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Mutanda I, Li J, Xu F, Wang Y. Recent Advances in Metabolic Engineering, Protein Engineering, and Transcriptome-Guided Insights Toward Synthetic Production of Taxol. Front Bioeng Biotechnol 2021; 9:632269. [PMID: 33614616 PMCID: PMC7892896 DOI: 10.3389/fbioe.2021.632269] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 01/11/2021] [Indexed: 01/02/2023] Open
Abstract
The diterpenoid paclitaxel (Taxol®) is a blockbuster anticancer agent that was originally isolated from the Pacific yew (Taxus brevifolia) five decades ago. Despite the wealth of information gained over the years on Taxol research, there still remains supply issues to meet increasing clinical demand. Although alternative Taxol production methods have been developed, they still face several drawbacks that cause supply shortages and high production costs. It is highly desired to develop biotechnological production platforms for Taxol, however, there are still gaps in our understanding of the biosynthetic pathway, catalytic enzymes, regulatory and control mechanisms that hamper production of this critical drug by synthetic biology approaches. Over the past 5 years, significant advances were made in metabolic engineering and optimization of the Taxol pathway in different hosts, leading to accumulation of taxane intermediates. Computational and experimental approaches were leveraged to gain mechanistic insights into the catalytic cycle of pathway enzymes and guide rational protein engineering efforts to improve catalytic fitness and substrate/product specificity, especially of the cytochrome P450s (CYP450s). Notable breakthroughs were also realized in engineering the pathway in plant hosts that are more promising in addressing the challenging CYP450 chemistry. Here, we review these recent advances and in addition, we summarize recent transcriptomic data sets of Taxus species and elicited culture cells, and give a bird's-eye view of the information that can be gleaned from these publicly available resources. Recent mining of transcriptome data sets led to discovery of two putative pathway enzymes, provided many lead candidates for the missing steps and provided new insights on the regulatory mechanisms governing Taxol biosynthesis. All these inferences are relevant to future biotechnological production of Taxol.
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Affiliation(s)
- Ishmael Mutanda
- Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Jianhua Li
- Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Fanglin Xu
- Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
- Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, He’nan University, Kaifeng, China
| | - Yong Wang
- Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
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Bioprospecting of Bioactive Metabolites from Monochaetia karstenii. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2020. [DOI: 10.22207/jpam.14.2.54] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Wang ZJ, Zhang W, Zhang JW, Guo MJ, Zhuang YP. Optimization of a broth conductivity controlling strategy directed by an online viable biomass sensor for enhancing Taxus cell growth rate and Taxol productivity. RSC Adv 2016. [DOI: 10.1039/c5ra26540a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In this work, we investigated the effects of a constant broth conductivity controlling strategy directed by an online viable biomass sensor on Taxol productivity ofTaxus chinensisvar.maireiin suspension cultivation.
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Affiliation(s)
- Ze-Jian Wang
- State Key Laboratory of Bioreactor Engineering
- East China University of Science and Technology
- Shanghai 200237
- China
- Department of Biotechnology
| | - Wei Zhang
- State Key Laboratory of Bioreactor Engineering
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Jian-Wen Zhang
- State Key Laboratory of Bioreactor Engineering
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Mei-Jin Guo
- State Key Laboratory of Bioreactor Engineering
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Ying-ping Zhuang
- State Key Laboratory of Bioreactor Engineering
- East China University of Science and Technology
- Shanghai 200237
- China
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Effects of Selected Physicochemical Parameters on Zerumbone Production of Zingiber zerumbet Smith Cell Suspension Culture. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2015; 2015:757514. [PMID: 25767555 PMCID: PMC4342077 DOI: 10.1155/2015/757514] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Revised: 12/08/2014] [Accepted: 12/08/2014] [Indexed: 11/18/2022]
Abstract
Zingiber zerumbet Smith is an important herb that contains bioactive phytomedicinal compound, zerumbone. To enhance cell growth and production of this useful compound, we investigated the growth conditions of cell suspension culture. Embryogenic callus generated from shoot bud was used to initiate cell suspension culture. The highest specific growth rate of cells was recorded when it was cultured in liquid Murashige and Skoog basal medium containing 3% sucrose with pH 5.7 and incubated under continuous shaking condition of 70 rpm for 16 h light and 8 h dark cycle at 24°C. Our results also revealed that the type of carbohydrate substrate, light regime, agitation speed, and incubation temperature could affect the production of zerumbone. Although the zerumbone produced in this study was not abundant compared to rhizome of Z. zerumbet, the possibility of producing zerumbone during early stage could serve as a model for subsequent improvement.
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Yue W, Ming QL, Lin B, Rahman K, Zheng CJ, Han T, Qin LP. Medicinal plant cell suspension cultures: pharmaceutical applications and high-yielding strategies for the desired secondary metabolites. Crit Rev Biotechnol 2014; 36:215-32. [PMID: 24963701 DOI: 10.3109/07388551.2014.923986] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The development of plant tissue (including organ and cell) cultures for the production of secondary metabolites has been underway for more than three decades. Plant cell cultures with the production of high-value secondary metabolites are promising potential alternative sources for the production of pharmaceutical agents of industrial importance. Medicinal plant cell suspension cultures (MPCSC), which are characterized with the feature of fermentation with plant cell totipotency, could be a promising alternative "chemical factory". However, low productivity becomes an inevitable obstacle limiting further commercialization of MPCSC and the application to large-scale production is still limited to a few processes. This review generalizes and analyzes the recent progress of this bioproduction platform for the provision of medicinal chemicals and outlines a range of trials taken or underway to increase product yields from MPCSC. The scale-up of MPCSC, which could lead to an unlimited supply of pharmaceuticals, including strategies to overcome and solution of the associated challenges, is discussed.
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Affiliation(s)
- Wei Yue
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China .,b School of Life Science , East China Normal University , Shanghai , China
| | - Qian-Liang Ming
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China
| | - Bing Lin
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China
| | - Khalid Rahman
- c Faculty of Science, School of Pharmacy and Biomolecular Sciences , Liverpool John Moores University , Byrom Street , Liverpool , UK , and
| | - Cheng-Jian Zheng
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China
| | - Ting Han
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China .,d School of Forestry and Biotechnology , ZheJiang Agriculture & Forestry University , Lin'an , Hangzhou , China
| | - Lu-Ping Qin
- a Department of Pharmacognosy, School of Pharmacy , Second Military Medical University , Shanghai , China
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Suh HW, Hyun SH, Kim SH, Lee SY, Choi HK. Metabolic profiling and enhanced production of phytosterols by elicitation with methyl jasmonate and silver nitrate in whole plant cultures of Lemna paucicostata. Process Biochem 2013. [DOI: 10.1016/j.procbio.2013.06.032] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Gao MB, Zhang W, Ruan CJ. Significantly improved taxuyunnanine C production in cell suspension cultures of Taxus chinensis by process intensification of repeated elicitation, sucrose feeding, and in situ adsorption. World J Microbiol Biotechnol 2011. [DOI: 10.1007/s11274-011-0690-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Pyo SH, Choi HJ. An improved high-performance liquid chromatography process for the large-scale production of paclitaxel. Sep Purif Technol 2011. [DOI: 10.1016/j.seppur.2010.11.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Marupudi NI, Han JE, Li KW, Renard VM, Tyler BM, Brem H. Paclitaxel: a review of adverse toxicities and novel delivery strategies. Expert Opin Drug Saf 2007; 6:609-21. [PMID: 17877447 DOI: 10.1517/14740338.6.5.609] [Citation(s) in RCA: 343] [Impact Index Per Article: 19.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Better known as Taxol (Bristol-Myers Squibb), paclitaxel is the first member of the taxane family to be used in cancer chemotherapy. The taxanes exert their cytotoxic effect by arresting mitosis through microtubule stabilization, resulting in cellular apoptosis. The use of paclitaxel as a chemotherapeutic agent has become a broadly accepted option in the treatment of patients with ovarian, breast and non-small cell lung cancers, malignant brain tumors, and a variety of other solid tumors. However, significant toxicities, such as myelosuppression and peripheral neuropathy, limit the effectiveness of paclitaxel-based treatment regimens. This review addresses the toxicities associated with paclitaxel treatment and describes existing and future strategies of paclitaxel administration directed at limiting these toxicities.
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Affiliation(s)
- Neena I Marupudi
- Johns Hopkins School of Medicine, Department of Neurological Surgery, Meyer 7-113, 600 North Wolfe Street, Baltimore, MD 21287, USA
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Choi HK, Yoon JH. Metabolomic profiling of Vitis vinifera cell suspension culture elicited with silver nitrate by 1H NMR spectrometry and principal components analysis. Process Biochem 2007. [DOI: 10.1016/j.procbio.2006.07.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Frense D. Taxanes: perspectives for biotechnological production. Appl Microbiol Biotechnol 2006; 73:1233-40. [PMID: 17124581 DOI: 10.1007/s00253-006-0711-0] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2006] [Revised: 10/06/2006] [Accepted: 10/10/2006] [Indexed: 11/25/2022]
Abstract
Taxol is a valuable plant-derived drug showing activity against various cancer types. Worldwide efforts had been made to overcome the supply problem, because the supply by isolation from the bark of the slow-growing yew trees is limited. Plant cell cultures as well as chemical and biotechnological semisynthesis are processes, which are intensively investigated for the production of taxanes paclitaxel (Taxol) and docetaxel (Taxotere) in the last few years. This article provides a comparison of the current research on taxane biosynthesis and production in yew cell cultures.
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Affiliation(s)
- Dieter Frense
- Institut für Bioprozess- und Analysenmesstechnik e.V., Rosenhof, 37308, Heilbad Heiligenstadt, Germany.
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Pyo SH, Cho JS, Choi HJ, Han BH. Evaluation of paclitaxel rearrangement involving opening of the oxetane ring and migration of acetyl and benzoyl groups. J Pharm Biomed Anal 2006; 43:1141-5. [PMID: 17029668 DOI: 10.1016/j.jpba.2006.08.026] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2006] [Revised: 08/26/2006] [Accepted: 08/30/2006] [Indexed: 11/29/2022]
Abstract
The stability of drug is a critical factor in quality control, drug efficacy, safety, storage, and production conditions. The rearrangement of paclitaxel, which involves opening of the oxetane ring and migration of acetyl group occurred on heating a powder of purified paclitaxel. Subsequently, the unusual migration of benzoyl groups progressed rapidly in organic solvents. These rearrangement derivatives were isolated carefully. The structures of the intermediate derivative A and the product derivative B were confirmed using (1)H NMR, high performance liquid chromatography (HPLC), and mass spectrometry. We proposed the rearrangement pathway here for the first time. Neither derivative exhibited bioactivity in SKOV3 (ovarian cancer) or MDA-MB-435 (breast cancer) cell culture assays.
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Affiliation(s)
- Sang-Hyun Pyo
- Samyang Genex Food & Bio Research Center, 63-2 Hwaam-Dong, Yuseong-Gu, Daejeon 305-717, South Korea.
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Pyo SH, Choi HJ, Han BH. Large-scale purification of 13-dehydroxybaccatin III and 10-deacetylpaclitaxel, semi-synthetic precursors of paclitaxel, from cell cultures of Taxus chinensis. J Chromatogr A 2006; 1123:15-21. [PMID: 16716338 DOI: 10.1016/j.chroma.2006.04.093] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2006] [Revised: 04/04/2006] [Accepted: 04/12/2006] [Indexed: 11/23/2022]
Abstract
The taxane derivatives 13-dehydroxybaccatin III (13-DHB III) and 10-deacetylpaclitaxel (10-DAP) can be used as semi-synthetic precursors of paclitaxel. These precursors were isolated in a simple and economical procedure during purification of paclitaxel from plant cell culture extracts. No additional costs for cell culture or extraction by silica-gel low-pressure chromatography were incurred. Precipitation from dichloromethane/n-hexane followed by HPLC on ODS and silica-gel resins resulted in paclitaxel of 99.5% purity with 80% overall yield. ODS low-pressure chromatography and THF/n-hexane precipitation yielded 13-dehydroxybaccatin III at >99% purity with 87.1% overall yield, and ODS low-pressure chromatography alone yielded 10-deacetylpaclitaxel at >90% purity with 93.4% overall yield. These compounds are of sufficient purity for use in semi-synthesis of paclitaxel. Both compounds were obtained in high yield at >99.5% purity using ODS-HPLC. The procedures described allow the simultaneous purification of 13-dehydroxybaccatin III, 10-deacetylpaclitaxel, and paclitaxel with only minimal additional expense for reagents or equipment.
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Affiliation(s)
- Sang-Hyun Pyo
- Samyang Genex Food & Bio Research Center, 63-2 Hwaam-Dong, Yuseong-Gu, Daejeon 305-717, South Korea
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Senger RS, Phisalaphong M, Karim MN, Linden JC. Development of a Culture Sub-population Induction Model: Signaling Pathways Synergy and Taxanes Production by Taxuscanadensis. Biotechnol Prog 2006. [DOI: 10.1002/bp0602552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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15
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Rohr UD, Oberhoff C, Markmann S, Gerber B, Scheulen M, Schindler AE. WITHDRAWN: The safety of synthetic paclitaxel by intralesional delivery with OncoGeltrade mark into skin breast cancer metastases: method and results of a clinical pilot trial. Arch Gynecol Obstet 2005. [PMID: 16315026 DOI: 10.1007/s00404-005-0095-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2005] [Accepted: 09/22/2005] [Indexed: 10/25/2022]
Abstract
Ahead of Print article withdrawn by publisher
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Affiliation(s)
- U D Rohr
- Department of Gynecology and Obstetrics, University of Essen, Hufelandstr. 55, 45147, Essen, Germany,
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Zhong JJ. Plant cell culture for production of paclitaxel and other taxanes. J Biosci Bioeng 2005; 94:591-9. [PMID: 16233355 DOI: 10.1016/s1389-1723(02)80200-6] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2002] [Accepted: 09/17/2002] [Indexed: 11/29/2022]
Abstract
Great advances in cell cultures of Taxus spp. for production of Taxol (generic name: paclitaxel) and other taxanes (taxoids) have been achieved in the past decade. This article reviews the manipulation of inducing factors--elicitors, gas composition, osmotic pressure, and conditioned medium; bioprocessing strategies--combining of inducing techniques, two-phase and two-stage cultivation, semi-continuous and perfusion cultures, and feeding of precursors or sugars; and bioreactors and scale-up. Perspectives on a more rational and efficient process involving metabolic engineering are also discussed.
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Affiliation(s)
- Jian-Jiang Zhong
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China.
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Zhong JJ, Yue CJ. Plant cells: secondary metabolite heterogeneity and its manipulation. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2005; 100:53-88. [PMID: 16270656 DOI: 10.1007/b136412] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
This chapter proposes the concept of rational manipulation of secondary metabolite heterogeneity in plant cell cultures. The heterogeneity of plant secondary metabolites is a very interesting and important issue because these structure-similar natural products have different biological activities. Both taxoids and ginsenosides are two kinds of preeminent examples in the enormous reservoir of pharmacologically valuable heterogeneous molecules in the plant kingdom. They are derived from the five-carbon precursor isopentenyl diphosphate, produced via the mevalonate or the non-mevalonate pathway. The diterpenoid backbone of taxoids is synthesized by taxadiene synthase and the triterpenoid backbone of ginsenosides is synthesized by dammarenediol synthase or beta-amyrin synthase. After various chemical decorations (oxidation, substitution, acylation, glycosylation, benzoylation, and so on) mediated by P450-dependent monooxygenases, glycosyltransferases, acyltransferases, benzoyltransferases, and other enzymes, the terpenoid backbones are converted into heterogeneous taxoids and ginsenosides with different bioactivities. Although detailed information about accumulation and regulation of individual taxoids or ginsenosides in plant cells is still lacking, remarkable progress has recently been made in the structure and bioactivity identification, biosynthetic pathway, manipulation of their heterogeneity by various methodologies including environmental factors, biotransformation, and metabolic engineering in cell/tissue cultures or in plants. Perspectives on a more rational and efficient process to manipulate production of desired plant secondary metabolites by means of metabolic engineering and "omics"-based approaches (e.g., functional genomics) are also discussed.
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Affiliation(s)
- Jian-Jiang Zhong
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 200237 Shanghai, PR China.
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Pyo SH, Song BK, Ju CH, Han BH, Choi HJ. Effects of absorbent treatment on the purification of paclitaxel from cell cultures of Taxus chinensis and yew tree. Process Biochem 2005. [DOI: 10.1016/j.procbio.2004.03.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Choi HK, Son JS, Na GH, Hong SS, Park YS, Song JY. Mass Production of Paclitaxel by Plant Cell Culture. ACTA ACUST UNITED AC 2002. [DOI: 10.5010/jpb.2002.29.1.059] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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