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Serdaroğlu G, Uludag N, Üstün E. An efficient new method of ytterbium(III) triflate catalysis approach to the synthesis of substituted pyrroles: DFT, ADMET, and molecular docking investigations. Comput Biol Chem 2023; 106:107930. [PMID: 37542846 DOI: 10.1016/j.compbiolchem.2023.107930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 07/14/2023] [Accepted: 07/15/2023] [Indexed: 08/07/2023]
Abstract
In this study, the one-pot synthetic methodology for the preparation of substituted pyrroles with diethyl acetylene-dicarboxylate is reported for the various pyrrole derivatives via the Trifimow synthesis process from oximes. This method also offers the literature as a cyclization pathway using a ytterbium triflate catalyst. Another importance of this study is the use of pyrrole derivatives in pharmaceuticals, biological processes, and agrochemicals. From this point of view, the development of a new catalyst in synthetic organic chemistry and the difference in the method is also important. The syntheses of the target substituted pyrroles are accomplished in high yields. Also, all synthesized structures were confirmed by 1H NMR, 13C NMR, and IR spectra. The DFT computations were leveraged for structural and spectroscopic validation of the compounds. Then, FMO and NBO analyses were subsequently employed to elucidate the reactivity characteristics and intramolecular interactions within these compounds. Also, ADMET indices were ascertained to assess potential pharmacokinetic properties, drug-like qualities, and possible adverse effects of these compounds. Last, optimized molecules were analyzed by molecular docking methods against crystal structures of Bovine Serum Albumin and Leukemia Inhibitory Factor, and their binding affinities, interaction details, and inhibition constants were determined.
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Affiliation(s)
- Goncagül Serdaroğlu
- Sivas Cumhuriyet University, Faculty of Education, Math. and Sci. Edu., 58140, Sivas, Turkey.
| | - Nesimi Uludag
- Department of Chemistry, Faculty of Arts and Sciences, Namık Kemal University, 59030, Tekirdağ, Turkey
| | - Elvan Üstün
- Department of Chemistry, Faculty of Art and Science, Ordu University, 52200 Ordu, Turkey
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2
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Venkatesan N, Rajakumar P. Application of McMurry Coupling for the Synthesis of Indolophanetriene and Carbazolophanetriene - A New Class of Caged Cyclophanes. ChemistrySelect 2019. [DOI: 10.1002/slct.201802522] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Nagarathinam Venkatesan
- Department of Organic Chemistry; University of Madras; Guindy Campus; Chennai 600 025
- Department of Chemistry; Adhi College of Engineering and Technology, Sankarapuram; Kanchipuram 631 605
| | - Perumal Rajakumar
- Department of Organic Chemistry; University of Madras; Guindy Campus; Chennai 600 025
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Rajakumar P, Venkatesan N, Mohanraj G. Synthesis, antibacterial and antioxidant properties of novel ethylenoindolophanes – a new class of cyclophanes. RSC Adv 2014. [DOI: 10.1039/c4ra00303a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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4
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Zhang L, Xie X, Fu L, Zhang Z. [RuCl2(p-cymene)]2-Catalyzed Conjugate Addition of Arylboronic Acids to α,β-Unsaturated Ketones under Ligand-Free and Neutral Conditions. J Org Chem 2013; 78:3434-7. [DOI: 10.1021/jo4001367] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lei Zhang
- School
of Pharmacy and ‡School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road,
Shanghai 200240, China
| | - Xiaomin Xie
- School
of Pharmacy and ‡School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road,
Shanghai 200240, China
| | - Lei Fu
- School
of Pharmacy and ‡School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road,
Shanghai 200240, China
| | - Zhaoguo Zhang
- School
of Pharmacy and ‡School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road,
Shanghai 200240, China
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Muthusamy S, Karikalan T, Gunanathan C, Suresh E. Rhodium(II) catalyzed intermolecular double C-alkylation: a method for the synthesis of tetraindoles and indolophanes. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.11.073] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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7
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Xu H, Sun HS, Luo FM, Ding JQ. 1-Butyl-3-(1-naphtho-yl)-1H-indole. Acta Crystallogr Sect E Struct Rep Online 2011; 67:o1349. [PMID: 21754743 PMCID: PMC3120386 DOI: 10.1107/s1600536811016631] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2011] [Accepted: 05/03/2011] [Indexed: 11/24/2022]
Abstract
In the title molecule, C23H21NO, the dihedral angle between the planes of the indole ring and naphthalene ring system is 68.8 (5)°.
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Li XQ, Wang WK, Zhang C. One-Pot Synthesis of Carbamoyl Azides Directly from Primary Alcohols and Oxidation of Secondary Alcohols to Ketones Using Iodobenzene Dichloride in Combination with Sodium Azide. Adv Synth Catal 2009. [DOI: 10.1002/adsc.200900428] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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9
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Wang W, Bain AD, Wang LQ, Exarhos GJ, Li ADQ. Molecular Self-Assembly Inhibition Leads to Basket-Shaped Cyclophane Formation with Chiral Dynamics. J Phys Chem A 2008; 112:3094-103. [DOI: 10.1021/jp077650a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Wei Wang
- Department of Chemistry, Washington State University, Pullman, Washington 99164, Department of Chemistry, McMaster University, Hamilton, ON, Canada L8S 4M1, and Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354
| | - Alex D. Bain
- Department of Chemistry, Washington State University, Pullman, Washington 99164, Department of Chemistry, McMaster University, Hamilton, ON, Canada L8S 4M1, and Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354
| | - Li-Qiong Wang
- Department of Chemistry, Washington State University, Pullman, Washington 99164, Department of Chemistry, McMaster University, Hamilton, ON, Canada L8S 4M1, and Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354
| | - Gregory J. Exarhos
- Department of Chemistry, Washington State University, Pullman, Washington 99164, Department of Chemistry, McMaster University, Hamilton, ON, Canada L8S 4M1, and Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354
| | - Alexander D. Q. Li
- Department of Chemistry, Washington State University, Pullman, Washington 99164, Department of Chemistry, McMaster University, Hamilton, ON, Canada L8S 4M1, and Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354
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Rajakumar P, Gayatri Swaroop M, Jayavelu S, Murugesan K. Synthesis, complexation studies and biological applications of some novel stilbenophanes, indolophanes and bisindolostilbenophanes via McMurry coupling. Tetrahedron 2006. [DOI: 10.1016/j.tet.2006.09.078] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Affiliation(s)
- Gordon W. Gribble
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, U.S.A
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Rajakumar P, Gayatri Swaroop M. Synthesis of novel indole based cyclophanes and cylindrical cyclophanes by tandem alkylation methodology using NaH. Tetrahedron Lett 2006. [DOI: 10.1016/j.tetlet.2006.03.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Nakamura T, Kakinuma H, Amada H, Miyata N, Taniguchi K, Koda A, Sato M. Pyrazole derivatives as new potent and selective 20-hydroxy-5,8,11,14-eicosatetraenoic acid synthase inhibitors. Bioorg Med Chem 2004; 12:6209-19. [PMID: 15519164 DOI: 10.1016/j.bmc.2004.08.047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2004] [Revised: 08/31/2004] [Accepted: 08/31/2004] [Indexed: 11/18/2022]
Abstract
Improvement of the physical properties of pyrazole derivative 1, which we reported previously as a potent and selective 20-HETE synthase inhibitor (IC(50) 5.7 nM), is described. Introduction of a sufficient substituted-amino group on the side chain enhanced the water-solubility of 1 (0.014 mg/mL at pH 6.8). Among the products, 2-piperazinoethoxy derivatives 3e and 6b showed solubility suitable for injection and potent inhibitory activity toward 20-HETE synthase (IC(50) 21.2 and 14.0 nM, respectively).
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Affiliation(s)
- Toshio Nakamura
- Medicinal Research Laboratories, Taisho Pharmaceutical Co. Ltd, 403 Yoshino-Cho 1-Chome, Kita-ku, Saitama-Shi, Saitama 331-9530, Japan.
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Rajakumar P, Gayatri Swaroop M. The use of McMurry coupling for the synthesis of indolophanes and cis-stilbenophanes. Tetrahedron Lett 2004. [DOI: 10.1016/j.tetlet.2004.06.020] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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15
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García-Moreno I, Costela A, Campo L, Sastre R, Amat-Guerri F, Liras M, López Arbeloa F, Bañuelos Prieto J, López Arbeloa I. 8-Phenyl-Substituted Dipyrromethene·BF2 Complexes as Highly Efficient and Photostable Laser Dyes. J Phys Chem A 2004. [DOI: 10.1021/jp0312464] [Citation(s) in RCA: 78] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | - R. Sastre
- Instituto de Ciencia y Tecnología de Polímeros, C.S.I.C., Juan de la Cierva 3, 28006 Madrid, Spain
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Gibe R, Green JR, Davidson G. Indolophanetetrayne cobalt complexes via Nicholas reactions. Org Lett 2003; 5:1003-5. [PMID: 12659559 DOI: 10.1021/ol027564n] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[reaction: see text] Indole N-substituted diyne tetracobalt complexes (4) undergo a Lewis acid mediated dimerization-cyclization reaction through the indole 3-position to afford indolophanetetrayne cobalt complexes (7). Substitution of the indole fragment of (4) with a 3-methyl function allows analogous formation of indolophanetetrayne complex (9), linked through the indole 2-position.
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Affiliation(s)
- Romelo Gibe
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, ON, N9B 3P4, Canada
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Bodwell GJ, Li J. Concise synthesis and transannular inverse electron demand Diels-Alder reaction of [3](3,6)pyridazino[3](1,3)indolophane. Rapid access to a pentacyclic indoloid system. Org Lett 2002; 4:127-30. [PMID: 11772107 DOI: 10.1021/ol017014+] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[reaction: see text] The title compound was synthesized concisely from indole. A 2-fold sequential hydroboration/Suzuki-Miyaura cross-coupling was employed to generate the cyclophane. When heated in N,N-diethylaniline, it underwent a transannular inverse electron demand Diels-Alder (IEDDA) reaction to form a pentacyclic product, which appears to be well suited as a precursor to a variety of indole alkaloids such as strychnine.
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Affiliation(s)
- Graham J Bodwell
- Department of Chemistry, Memorial University of Newfoundland, St. John's, Newfoundland, Canada, A1B 3X7.
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Ortner B, Waibel R, Gmeiner P. Indoloparacyclophanes: Synthesis and Dopamine Receptor Binding of a Novel Arylbioisostere. Angew Chem Int Ed Engl 2001. [DOI: 10.1002/1521-3757(20010401)113:7<1323::aid-ange1323>3.0.co;2-i] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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19
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Ortner B, Waibel R, Gmeiner P. Indoloparacyclophanes: Synthesis and Dopamine Receptor Binding of a Novel Arylbioisostere This work was supported by the Fonds der Chemischen Industrie. Angew Chem Int Ed Engl 2001; 40:1283-1285. [PMID: 11301452 DOI: 10.1002/1521-3773(20010401)40:7<1283::aid-anie1283>3.0.co;2-#] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Birgit Ortner
- Lehrstuhl für Pharmazeutische Chemie Emil Fischer Centrum Friedrich-Alexander-Universität Schuhstrasse 19, 91052 Erlangen (Germany)
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