1
|
Levterov VV, Panasiuk Y, Sahun K, Stashkevych O, Badlo V, Shablykin O, Sadkova I, Bortnichuk L, Klymenko-Ulianov O, Holota Y, Lachmann L, Borysko P, Horbatok K, Bodenchuk I, Bas Y, Dudenko D, Mykhailiuk PK. 2-Oxabicyclo[2.2.2]octane as a new bioisostere of the phenyl ring. Nat Commun 2023; 14:5608. [PMID: 37783681 PMCID: PMC10545790 DOI: 10.1038/s41467-023-41298-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 08/30/2023] [Indexed: 10/04/2023] Open
Abstract
The phenyl ring is a basic structural element in chemistry. Here, we show the design, synthesis, and validation of its new saturated bioisostere with improved physicochemical properties - 2-oxabicyclo[2.2.2]octane. The design of the structure is based on the analysis of the advantages and disadvantages of the previously used bioisosteres: bicyclo[1.1.1]pentane, bicyclo[2.2.2]octane, and cubane. The key synthesis step is the iodocyclization of cyclohexane-containing alkenyl alcohols with molecular iodine in acetonitrile. 2-Oxabicyclo[2.2.2]octane core is incorporated into the structure of Imatinib and Vorinostat (SAHA) drugs instead of the phenyl ring. In Imatinib, such replacement leads to improvement of physicochemical properties: increased water solubility, enhanced metabolic stability, and reduced lipophilicity. In Vorinostat, such replacement results in a new bioactive analog of the drug. This study enhances the repertoire of available saturated bioisosteres of (hetero)aromatic rings for the use in drug discovery projects.
Collapse
Affiliation(s)
| | | | - Kateryna Sahun
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Valentyn Badlo
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Oleh Shablykin
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
- V. P. Kukhar IBOPC of the NASciences of Ukraine, Academician Kukhar Str. 1, 02094, Kyiv, Ukraine
| | - Iryna Sadkova
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Lina Bortnichuk
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Yuliia Holota
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Petro Borysko
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Iryna Bodenchuk
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Yuliia Bas
- Taras Shevchenko National University of Kyiv, Chemistry Department, Volodymyrska 64, 01601, Kyiv, Ukraine
| | - Dmytro Dudenko
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | |
Collapse
|
2
|
Kh. Faizullina L, Khalilova YA, Sh. Karamysheva L, Salikhov SM, Valeev FA. The synthetic potential of α,α-diallylcyrene. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.07.037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
|
7
|
Abstract
A microbial strain, Klebsiella oxytoca KS3D, has been isolated which is capable of exploiting arylsulfonates as a sole source of sulfur during growth. The desulfurization catalyzed by intact K. oxytoca KS3D results in the conversion of arylsulfonates into the corresponding phenols. Even arylsulfonates carrying substituents which significantly alter steric and electronic characteristics are substrates. Only a single regioisomer is produced from substituted arylsulfonates. Based on the products formed from the biocatalytic desulfurizations and incorporation of isotopic oxygen in phenolic product when the desulfurization is run under 18O-enriched oxygen, hydrolysis mechanisms can be eliminated from consideration. Two reaction types which might mimic the chemistry occurring during microbial desulfurization of arylsulfonates were examined. The first reaction involved conversion of appropriately substituted arylsulfonates into phenols by single electron reduction followed by reaction of the radical anions with molecular oxygen. A second reaction using intramolecular reaction of arylsulfonates and arylsulfones with alkoxy radicals failed to achieve desulfurization. In addition to mechanistic evaluation, desulfurization of arylsulfonates catalyzed by K. oxytoca KS3D is examined from the perspective of its relevance to desulfurization of the organosulfur components of coal and its possible use for industrial manufacture of phenols.
Collapse
Affiliation(s)
- M W Dudley
- Department of Chemistry, Michigan State University, East Lansing 48824
| | | |
Collapse
|