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Tsukano C, Uchino A, Irie K. Synthesis and applications of symmetric amino acid derivatives. Org Biomol Chem 2024; 22:411-428. [PMID: 37877370 DOI: 10.1039/d3ob01379k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
Abstract
Symmetric α-amino acid derivatives can be used for the synthesis of intermolecularly linked peptides such as dimer-type peptides, and modified peptides in which two amino acids are intramolecularly linked. They are also synthetic intermediates for the total synthesis of natural products and functional molecules. These symmetric amino acid derivatives must be prepared based on organic synthesis. It is necessary to develop an optimal synthetic strategy for constructing the target symmetric amino acid derivative. In this review, we will introduce strategies for synthesizing symmetric amino acid derivatives. Additionally, selected applications of these amino acids in the life sciences will be described.
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Affiliation(s)
- Chihiro Tsukano
- Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.
| | - Ayumi Uchino
- Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.
| | - Kazuhiro Irie
- Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.
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Undheim K. The Schöllkopf chiron and transition metal mediated reactions, a powerful combination for stereoselective construction of cyclic α-quaternary-α-amino acid derivatives. Amino Acids 2007; 34:357-402. [PMID: 17476570 DOI: 10.1007/s00726-007-0512-5] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2007] [Accepted: 02/21/2007] [Indexed: 11/30/2022]
Abstract
The focus has been on the development of methodology for stereoselective preparation of spiroannulated intermediates of the Schöllkopf chiron and further transformations to cyclic alpha-amino acids. The spiroannulations are effected by Ru(II)-catalysed ring-closing metathesis reactions, by Ru(II)- and Pd(0)-catalysed cycloisomerisations, by Rh(II)-carbenoid cyclisation reactions and by intramolecular aldol condensations. Hydrolytic reactions of the spirane intermediates have provided several groups of highly novel and functionalised five-, six- and seven-membered cyclic alpha-quaternary-alpha-amino acid derivatives as well as alicyclic derivatives. The novel cyclic amino acid derivatives can be regarded as cyclic constrained analogues of corresponding common amino acids, or in some cases as intermediates for further preparation of such amino acids. Some emphasis has been on the preparation of cyclic serine analogues. Major efforts have been on the preparation of cyclic alpha-quaternary bis(alpha-amino acid) derivatives as conformationally constrained dicarba-analogues of cystine.
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Affiliation(s)
- K Undheim
- Department of Chemistry, University of Oslo, Oslo, Norway.
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Andrei M, Efskind J, Undheim K. A stereoselective synthesis of a spiro-bridged bis(α-amino acid) derivative based on Ru(II)-catalysed RCM reactions. Tetrahedron 2007. [DOI: 10.1016/j.tet.2007.03.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Kotha S, Shah VR, Halder S, Vinodkumar R, Lahiri K. Synthesis of bis-armed amino acid derivatives via the alkylation of ethyl isocyanoacetate and the Suzuki–Miyaura cross-coupling reaction. Amino Acids 2006; 32:387-94. [PMID: 17031480 DOI: 10.1007/s00726-006-0402-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2006] [Accepted: 07/17/2006] [Indexed: 10/24/2022]
Abstract
Two synthetic routes to bis-armed-alpha-amino acid derivatives are described. The first route involves alkylation of dibromo derivatives with ethyl isocyanoacetate under phase-transfer catalysis (PTC) conditions. The second route uses a palladium-mediated Suzuki-Miyaura cross-coupling reaction between a DL-4-boronophenylalanine derivative and aromatic diiodo (or dibromo) compounds.
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Affiliation(s)
- S Kotha
- Department of Chemistry, Indian Institute of Technology-Bombay, Powai, Mumbai, India.
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Soloshonok VA, Yamada T, Ueki H, Moore AM, Cook TK, Arbogast KL, Soloshonok AV, Martin CH, Ohfune Y. Operationally convenient, efficient asymmetric synthesis of enantiomerically pure 4-aminoglutamic acids via methylene dimerization of chiral glycine equivalents with dichloromethane. Tetrahedron 2006. [DOI: 10.1016/j.tet.2006.04.023] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Chen J, Corbin SP, Holman NJ. An Improved Large Scale Synthesis of the Schöllkopf Chiral Auxiliaries: (2R)- and (2S)-2,5-Dihydro-3,6-dimethoxy-2-isopropylpyrazine. Org Process Res Dev 2005. [DOI: 10.1021/op049777t] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jianxie Chen
- Albany Molecular Research, Inc., Syracuse Research Center, 7001 Performance Drive, North Syracuse, New York 13212, U.S.A
| | - Scott P. Corbin
- Albany Molecular Research, Inc., Syracuse Research Center, 7001 Performance Drive, North Syracuse, New York 13212, U.S.A
| | - Nicholas J. Holman
- Albany Molecular Research, Inc., Syracuse Research Center, 7001 Performance Drive, North Syracuse, New York 13212, U.S.A
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van Swieten PF, Maehr R, van den Nieuwendijk AMCH, Kessler BM, Reich M, Wong CS, Kalbacher H, Leeuwenburgh MA, Driessen C, van der Marel GA, Ploegh HL, Overkleeft HS. Development of an isotope-coded activity-based probe for the quantitative profiling of cysteine proteases. Bioorg Med Chem Lett 2005; 14:3131-4. [PMID: 15149659 DOI: 10.1016/j.bmcl.2004.04.046] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2004] [Revised: 04/08/2004] [Accepted: 04/08/2004] [Indexed: 10/26/2022]
Abstract
Quantification studies of complex protein mixtures have been restricted mainly to whole cell extracts. Here we describe the synthesis of two sets of isotope-coded activity-based probes that allow quantitative functional proteomics experiments on the cathepsins.
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Affiliation(s)
- Paul F van Swieten
- Gorlaeus Laboratories, Leiden University, Einsteinweg 55, 2300 RA Leiden, The Netherlands
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Chemoselective rhodium(II)–carbenoid cyclisation reactions in the stereoselective construction of rigidified cyclic α-amino acid derivatives. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.tetasy.2004.03.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Andrei M, Römming C, Undheim K. Rh(II)-catalysed carbenoid cyclisations in a stereoselective approach to α-quaternary pipecolic acid derivatives. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.tetasy.2004.03.018] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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10
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Møller BS, Undheim K. A Versatile Method for the Preparation of Enantiomeric Benzene-1,2-bis(alanine) Derivatives. SYNTHETIC COMMUN 2003. [DOI: 10.1081/scc-120026849] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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A new stereocontrolled synthesis of uncommon tripeptides derived from 2,6-diaminopimelic acid (2,6-DAP). ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s0957-4166(02)00002-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Paradisi F, Porzi G, Rinaldi S, Sandri S. Stereoselective synthesis of α,α′-diamino-dicarboxylic acids. Part 2. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(00)00450-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Schumann S, Zeitler K, Jäger M, Polborn K, Steglich W. Stereocontrolled Backbone Connection of Peptides by C C-Double Bonds. Tetrahedron 2000. [DOI: 10.1016/s0040-4020(00)00343-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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16
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Cox RJ, Sutherland A, Vederas JC. Bacterial diaminopimelate metabolism as a target for antibiotic design. Bioorg Med Chem 2000; 8:843-71. [PMID: 10881998 DOI: 10.1016/s0968-0896(00)00044-4] [Citation(s) in RCA: 94] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Affiliation(s)
- R J Cox
- School of Chemistry, University of Bristol, Clifton, UK.
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