1
|
Mayes BA, Arumugasamy J, Baloglu E, Bauer D, Becker A, Chaudhuri N, Latham GM, Li J, Mathieu S, McGarry FP, Rosinovsky E, Stewart A, Trochet C, Wang J, Moussa A. Synthesis of a Nucleoside Phosphoramidate Prodrug Inhibitor of HCV NS5B Polymerase: Phenylboronate as a Transient Protecting Group. Org Process Res Dev 2014. [DOI: 10.1021/op500042u] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Benjamin A. Mayes
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | | | - Erkan Baloglu
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - David Bauer
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Alan Becker
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Narayan Chaudhuri
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - G. Mark Latham
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Jie Li
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Steve Mathieu
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - F. Patrick McGarry
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Elodie Rosinovsky
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Alistair Stewart
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Christophe Trochet
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Jingyang Wang
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| | - Adel Moussa
- Idenix
Pharmaceuticals Inc., 320 Bent Street, Cambridge, Massachusetts 02141, United States
| |
Collapse
|
3
|
Sekine M. DNA synthesis without base protection. CURRENT PROTOCOLS IN NUCLEIC ACID CHEMISTRY 2004; Chapter 3:Unit 3.10. [PMID: 18428925 DOI: 10.1002/0471142700.nc0310s18] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
DNA synthesis can be achieved by using O-selective methods for internucleotide bond formation. This greatly simplifies the synthesis of oligodeoxyribonucleotides by eliminating the need for nucleobase protection and deprotection steps. This unit describes strategies that can be used for DNA synthesis without base protection. The discussion includes synthesis of phosphoramidite and H-phosphonate monomers, solid-phase assembly by the phosphoramidite and H-phosphonate methods, and future prospects for DNA synthesis using N-unprotected approaches.
Collapse
|
4
|
Hayakawa Y. Toward an Ideal Synthesis of Oligonucleotides: Development of a Novel Phosphoramidite Method with High Capability. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2001. [DOI: 10.1246/bcsj.74.1547] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
|
5
|
Abstract
Oligonucleotide synthesis via methods without nucleobase protection (N-unprotected methods) is briefly reviewed. The N-unprotected methods are advantageous in the following respects over conventional approaches that use protectors, generally, acyl protectors for the nucleobase (N-protected method). Two steps, introduction and removal of the protecting groups, are eliminated, and consequently use of undesirable reagents involved in these steps are avoided. In the synthesis of DNA oligomers, the risk of depurination of deoxyadenosine and deoxyguanosine derivatives, which is a serious problem in the N-protected methods, is considerably reduced. The range of synthesizable artificial analogues bearing base-labile functions is extended because harsh base treatment for the deprotection is eliminated.
Collapse
Affiliation(s)
- Y Hayakawa
- Laboratory of Bioorganic Chemistry, Graduate School of Human Informatics, Nagoya University, Chikusa, 464-8601, Nagoya, Japan.
| | | | | |
Collapse
|
7
|
Heliński J, Da̧bkowski W, Michalski J. N,N-diisopropyl-O-P-nitrophenyl-P-methylphosphonoamidite: novel difunctional PIII reagent in oligonucleoside methylphosphonate synthesis containing 4-nitrophenoxy group. Tetrahedron Lett 1991. [DOI: 10.1016/s0040-4039(00)93513-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
8
|
Taylor JS, Nadji S. Unraveling the origin of the major mutation induced by ultraviolet light, the C→T transition at dTpdC sites. A DNA synthesis building block for the cis-syn cyclobutane dimer of dTpdU. Tetrahedron 1991. [DOI: 10.1016/s0040-4020(01)81791-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
9
|
Watanabe Y, Nakahira H, Bunya M, Ozaki S. An efficient method for polyphosphorylation of inositol derivatives. Tetrahedron Lett 1987. [DOI: 10.1016/s0040-4039(00)95572-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
12
|
Fourrey JL, Varenne J. Preparation and phosphorylation reactivity of -nonacylated nucleoside phosphoramidites. Tetrahedron Lett 1985. [DOI: 10.1016/s0040-4039(00)98130-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
13
|
Hayakawa Y, Uchiyama M, Noyori R. A convenient method for the formation of internucleotide linkage. Tetrahedron Lett 1984. [DOI: 10.1016/0040-4039(84)80051-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
14
|
Hayakawa Y, Aso Y, Uchiyama M, Noyori R. Chemoselective phosphorylation of -unprotected nucleosides via aluminum alkoxides. Tetrahedron Lett 1983. [DOI: 10.1016/s0040-4039(00)94162-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|