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For: Peng J, Cheng D. Proteomic analysis of ubiquitin conjugates in yeast. Methods Enzymol 2007;399:367-81. [PMID: 16338369 DOI: 10.1016/s0076-6879(05)99025-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Number Cited by Other Article(s)
1
Yu K, Wang Z, Wu Z, Tan H, Mishra A, Peng J. High-Throughput Profiling of Proteome and Posttranslational Modifications by 16-Plex TMT Labeling and Mass Spectrometry. Methods Mol Biol 2021;2228:205-224. [PMID: 33950493 PMCID: PMC8458009 DOI: 10.1007/978-1-0716-1024-4_15] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
2
An Erg11 lanosterol 14-α-demethylase-Arv1 complex is required for Candida albicans virulence. PLoS One 2020;15:e0235746. [PMID: 32678853 PMCID: PMC7367482 DOI: 10.1371/journal.pone.0235746] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 06/23/2020] [Indexed: 02/07/2023]  Open
3
Mass Spectrometric Determination of Protein Ubiquitination. Methods Mol Biol 2019;1934:191-221. [PMID: 31256381 DOI: 10.1007/978-1-4939-9055-9_13] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
4
Chen SH, Shah AH, Segev N. Ypt31/32 GTPases and their F-Box effector Rcy1 regulate ubiquitination of recycling proteins. CELLULAR LOGISTICS 2014;1:21-31. [PMID: 21686101 DOI: 10.4161/cl.1.1.14695] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2010] [Revised: 12/31/2010] [Accepted: 01/03/2011] [Indexed: 11/19/2022]
5
Xu G, Jaffrey SR. Proteomic identification of protein ubiquitination events. Biotechnol Genet Eng Rev 2014;29:73-109. [PMID: 24568254 DOI: 10.1080/02648725.2013.801232] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
6
Choy A, Severo MS, Sun R, Girke T, Gillespie JJ, Pedra JHF. Decoding the ubiquitin-mediated pathway of arthropod disease vectors. PLoS One 2013;8:e78077. [PMID: 24205097 PMCID: PMC3804464 DOI: 10.1371/journal.pone.0078077] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 09/16/2013] [Indexed: 11/19/2022]  Open
7
Bustos D, Bakalarski CE, Yang Y, Peng J, Kirkpatrick DS. Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment. Mol Cell Proteomics 2012;11:1529-40. [PMID: 22729469 DOI: 10.1074/mcp.r112.019117] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
8
Na CH, Peng J. Analysis of ubiquitinated proteome by quantitative mass spectrometry. Methods Mol Biol 2012;893:417-29. [PMID: 22665315 DOI: 10.1007/978-1-61779-885-6_26] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
9
Davies AA, Ulrich HD. Detection of PCNA modifications in Saccharomyces cerevisiae. Methods Mol Biol 2012;920:543-67. [PMID: 22941627 DOI: 10.1007/978-1-61779-998-3_36] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
10
McKay SL, Johnson TL. A bird's-eye view of post-translational modifications in the spliceosome and their roles in spliceosome dynamics. MOLECULAR BIOSYSTEMS 2010;6:2093-102. [PMID: 20672149 PMCID: PMC4065859 DOI: 10.1039/c002828b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
11
Mirzaei H, Rogers RS, Grimes B, Eng J, Aderem A, Aebersold R. Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry. MOLECULAR BIOSYSTEMS 2010;6:2004-14. [PMID: 20694217 DOI: 10.1039/c005242f] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
12
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J. Systematic approach for validating the ubiquitinated proteome. Anal Chem 2008;80:4161-9. [PMID: 18433149 DOI: 10.1021/ac702516a] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
13
Peng JM. Evaluation of proteomic strategies for analyzing ubiquitinated proteins. BMB Rep 2008;41:177-83. [DOI: 10.5483/bmbrep.2008.41.3.177] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Xu P, Peng J. Characterization of polyubiquitin chain structure by middle-down mass spectrometry. Anal Chem 2008;80:3438-44. [PMID: 18351785 DOI: 10.1021/ac800016w] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
15
Tomlinson E, Palaniyappan N, Tooth D, Layfield R. Methods for the purification of ubiquitinated Proteins. Proteomics 2007;7:1016-22. [PMID: 17351889 DOI: 10.1002/pmic.200601008] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
16
Xu P, Peng J. Dissecting the ubiquitin pathway by mass spectrometry. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2006;1764:1940-7. [PMID: 17055348 PMCID: PMC1828906 DOI: 10.1016/j.bbapap.2006.09.004] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2006] [Revised: 08/30/2006] [Accepted: 09/06/2006] [Indexed: 11/27/2022]
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