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Meier E, Seichter W, Mazik M. Combination of Hydrogen and Halogen Bonds in the Crystal Structures of 5-Halogeno-1 H-isatin-3-oximes: Involvement of the Oxime Functionality in Halogen Bonding. Molecules 2024; 29:1174. [PMID: 38474688 DOI: 10.3390/molecules29051174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/25/2024] [Accepted: 02/27/2024] [Indexed: 03/14/2024] Open
Abstract
Various functional groups have been considered as acceptors for halogen bonds, but the oxime functionality has received very little attention in this context. In this study, we focus on the analysis of the hydrogen and halogen bond preferences observed in the crystal structures of 5-halogeno-1H-isatin-3-oximes. These molecules can be involved in various non-covalent interactions, and the competition between these interactions has a decisive influence on their self-organization. In particular, we were interested to see whether the crystal structures of 5-halogeno-1H-isatin-3-oximes, especially bromine- and iodine-substituted ones, are characterized by the presence of halogen bonds formed with the oxime functionality. The oxime group proved its ability to compete with the other strong donor and acceptor sites by participating in the formation of cyclic hydrogen-bonded heterosynthons oxime∙∙∙amide and Ooxime∙∙∙Br/I halogen bonds.
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Affiliation(s)
- Eric Meier
- Institut Für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Straße 29, 09596 Freiberg, Germany
| | - Wilhelm Seichter
- Institut Für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Straße 29, 09596 Freiberg, Germany
| | - Monika Mazik
- Institut Für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Straße 29, 09596 Freiberg, Germany
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Rosin R, Seichter W, Schwarzer A, Mazik M. 1,8-Naphthyridinecarbaldehydes and Their Methyl-Substituted Precursors: Synthesis, Molecular Structures, Supramolecular Motifs and Trapped Water Clusters. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701193] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Robert Rosin
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Anke Schwarzer
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Monika Mazik
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
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3
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Klein C, Fischer C, Seichter W, Schwarzer A, Weber E. Crystal structures of benzil monoximes controlled through configurational isomerism, molecular substitution and external complexation. CrystEngComm 2011. [DOI: 10.1039/c0ce00620c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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4
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Mazik M, Buthe AC. Recognition properties of receptors based on dimesitylmethane-derived core: Di- vs. monosaccharide preference. Org Biomol Chem 2009; 7:2063-71. [DOI: 10.1039/b901173k] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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5
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Mazik M, Buthe AC. Highly effective receptors showing di- vs. monosaccharide preference. Org Biomol Chem 2008; 6:1558-68. [DOI: 10.1039/b719212f] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Mazik M, Bläser D, Boese R. α,β-Unsaturated Ketoximes Carrying a Terminal Pyridine or Quinoline Subunit as Building Blocks for Supramolecular Syntheses. J Org Chem 2005; 70:9115-22. [PMID: 16268580 DOI: 10.1021/jo051115u] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[Structure: see text]. The crystal structures of a new series of alpha,beta-unsaturated ketoximes, 8-14, carrying the terminal 4-pyridinyl, 3-pyridinyl, or 4-quinolinyl subunit have been investigated by X-ray structural analysis. The dominating intermolecular interaction in all structures, except 11, is the head-tail OH...N hydrogen bond between the oxime moiety and the nitrogen atom of the heterocyclic unit. This intermolecular interaction generates infinite chains, which are cross-linked by CH...O/N/Cl or CH...pi interactions. Compound 10 has been shown to adopt a double-helical structure in the crystalline state. Compound 11 represents the only case where the unexpected head-head NOH...N(OH) hydrogen bonds determine the crystal packing. Both hydrogen-bonding and aromatic interactions stabilize the crystal structures of 8-14.
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Affiliation(s)
- Monika Mazik
- Institut für Organische Chemie der Technischen Universität Braunschweig, Hagenring 30, 38106 Braunschweig, Germany.
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A novel supramolecular assembly of 3,5-dinitro-4-methylbenzoic acid and trans-1,2-bis(4-pyridyl)ethene. Tetrahedron Lett 2005. [DOI: 10.1016/j.tetlet.2005.02.070] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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8
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Kato K, Aburaya K, Matsumoto M, Tohnai N, Miyata M. A Novel Double-helical Assembly in Inclusion Crystals of Fumaropimaric Acid. CHEM LETT 2003. [DOI: 10.1246/cl.2003.952] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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9
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Bruton EA, Brammer L, Christopher Pigge F, Aakeröy CB, Leinen DS. Hydrogen bond patterns in aromatic and aliphatic dioximes. NEW J CHEM 2003. [DOI: 10.1039/b301045g] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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11
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12
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Aakeröy CB, Beatty AM, Leinen DS. Supramolecular assembly of low-dimensional silver(i) architectures: testing the reliability of the self-complementary oxime⋯oxime hydrogen-bond interaction. CrystEngComm 2002. [DOI: 10.1039/b202303m] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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14
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15
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Abstract
Hydrogen bonds are like human beings in the sense that they exhibit typical grouplike behavior. As an individual they are feeble, easy to break, and sometimes hard to detect. However, when acting together they become much stronger and lean on each other. This phenomenon, which in scientific terms is called cooperativity, is based on the fact that "1+1 is more than 2". By using this principle, chemists have developed a wide variety of chemically stable structures that are based on the reversible formation of multiple hydrogen bonds. More than 20 years of fundamental studies on these phenomena have gradually developed into a new discipline within the field of organic synthesis, and is nowadays called "noncovalent synthesis". This review describes noncovalent synthesis based on the reversible formation of multiple hydrogen bonds. Starting with a thorough description of what the "hydrogen bond" really is, it guides the reader through a variety of bimolecular and higher order assemblies and exemplifies the general principles that determine their stability. Special focus is given to reversible capsules based on hydrogen-bonding interactions that exhibit interesting encapsulation phenomena. Furthermore, the role of hydrogen-bond formation in self-replicating processes is actively discussed, and finally the review briefly summarizes the development of novel materials (nanotubes, liquid crystals, polymers, etc.) and principles (dynamic libraries) that recently have emanated from this intriguing field of research.
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Affiliation(s)
- Leonard J. Prins
- Laboratory of Supramolecular Chemistry and Technology MESA(+) Research Institute University of Twente P.O. Box 217, 7500 AE Enschede (The Netherlands)
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Abstract
2,2'-Biimidazoles were synthesized by palladium(0)-catalyzed coupling of 2-iodoimidazoles bearing an alkyl and an ester group at the 4- and 5-positions, respectively. The products were found to be fluorescent and moderately soluble in organic solvents. Three biimidazoles were subjected to single crystal X-ray diffraction analysis. In all three instances, adjacent molecules were found to be bound together in the solid state by pairs of N-H...N hydrogen bonds, forming twisted ribbon-like columns which resemble double helices. The amount of helical twist observed between neighboring biimidazole subunits in these helices varies with the identity of the alkyl and ester groups; in two cases it is approximately 60 degrees, whereas in the third it is about 90 degrees. Mass spectra of six different biimidazoles display ions with masses corresponding to dimers; this indicates that these compounds retain some affinity for each other in the gas phase. The three most soluble biimidazoles also show mass spectrometric peaks ascribable to trimers and tetramers. The solution-phase aggregation tendencies of these latter three compounds were studied by vapor pressure osmometry. In each case, the apparent molecular weight in 1,2-dichloroethane solution is higher than would be expected for free monomers.
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Affiliation(s)
- W E Allen
- Department of Chemistry and Biochemistry, Institute for Cellular and Molecular Biology, The University of Texas at Austin, 78712-1167, USA
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Forristal I, Lowman J, Afarinkia K, Steed JW. A helical structure held together by phosphonate C–H⋯O hydrogen bonds. CrystEngComm 2001. [DOI: 10.1039/b100949o] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Abstract
A series of racemic [7]helicenes have been prepared and characterized both in solution and in the solid state. Despite the helicenes having the ability to self-assemble in a variety of stereochemical and topological relationships, they formed only enantiomerically pure dimers held together by two pairs of cooperative hydrogen bonds. The self-assembly process was enantiospecific in solution and diastereoselective in the crystal.
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Mazik M, Bläser D, Boese R. The potential of CH···N interactions in determining the crystal structures of novel 3,4-disubstituted-5-pyridinyl-isoxazoles. Tetrahedron Lett 2000. [DOI: 10.1016/s0040-4039(00)00906-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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20
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Aakeröy CB, Beatty AM, Leinen DS. New building blocks for crystal engineering. Syntheses and crystal structures of oxime-substituted pyridines. CrystEngComm 2000. [DOI: 10.1039/b006043g] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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