The early days of electron microscopy of nerve tissue and membranes

A perfect confluence of physiology and morphology: discovery of the transverse tubular system and inward spread of activation in skeletal muscle

By early 1954, there existed a plausible model of muscle contraction called the sliding filament model. In addition, the nature of muscle excitation was understood. Surprisingly, the link between the membrane excitation and contraction was entirely unknown. This dilemma has been called the time-distance paradox. The path to discovery of the missing link between excitation and contraction was a rocky one involving the simultaneous but independent development of physiological and morphological studies. From the viewpoint of physiology, significant events included the most thrilling moment of a scientific life, confirmation of a hypothesis that was wrong, a major surprise and shock, a result not expected from evolutionary relationships, and disappointment and confusion before clarity. From the viewpoint of morphology, there was the exciting beginning and rapid development of biological electron microscopy, heroic experiments, the importance of sample preparative procedures, and discovery of clues from the old light microscopic literature. However, it was the confluence of physiology and morphology that brought clarity and a major advance in understanding, leading to the discovery of the transverse tubular system and inward spread of activation in skeletal muscle.

Flexible Players within the Sheaths: The Intrinsically Disordered Proteins of Myelin in Health and Disease

Myelin ensheathes selected axonal segments within the nervous system, resulting primarily in nerve impulse acceleration, as well as mechanical and trophic support for neurons. In the central and peripheral nervous systems, various proteins that contribute to the formation and stability of myelin are present, which also harbor pathophysiological roles in myelin disease. Many myelin proteins have common attributes, including small size, hydrophobic segments, multifunctionality, longevity, and regions of intrinsic disorder. With recent advances in protein biophysical characterization and bioinformatics, it has become evident that intrinsically disordered proteins (IDPs) are abundant in myelin, and their flexible nature enables multifunctionality. Here, we review known myelin IDPs, their conservation, molecular characteristics and functions, and their disease relevance, along with open questions and speculations. We place emphasis on classifying the molecular details of IDPs in myelin, and we correlate these with their various functions, including susceptibility to post-translational modifications, function in protein–protein and protein–membrane interactions, as well as their role as extended entropic chains. We discuss how myelin pathology can relate to IDPs and which molecular factors are potentially involved.

Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning

Synaptic vesicles (SVs) are a key component of neuronal signaling and fulfil different roles depending on their composition. In electron micrograms of neurites, two types of vesicles can be distinguished by morphological criteria, the classical “clear core” vesicles (CCV) and the typically larger “dense core” vesicles (DCV), with differences in electron density due to their diverse cargos. Compared to CCVs, the precise function of DCVs is less defined. DCVs are known to store neuropeptides, which function as neuronal messengers and modulators [1]. In C. elegans, they play a role in locomotion, dauer formation, egg-laying, and mechano- and chemosensation [2]. Another type of DCVs, also referred to as granulated vesicles, are known to transport Bassoon, Piccolo and further constituents of the presynaptic density in the center of the active zone (AZ), and therefore are important for synaptogenesis [3].

To better understand the role of different types of SVs, we present here a new automated approach to classify vesicles. We combine machine learning with an extension of our previously developed vesicle segmentation workflow, the ImageJ macro 3D ART VeSElecT. With that we reliably distinguish CCVs and DCVs in electron tomograms of C. elegans NMJs using image-based features. Analysis of the underlying ground truth data shows an increased fraction of DCVs as well as a higher mean distance between DCVs and AZs in dauer larvae compared to young adult hermaphrodites. Our machine learning based tools are adaptable and can be applied to study properties of different synaptic vesicle pools in electron tomograms of diverse model organisms.

FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms

Automatic image reconstruction is critical to cope with steadily increasing data from advanced microscopy. We describe here the Fiji macro 3D ART VeSElecT which we developed to study synaptic vesicles in electron tomograms. We apply this tool to quantify vesicle properties (i) in embryonic Danio rerio 4 and 8 days past fertilization (dpf) and (ii) to compare Caenorhabditis elegans N2 neuromuscular junctions (NMJ) wild-type and its septin mutant (unc-59(e261)). We demonstrate development-specific and mutant-specific changes in synaptic vesicle pools in both models. We confirm the functionality of our macro by applying our 3D ART VeSElecT on zebrafish NMJ showing smaller vesicles in 8 dpf embryos then 4 dpf, which was validated by manual reconstruction of the vesicle pool. Furthermore, we analyze the impact of C. elegans septin mutant unc-59(e261) on vesicle pool formation and vesicle size. Automated vesicle registration and characterization was implemented in Fiji as two macros (registration and measurement). This flexible arrangement allows in particular reducing false positives by an optional manual revision step. Preprocessing and contrast enhancement work on image-stacks of 1nm/pixel in x and y direction. Semi-automated cell selection was integrated. 3D ART VeSElecT removes interfering components, detects vesicles by 3D segmentation and calculates vesicle volume and diameter (spherical approximation, inner/outer diameter). Results are collected in color using the RoiManager plugin including the possibility of manual removal of non-matching confounder vesicles. Detailed evaluation considered performance (detected vesicles) and specificity (true vesicles) as well as precision and recall. We furthermore show gain in segmentation and morphological filtering compared to learning based methods and a large time gain compared to manual segmentation. 3D ART VeSElecT shows small error rates and its speed gain can be up to 68 times faster in comparison to manual annotation. Both automatic and semi-automatic modes are explained including a tutorial.

The presynaptic dense projection of the Caenorhabditis elegans cholinergic neuromuscular junction localizes synaptic vesicles at the active zone through SYD-2/liprin and UNC-10/RIM-dependent interactions

The active zone (AZ) of chemical synapses is a specialized area of the presynaptic bouton in which vesicles fuse with the plasma membrane and release neurotransmitters. Efficient signaling requires synaptic vesicles (SVs) to be recruited, primed, and retained at the AZ, in close proximity to voltage-dependent calcium channels that are activated during presynaptic depolarization. The electron-dense specializations at the AZ might provide a molecular platform for the spatial coordination of these different processes. To investigate this hypothesis, we examined high-resolution three-dimensional models of Caenorhabditis elegans cholinergic neuromuscular junctions generated by electron tomography. First, we found that SVs are interconnected within the bouton by filaments similar to those described in vertebrates. Second, we resolved the three-dimensional structure of the dense projection centered in the AZ. The dense projection is a more complex structure than previously anticipated, with filaments radiating from a core structure that directly contact SVs in the interior of the bouton as well as SVs docked at the plasma membrane. Third, we investigated the functional correlate of these contacts by analyzing mutants disrupting two key AZ proteins: UNC-10/RIM and SYD-2/liprin. In both mutants, the number of contacts between SVs and the dense projection was significantly reduced. Similar to unc-10 mutants, the dependence of SV fusion on extracellular calcium concentration was exacerbated in syd-2 mutants when compared with the wild type. Hence, we propose that the dense projection ensures proper coupling of primed vesicles with calcium signaling by retaining them at the AZ via UNC-10/RIM and SYD-2/liprin-dependent mechanisms.

Conical electron tomography of a chemical synapse: polyhedral cages dock vesicles to the active zone

In this study, we tested the hypothesis that the structure of the active zone of chemical synapses has remained uncertain because of limitations of conventional electron microscopy. To resolve these limitations, we reconstructed chemical synapses of rat neocortex, the archetypical "average" synapse, by conical electron tomography, a method that exhibits an isotropic in plane resolution of approximately 3 nm and eliminates the need to impose symmetry or use averaging methods to increase signal-to-noise ratios. Analysis of 17 reconstructions by semiautomatic density segmentation indicated that the active zone was constructed of a variable number of distinct "synaptic units" comprising a polyhedral cage and a corona of approximately seven vesicles. The polyhedral cages measured approximately 60 nm in diameter, with a density of approximately 44/microm2 and were associated with vesicles at the active zone ("first tier"). Vesicles in this first-tier position represented approximately 7.5% of the total number of vesicles in the terminal and were contiguous, hemifused (approximately 4% of total), or fully fused (approximately 0.5% of total) to the plasma membrane. Our study supports the hypothesis that rat neocortical synapses are constructed of variable numbers of distinct synaptic units that facilitate the docking of vesicles to the active zone and determine the number of vesicles available for immediate release.

Local refinement: an attempt to correct for shrinkage and distortion in electron tomography

A critical problem in electron tomography is the deformation of the specimen due to radiation, or "shrinkage," which interferes with image alignment and thereby limits resolution. Here, we describe a general strategy for refining preliminary reconstructions which allows the damage due to the shrinkage of plastic-embedded thin sectioned specimens (50-80 nm) to be corrected. The basic steps of the strategy involve: (a) the partition of the preliminary reconstruction into sub-volumes; (b) the extraction of corresponding sub-areas for each sub-volume from the micrographs of the tilt series; (c) the re-projection of each sub-volume according to the orientation parameters; and (d) the refinement of these parameters by correlating each sub-area to the corresponding computed projection. We tested the strategy by refining chemical synapses reconstructed from series imaged with conical, double and single tilt geometries. The results gathered with local refinement were evaluated by visually inspecting the structure of biological membranes in the maps. In an effort to quantify these improvements, we studied the refined maps using correlation criteria and mapped the corrections applied to the orientation parameters in each sub-volume of the reconstruction. Simulation experiments complemented the data gathered by correlation analysis. Based on these criteria, we concluded that local refinement significantly improves the overall quality of the reconstructions of chemical synapses calculated from series imaged with conical and double tilt geometries.

Conical electron tomography of a chemical synapse: vesicles docked to the active zone are hemi-fused

We have used thin sectioning and conical electron tomography to determine the three-dimensional structure of synaptic vesicles that were associated (docked) at release sites of the presynaptic membrane, called active-zones. Vesicles docked at the active zone occupied a strategic location: they formed regions of contact with the plasma membrane on one side and with that of one or more vesicles located deeper within the presynaptic terminal on the other side. The region of contact with the active zone measured approximately 15 nm in diameter ( approximately 2% of the vesicle's surface) and contained a smaller approximately 6 nm region where the proximal leaflets merged (hemi-fused). Hemi-fusion was only observed on the side of vesicles in contact with the active zone; at the side of contact between neighboring vesicles, the membranes were not hemi-fused. Approximately three-fourths of the docked vesicles contained hemi-fused regions. Vesicles fully fused to the active zone (exhibiting pores that appeared as interruptions of a single membrane) were less frequently observed ( approximately 1 of 10 hemi-fused vesicles). In conclusion, our observations in cortical synapses strengthen the hypothesis that hemi-fusion is a stable intermediary that precedes full fusion and release.

Conical tomography II: A method for the study of cellular organelles in thin sections

We have used conical electron tomography in order to reconstruct neuronal organelles in thin sections of plastic embedded rat somato-sensory cortical tissue. The conical tilt series were collected at a 55 degrees tilt and at 5 degrees rotations, aligned using gold particles as fiduciary markers, and reconstructed using the weighted back projection algorithm. After a refinement process based on projection matching, the 3D maps showed the "unit membrane pattern" along the entire reconstructed volume. This pattern is indicative of the bilayer arrangement of phospholipids in biological membranes. Based on Fourier correlation methods as well as the visualization of the "unit membrane" pattern, we estimated resolutions of approximately 4 nm. To illustrate the prospective advantages of conical tomography, we segmented "coated" vesicles in the reconstructed volumes. These vesicles were comprised of a central core enclosing a small lumen, and a protein "coating" extending into the cytoplasm. The "coated" vesicle was attached to the plasma membrane through a complex structure shaped as an arch where the ends are attached to the membrane and the crook is connected to the vesicle. We concluded that conical electron tomography of thin-sectioned specimens provides a powerful experimental approach for studying thin-sectioned neuronal organelles at resolution levels of approximately 4 nm.

Cortical interneurons: from Cajal to 2001

After the collective work of many investigators, beginning with the early studies of Cajal, the following main [figure: see text] conclusions may be drawn regarding the morphology, biochemical characteristics and synaptic connections of interneurons: 1. Interneurons show a great variety of morphological, biochemical and physiological types. They constitute approximately 15-30% of the total population of neurons. 2. Because of the heterogeneity of interneurons and the lack of consensus as to which characteristics are essential for an individual neuron to be considered a member of a given cell type, there is no definitive classification of interneurons. Nevertheless, certain interneurons can be readily recognized by their unique morphological characteristics, or they can be more generally divided into subgroups on the basis of their biochemical characteristics, patterns of axonal arborization, or synaptic connections with pyramidal cells. 3. All interneurons have a more or less dense axonal arborization distributed near the cell body, mainly within the area occupied by their dendritic field. However, some interneurons may display, in addition, prominent long, horizontal or vertical axonal collaterals. [figure: see text] 4. Most interneurons form symmetrical synapses with both pyramidal cells and other interneurons, with the exception of chandelier cells, which only form synapses with the axon initial segment of pyramidal cells. Furthermore, interneurons are not only connected by chemical synapses (unidirectional connections), but they may also form electrical synapses through gap junctions (bidirectional) in a specific manner. 5. With the exception of chandelier cells, other types of interneurons include among their synaptic targets more than one type of postsynaptic element. But the degree of preference for these postsynaptic elements varies markedly between different types of interneurons. 6. The number of synapses made by a single axon originating from a given interneuron on another neuron is on the order of ten or less. Since, in general, cortical neurons receive many more interneuronal (symmetrical) synapses (on the order of a few hundred or thousand), a considerable convergence of various types of interneurons to pyramidal cells and interneurons appears to occur. 7. Most interneurons are GABAergic and also express a number of different neurotransmitters (or their synthesizing enzymes), neuropeptides and calcium-binding proteins. Thus, interneurons are, biochemically, widely heterogeneous. 8. Some of the morphologically identifiable neurons can be characterized by their particular biochemical characteristics, and some biochemically definable subgroups of interneurons display a particular morphology. However, different morphological types of GABAergic neurons may share one or several neurotransmitters, neuroactive substances and/or other molecular markers. Therefore, a great variety of subgroups of morphologically and biochemically identifiable neurons exist. 9. Some interneurons appear to be common to all species and, therefore, may be considered as basic elements of cortical circuits, whereas others may represent evolutionary specializations which are characteristic of particular mammalian subgroups and, thus, cannot be taken as essential, or general, features of cortical organization. 10. Given the complexity of cortical circuits and the areal and species differences, it is impossible to draw a "sufficiently" complete basic diagram of cortical microcircuitry that is valid for all cortical areas and species.

Morphology of cryofixed myelin sheath

The myelin sheath is formed by concentrically apposed membrane pairs and shows a regularly layered pattern of alternating light lines and dense lines. Observation of cryofixed myelin demonstrated that the structures represent aqueous spaces. All lamellae of the myelin sheath show globular aggregates of particles and these particles are corresponding with aggregates observed after detergent extraction of the myelin. Experimental fusion of myelin lamellae shows an intermixing of the globular particles or subunits. The interaction of these structural units in the bilayers may provide the stability of the myelin lamellae and their lamination.

Ultrastructure of electrical synapses: review

This article reviews studies providing information on the ultrastructure of electrical synapses. Although the review focuses on electron-microscopic investigations, its aim is to examine how the structure of an electrical synapse relates to its function. It begins by presenting a historical overview of the early studies which were responsible for the recognition of electrical synapses. The structure of gap junctions which are the morphological correlates of electrical synapses is illustrated and the ultrastructure and function of the two types of electrical synapse, rectifying and non-rectifying, described. Recent papers investigating the ultrastructure of electrical and mixed electrical-chemical synapses in invertebrates and vertebrates are reviewed. For earlier references, the reader is directed to previous reviews on the subject. Much new information, however, on the structure and formation of electrical synapses has been obtained from work on cultured neurons and from electron-microscopic, immunocytochemical, conformational and molecular studies. This article reviews those studies and in light of their findings, re-examines the relationships of the structure of electrical synapses with their function.

Cryo-electron microscopy of nervous tissue. A review

The present work attempts to demonstrate that cryofixation is a valuable method for the study of the nervous tissue. The use of the newly developed methods of cryofixation and freeze-etching without fixatives or cryoprotectants allows new exciting perspectives for the electron microscopical observation of cellular components, emphasizing their three-dimensional morphological structures. Significant contributions have been made on the fine structure of the cytoskeleton, cell membranes and cell organelles. The components of the cytoskeleton are distributed in different composition through the perikarya, dendrites and axon. The ubiquitous presence of the cytoskeleton suggests a crucial role in the functional activities of the neurons, especially in relation to the intracellular communication and to developmental and regeneration processes. Vitrified cellular membranes of myelin sheaths and rod outer segments have been observed in hydrated state by using cryofixation and cryotransfer techniques. These procedures allow new insights into the supramolecular structure and an approximation of morphological data to the present biophysical membrane model including a critical comparison with the current descriptions gained by conventional electron microscopy.

Cryo-electron microscopy of vitrified nerve myelin

The ultrastructure of rat optic and trigeminal nerve myelin was studied using different cryotechniques. Replicas of rapid cryofixed and deep-etched material were compared with cryosections of chemically unfixed specimens and also of glutaraldehyde-fixed specimens. Hydrated cryosections were analysed in a cryotransfer device. The data reported here show discrepancies with the current descriptions of myelin structure based on osmium-fixed and resin-embedded material. The structures called the major line (as a fusion of the cytoplasmic surfaces of the glial cells) in conventional electron microscopy and the intraperiod line (as a fusion of the outer surfaces) are seen in the present material to represent actually aqueous spaces. The extracellular space (E-space) is most sensitive to chemical fixation and other preparation procedures, and probably also expands under pathological conditions. The virtual C-space (cytoplasmic space = major line) is more stable. The cytoplasmic surfaces are most probably joined by globular proteins (myelin basic protein). The most compact organization of myelin is seen in fresh, unfixed nerves. A continuous bilayer could not be observed and the bilayer membrane showed particulate subunits.