542910 PMCID: PMC7540488 DOI: 10.1002/anie.202006943] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Indexed: 01/12/2023]
Abstract
The description of substituents as electron donating or withdrawing leads to a perceived dominance of through-bond influences. The situation is compounded by the challenge of separating through-bond and through-space contributions. Here, we probe the experimental significance of through-space substituent effects in molecular interactions and reaction kinetics. Conformational equilibrium constants were transposed onto the Hammett substituent constant scale revealing dominant through-space substituent effects that cannot be described in classic terms. For example, NO2 groups positioned over a biaryl bond exhibited similar influences as resonant electron donors. Meanwhile, the electro-enhancing influence of OMe/OH groups could be switched off or inverted by conformational twisting. 267 conformational equilibrium constants measured across eleven solvents were found to be better predictors of reaction kinetics than calculated electrostatic potentials, suggesting utility in other contexts and for benchmarking theoretical solvation models.
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Affiliation(s)
- Rebecca J. Burns
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black BuildingDavid Brewster RoadEdinburghEH9 3FJUK
| | - Ioulia K. Mati
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black BuildingDavid Brewster RoadEdinburghEH9 3FJUK
| | - Kamila B. Muchowska
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black BuildingDavid Brewster RoadEdinburghEH9 3FJUK
| | - Catherine Adam
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black BuildingDavid Brewster RoadEdinburghEH9 3FJUK
| | - Scott L. Cockroft
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black BuildingDavid Brewster RoadEdinburghEH9 3FJUK
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5
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Burns RJ, Mati IK, Muchowska KB, Adam C, Cockroft SL. Quantifying Through‐Space Substituent Effects. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202006943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Rebecca J. Burns
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black Building David Brewster Road Edinburgh EH9 3FJ UK
| | - Ioulia K. Mati
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black Building David Brewster Road Edinburgh EH9 3FJ UK
| | - Kamila B. Muchowska
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black Building David Brewster Road Edinburgh EH9 3FJ UK
| | - Catherine Adam
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black Building David Brewster Road Edinburgh EH9 3FJ UK
| | - Scott L. Cockroft
- EaStCHEM School of ChemistryUniversity of EdinburghJoseph Black Building David Brewster Road Edinburgh EH9 3FJ UK
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Quast H, Fuchsbauer HL. Intramolekulare Wechselwirkungen in Radikalkationen von Di- und Tetra(α-methoxy)-9,10-dihydro-9,10-ethanoanthracenen. ACTA ACUST UNITED AC 1986. [DOI: 10.1002/cber.19861190803] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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8
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Grob CA, Kaiser A, Schweizer T. The Transmission of Polar Effects Polar Effects. Part II. Helv Chim Acta 1977. [DOI: 10.1002/hlca.19770600210] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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9
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Darstellung und Protenenresonanz-Spektren von 1- und 2-substituierten 9,10-Dihydro-9,10-�thanoanthracenen. MONATSHEFTE FUR CHEMIE 1973. [DOI: 10.1007/bf00911168] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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