Synthesis and reactivity studies of model complexes for molybdopterin-dependent enzymes

Anion Binding and Oxidative Modification at the Molybdenum Cofactor of Formate Dehydrogenase from Rhodobacter capsulatus Studied by X-ray Absorption Spectroscopy

Formate dehydrogenase (FDH) enzymes are versatile catalysts for CO₂ conversion. The FDH from Rhodobacter capsulatus contains a molybdenum cofactor with the dithiolene functions of two pyranopterin guanine dinucleotide molecules, a conserved cysteine, and a sulfido group bound at Mo(VI). In this study, we focused on metal oxidation state and coordination changes in response to exposure to O₂, inhibitory anions, and redox agents using X-ray absorption spectroscopy (XAS) at the Mo K-edge. Differences in the oxidative modification of the bis-molybdopterin guanine dinucleotide (bis-MGD) cofactor relative to samples prepared aerobically without inhibitor, such as variations in the relative numbers of sulfido (Mo═S) and oxo (Mo═O) bonds, were observed in the presence of azide (N₃^-) or cyanate (OCN^-). Azide provided best protection against O₂, resulting in a quantitatively sulfurated cofactor with a displaced cysteine ligand and optimized formate oxidation activity. Replacement of the cysteine ligand by a formate (HCO₂^-) ligand at the molybdenum in active enzyme is compatible with our XAS data. Cyanide (CN^-) inactivated the enzyme by replacing the sulfido ligand at Mo(VI) with an oxo ligand. Evidence that the sulfido group may become protonated upon molybdenum reduction was obtained. Our results emphasize the role of coordination flexibility at the molybdenum center during inhibitory and catalytic processes of FDH enzymes.

Comparison of molybdenum and rhenium oxo bis-pyrazine-dithiolene complexes - in search of an alternative metal centre for molybdenum cofactor models

A pair of structurally precise analogues of molybdenum and rhenium complexes, [Et4N]/K2[MoO(prdt)2] and K[ReO(prdt)2] (prdt = pyrazine-2,3-dithiolene), were synthesized. These complexes serve as structural models for the active sites of bacterial molybdenum cofactor containing enzymes. They were comprehensively characterized and investigated by NMR, computationally supported IR and resonance Raman spectroscopy, cyclic voltammetry, mass spectrometry, elemental analysis and single-crystal X-ray diffraction. All compiled data are discussed in the context of comparing chemical and electronic structures and consequences thereof. This study constitutes the first investigation of a potential alternative Moco model system bearing rhenium as the central metal in an identical coordination environment to its molybdenum analogue. Structural evaluation revealed a slightly stronger M[double bond, length as m-dash]O bond in the rhenium complex in accordance with spectroscopic results, i.e. observed bond strengths. Thermodynamic parameters for the redox processes MoIV ↔ MoV and ReIV ↔ ReV were obtained by temperature dependent cyclic voltammetry. In contrast to molybdenum, rhenium loses entropy upon reduction and its redox potential is more temperature sensitive, indicating more significant differences than the respective diagonal relationship between the two metals in the periodic table might suggest and questioning rhenium's suitability as a functional artificial active site metal.

Structural and functional models in molybdenum and tungsten bioinorganic chemistry: description of selected model complexes, present scenario and possible future scopes

A brief description about some selected model complexes in molybdenum and tungsten bioinorganic chemistry is provided. The synthetic strategies involved and their limitations are discussed. Current status of molybdenum and tungsten bioinorganic modeling chemistry is presented briefly and synthetic problems associated therein are analyzed. Possible future directions which may expand the scope of modeling chemistry are suggested.

Sulfido and cysteine ligation changes at the molybdenum cofactor during substrate conversion by formate dehydrogenase (FDH) from Rhodobacter capsulatus

Formate dehydrogenase (FDH) enzymes are attractive catalysts for potential carbon dioxide conversion applications. The FDH from Rhodobacter capsulatus (RcFDH) binds a bis-molybdopterin-guanine-dinucleotide (bis-MGD) cofactor, facilitating reversible formate (HCOO(-)) to CO2 oxidation. We characterized the molecular structure of the active site of wildtype RcFDH and protein variants using X-ray absorption spectroscopy (XAS) at the Mo K-edge. This approach has revealed concomitant binding of a sulfido ligand (Mo=S) and a conserved cysteine residue (S(Cys386)) to Mo(VI) in the active oxidized molybdenum cofactor (Moco), retention of such a coordination motif at Mo(V) in a chemically reduced enzyme, and replacement of only the S(Cys386) ligand by an oxygen of formate upon Mo(IV) formation. The lack of a Mo=S bond in RcFDH expressed in the absence of FdsC implies specific metal sulfuration by this bis-MGD binding chaperone. This process still functioned in the Cys386Ser variant, showing no Mo-S(Cys386) ligand, but retaining a Mo=S bond. The C386S variant and the protein expressed without FdsC were inactive in formate oxidation, supporting that both Mo-ligands are essential for catalysis. Low-pH inhibition of RcFDH was attributed to protonation at the conserved His387, supported by the enhanced activity of the His387Met variant at low pH, whereas inactive cofactor species showed sulfido-to-oxo group exchange at the Mo ion. Our results support that the sulfido and S(Cys386) ligands at Mo and a hydrogen-bonded network including His387 are crucial for positioning, deprotonation, and oxidation of formate during the reaction cycle of RcFDH.

Molybdenum oxo and imido complexes of beta-diketiminate ligands: synthesis and structural aspects

Treatment of [MoO2(eta2-Pz)2] (Pz = 3,5-di-tert-butylpyrazolate) with the diketiminate ligand NacNacH (NacNac = CH[C(Me)NAr]2-, Ar = 2,6-Me2C6H3) at 55 degrees C leads under reduction of the metal to the formation of the dimeric molybdenum(V) compound [{MoO2(NacNac)}2] (1). The compound was characterized by spectroscopic means and by X-ray crystal structure analysis. The dimer consists of a [Mo2O4]2+ core with a short Mo-Mo bond (2.5591(5) A) and one coordinated diketiminate ligand on each metal atom. The reaction of [MoO2(eta2-Pz)2] with NacNacH in benzene at room temperature leads to a mixture of 1 and the monomeric molybdenum(VI) compound [MoO2(NacNac)(eta2-Pz)] (2). From such solutions, yellow crystals of 2 suitable for X-ray structural analysis were obtained revealing the coordination of one bidentate NacNac and one eta2-coordinate Pz ligand. This renders the two oxo groups inequivalent. Further high oxidation state molybdenum compounds containing the NacNac ligand were obtained by the reaction of [Mo(NAr)2Cl2(dme)] (Ar = 2,6-Me2C6H3) and [Mo(N-t-Bu)2Cl2(dme)] (dme = dimethoxyethane) with 1 equiv of the potassium salt NacNacK forming [Mo(NAr)2Cl(NacNac)] (3) and [Mo(N-t-Bu)2Cl(NacNac)] (4), respectively, in good yields. The X-ray structure analysis of 3 revealed a penta-coordinate compound where the geometry is best described as trigonal-bipyramidal.

Effects of sulphite supplementation on vascular responsiveness in sulphite oxidase-deficient rats

1. The aim of the present study was to explore the effect of dietary sulphite supplementation on vascular responsiveness in sulphite oxidase (SO)-deficient rats. 2. Male albino rats were divided into four groups, namely control (n = 8), sulphite-treated (n = 8), SO-deficient (n = 8) and sulphite-treated SO-deficient (n = 8) groups. Sulphite oxidase deficiency was induced by administration of a low-molybdenum diet with concurrent addition of 200 p.p.m. tungsten in the form of sodium tungstate in the drinking water for 9 weeks. Sulphite, in the form of sodium metabisulphite (Na(2)O(5)S(2); 25 mg/kg) was given in the drinking water to sulphite-treated and sulphite-treated SO-deficient groups for the last 6 weeks. The vascular responsiveness of isolated aortic rings to acetylcholine (ACh), sodium nitroprusside (SNP) and histamine was investigated in organ baths. 3. The responsiveness of aortic rings to SNP and histamine did not differ significantly between groups. Conversely, there was a significant decrease in ACh-induced relaxation in aortic rings from the sulphite-treated SO-deficient group compared with the control group (pD(2) 6.2 +/- 0.3 and 7.5 +/- 0.1, respectively; P < 0.05). Incubation of aortic rings in the presence of either l-arginine or superoxide dismutase significantly improved the ACh-induced vasorelaxation in sulphite-treated SO-deficient group (pD(2) 7.2 +/- 0.3 and 7.4 +/- 0.3, respectively). 4. The findings of the present study suggest that the increased production of reactive oxygen species and the resultant increment in l-arginine/nitric oxideconsumption may play a role in the reduced endothelium-dependent vasorelaxation in sulphite-treated SO-deficient rats.

Structure of the Michaelis Complex and Function of the Catalytic Center in the Reductive Half-Reaction of Computational and Synthetic Models of Sulfite Oxidase

By using frontier-molecular-orbital and electrostatic (nucleophilic) interactions as well as relaxed potential-energy surface scans, it is shown that the initial step in the oxygen-atom transfer (OAT) reaction of [Mo(VI)O2-(S2C2Me2)SMe](-1) (1) and [Mo(VI)O2-{(S2C2(CN)2}2]2- (2) with HSO3(-) takes place by oxoanionic binding of the substrate to the Mo(VI) center with the formation of a stable Michaelis complex. The gas-phase and solvent-corrected enthalpy profile with fully optimized minima and transition states for the OAT reaction of 1 and 2 with HSO3(-) showed the release of reaction energy for both complexes. The optimized geometries of 1 and 2 in the respective enzyme-substrate complexes showed a common feature with the participation of hydrogen bonding of the substrate with the axial (spectator) oxo group in the subsequent formation of the six-membered MoO2HOS transition state. The enzyme-substrate complex of 2 shows heptacoordination as proposed earlier, although the trans (to axial oxo)-Mo-S(dithiolene) bond is elongated to 2.948 A.

Molecular oxygen activation by a molybdenum(iv) monooxo bis(β-ketiminato) complex

Molybdenum(IV) monooxo compound that contains bis(beta-ketiminato) ligands activates molecular oxygen forming a molybdenum(VI) monooxo peroxo compound, representing a new entry into molybdenum peroxo derivatives.

Mechanism of Nitrate Reduction byDesulfovibrio desulfuricans Nitrate Reductase—A Theoretical Investigation

The oxidative half-reaction of oxygen atom transfer from nitrate to an Mo(IV) complex has been investigated at various levels of theory. Two models have been used to simulate the enzyme active site. In the second, more advanced model, additional amino acid residues capable of significantly affecting the catalytic efficiency of the enzyme were included. B3LYP/6-31+G*, ONIOM, and orbital-free embedding approaches have been used to construct the potential energy profile and to qualitatively compare the results of a QM/MM study with those obtained by a full quantum mechanical strategy. The study has confirmed the utility of the orbital-free embedding method in the description of enzymatic processes.

Temperature dependent electrochemical investigations of molybdenum and tungsten oxobisdithiolene complexes

To achieve a better understanding why thermophilic and hyperthermophilic organisms use tungsten instead of molybdenum within the active sites of their molybdopterin dependent oxidases, electrochemical investigations of model complexes for the active sites of enzymes belonging to the DMSO reductase (molybdenum) and the aldehyde oxidoreductase (tungsten) family have been undertaken. Cyclic voltammetry and differential pulse voltammetry of four pairs of molybdenum and tungsten oxobisdithiolene compounds show huge differences in the response of their redox potentials to rising or decreasing temperatures, depending on the substituents at the dithiolene group. The mnt2- compounds (1a, 1b) respond with decreasing redox potentials E(1/2) to rising temperatures whereas all other compounds show positive gradients deltaE/deltaT. In every case the values for the gradients for the tungsten compounds are greater than those for the molybdenum compounds. Six of the investigated compounds are known in the literature and two compounds were newly synthesized. These two new compounds include the pyrane subunit of the native molybdopterin ligand and should therefore be even better models for the active site of the molybdopterin containing enzymes. The molybdenum/tungsten pair with these new ligands shows a remarkably small difference for the redox potentials of the transition M(IV) <--> M(V) of only 30 mV at 25 degrees C and the reversion of the usual order with higher potentials for the molybdenum than the tungsten compound at a temperature of 70 degrees C; a temperature that is in the range where usually tungsten containing enzymes instead of molybdenum containing ones are found.

Synthesis and characterization of molybdenum oxo complexes of two tripodal ligands: reactivity studies of a functional model for molybdenum oxotransferases

Reaction of the tetradentate ligand N-(2-hydroxybenzyl)-N,N-bis(2-pyridylmethyl)amine (L-OH) with MoO2Cl2 in methanol in the presence of NaOMe and PF6- results in the formation of [MoO2(L-O)]PF6. Similarly, the reaction of N-(2-mercaptobenzyl)-N,N-bis(2-pyridylmethyl)amine (L-SH) with MoO2(acac)2 leads to the formation of [MoO2(L-S)]+. The dioxo-molybdenum complex [MoO2(L-O)]+ reacts with phosphines in methanol to afford phosphine oxides and an air-sensitive molybdenum complex, tentatively identified as [Mo(IV)O(L-O)(OCH3)]. The latter complex is capable of reducing biological oxygen donors such as DMSO or nitrate, thereby mimicking the activity of DMSO reductase and nitrate reductase. Reaction of [MoO2(L-O)]PF6 with PPh3 in other solvents than methanol leads to the formation of the Mo(V) dimer [(L-O)OMo(micro-O)MoO(L-O)](PF6)2. The crystal structures of [MoO2(L-O)]PF6 and the micro-oxo bridged dimer are presented.

Symphoria: the success of modeling the active site function of oxo-molybdoenzymes

The success of modeling the active site function of oxomolybdoenzymes have been claimed generally on the basis of reactivity of the synthetic analogues towards PPh(3) or DMSO (dimethyl sulfoxide). Here it has been shown that the success of modeling the active site function of these enzymes may not be determined by the ability of a model to undergo oxotransfer with PPh(3) or DMSO (except for the modeling of DMSO reductase) and one should adhere to the criteria accepted by the bioinorganic community. A critical evaluation of two of those criteria which requires a synthetic analogue (a) should react with the enzyme substrate (b) should follow the same rate law as does the enzyme, has been presented in this paper. We have shown that the fulfillment of criterion (b) and the inhibition phenomena to that effect both are dictated by symphoria (from sympherin in Greek: the bringing together of reactants into the proper spatial relationship) on the basis of kinetic studies of the reactivity of enzyme substrate the HSO(3)(-) and its analogues (anions of oxyacids of phosphorous) towards a functional model sulfite oxidase [Bu(4)N](2)[Mo(VI)O(2)(mnt)(2)] (mnt(2-)=1,2-dicyanoethylenedithiolate) but with the caveat that the mechanistic inference drawn from such studies may not be the same as in the case of native enzyme. In view of this ambiguity it has been pointed out that the fulfillment of this criterion is not a definitive conclusion towards our understanding of the structure-function relationship of an enzyme and, therefore, the criterion of a 'structural analogue' and 'functional analogue' have been revised subject to an amendment of criterion (a) to include substrate analogues. It has also been shown for the first time on the basis of kinetic studies that the effect of medium can lead to substrate - inhibitor type dualism and hence the effect of medium is also a factor that can play a key role for the success of modeling the active site function of an enzyme. Here we also provide the details of the inhibition mechanisms proposed in our earlier report with an indirect proof to that effect.

Direct electrochemistry of a bacterial sulfite dehydrogenase

Sulfite dehydrogenase from Starkeya novella is an alphabeta heterodimer comprising a 40.6 kDa subunit (containing the Mo cofactor) and a smaller 8.8 kDa heme c subunit. The enzyme catalyses the oxidation of sulfite to sulfate with the natural electron acceptor being cytochrome c550. Its catalytic mechanism is thought to resemble that found in eukaryotic sulfite oxidases. Using protein film voltammetry and redox potentiometry, we have identified both Mo- and heme-centered redox responses from the enzyme immobilized on a pyrolytic graphite working electrode: E m,8 (Fe III/II) +177 mV; E m,8 (Mo VI/V) +211 mV and E m,8 (Mo V/IV) -118 mV vs NHE; Upon addition of sulfite to the electrochemical cell a steady-state voltammogram is observed and an apparent Michaelis constant (Km) of 26(1) microM was determined for the enzyme immobilized on the working electrode surface, which is comparable with the value obtained from solution assays.

Methyloxorhenium(V) complexes with two bidentate ligands: syntheses and reactivity studies

Four new methyloxorhenium(V) complexes were synthesized: MeReO(PA)(2) (1), MeReO(HQ)(2) (2), MeReO(MQ)(2) (3), and MeReO(diphenylphosphinobenzoate)(2) (4) (in which PAH = 2-picolinic acid, HQH = 8-hydroxyquinoline, and MQH = 8-mercaptoquinoline). Although only one geometric structure has been identified crystallographically for 1, 2, and 3, two isomers of 3 and 4 in solution were detected by NMR spectroscopy. These compounds catalyze the sulfoxidation of thioethers by pyridine N-oxides and sulfoxides. The rate law for the reaction between pyridine N-oxides and thioethers, catalyzed by 1, shows a first-order dependence on the concentrations of pyridine N-oxide and 1. The second-order rate constants of a series of para-substituted pyridine N-oxides fall in the range of 0.27-7.5 L mol(-)(1) s(-)(1). Correlation of these rate constants by the Hammett LFER method gave a large negative reaction constant, rho = -5.2. The next and rapid step does not influence the kinetics, but it could be explored with competition experiments carried out with a pair of methyl aryl sulfides, MeSC(6)H(4)-p-Y. The value of each rate was expressed relative to the reference compound that has Y = H. A Hammett analysis of k(Y)/k(H) gave rho = -1.9. Oxygen-18 labeled 1 was used in a single turnover experiment for 4-picoline N-oxide and dimethyl sulfide. No (18)O-labeled DMSO was found. We suggest that the reaction proceeds by way of two intermediates that were not observed during the reaction. The first intermediate contains an opened PA-chelate ring; this allows the pyridine N-oxide to access the primary coordination sphere of rhenium. The second intermediate is a cis-dioxorhenium(VII) species, which the thioether then attacks. Oxygen-18 experiments were used to show that the two oxygens of this intermediate are not equivalent; only the new oxygen is attacked by, and transferred to, SR(2). Water inhibits the reaction because it hydrolyzes the rhenium(VII) intermediate.

A density functional study of oxygen atom transfer reactions between biological oxygen atom donors and molybdenum(IV) bis(dithiolene) complexes

Density functional calculations have been used to investigate oxygen atom transfer reactions from the biological oxygen atom donors trimethylamine N-oxide (Me(3)NO) and dimethyl sulfoxide (DMSO) to the molybdenum(IV) complexes [MoO(mnt)(2)](2-) and [Mo(OCH(3))(mnt)(2)](-) (mnt = maleonitrile-1,2-dithiolate), which may serve as models for mononuclear molybdenum enzymes of the DMSO reductase family. The reaction between [MoO(mnt)(2)](2-) and trimethylamine N-oxide was found to have an activation energy of 72 kJ/mol and proceed via a transition state (TS) with distorted octahedral geometry, where the Me(3)NO is bound through the oxygen to the molybdenum atom and the N-O bond is considerably weakened. The computational modeling of the reactions between dimethyl sulfoxide (DMSO) and [MoO(mnt)(2)](2-) or [Mo(OCH(3))(mnt)(2)](-) indicated that the former is energetically unfavorable while the latter was found to be favorable. The addition of a methyl group to [MoO(mnt)(2)](2-) to form the corresponding des-oxo complex not only lowers the relative energy of the products but also lowers the activation energy. In addition, the reaction with [Mo(OCH(3))(mnt)(2)](-) proceeds via a TS with trigonal prismatic geometry instead of the distorted octahedral TS geometry modeled for the reaction between [MoO(mnt)(2)](2-) and Me(3)NO.

[PdS2C2(COOMe)2](6n) (n = 0, -1, -2, -3, -4): hexanuclear homoleptic palladium dithiolene complexes

Reaction of a stoichiometric equivalent of the zinc-dithiolene complex, (tmeda)ZnS2C2(COOMe)2 (tmeda = tetramethylethylenediamine), with (MeCN)2PdCl2 results in a 1:1 homoleptic dithiolene that forms the hexanuclear cluster [PdS2C2(COOMe)2]6 (1). X-ray structure analysis of 1 indicates a Pd6S12 core comprised of six face-centered palladium atoms and 12 edge-centered sulfur atoms situated on an imaginary approximate cube. Complex 1 undergoes four distinct and reversible one-electron redox steps in dichloromethane at -186, -484, -1174, and -1524 mV versus a standard calomel electrode (ferrocenium+/ferrocene redox couple 409 mV). The two-electron reduction product of 1, [Bu4N]2[(PdS2C2(COOMe)2)6] (2), has been chemically isolated and characterized.

Synthesis and cleavage reactions of metal-metal-bonded [Mo(2)(S(2)CNR(2))(6)](OTf)(2), a source of the Tris(dithiocarbamato)molybdenum(IV) fragment

Halide abstraction from the chlorotris(dialkyldithiocarbamato)molybdenum(IV) complexes MoCl(S(2)CNR(2))(3) (R = Et, Me) with silver triflate produces the diamagnetic dimeric complexes [Mo(2)(S(2)CNR(2))(6)](OTf)(2) in good yield. The crystallographically determined structure of the diethyldithiocarbamato complex indicates that the dimer consists of two pentagonal bipyramids sharing an axial edge, with a Mo-Mo separation (2.8462(8) A) indicative of a metal-metal bond. A qualitative analysis of the bonding indicates that this bond is of order 2 and consists of one normal sigma bond and one relatively weak "skewed pi" interaction. The dimers [Mo(2)(S(2)CNR(2))(6)](OTf)(2) react with a variety of reagents to give monomeric seven-coordinate complexes, including the new cationic molybdenum(IV) complex [Mo(PMe(2)Ph)(S(2)CNEt(2))(3)](OTf), which has been structurally characterized. Kinetic studies of the reaction of [Mo(2)(S(2)CNEt(2))(6)](OTf)(2) with halides indicate the presence of competing dissociative and associative substitution pathways, although neutral donors may react by different mechanisms.