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For: Johansen S, Einvik C, Nielsen H. DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role. Biochimie 2002;84:905-12. [PMID: 12458083 DOI: 10.1016/s0300-9084(02)01443-8] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Analysis of small and large subunit rDNA introns from several ectomycorrhizal fungi species. PLoS One 2021;16:e0245714. [PMID: 33720962 PMCID: PMC7959364 DOI: 10.1371/journal.pone.0245714] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Accepted: 01/06/2021] [Indexed: 11/19/2022]  Open
2
Hafez M, Hausner G. Convergent evolution of twintron-like configurations: One is never enough. RNA Biol 2016;12:1275-88. [PMID: 26513606 DOI: 10.1080/15476286.2015.1103427] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
3
Speciation of a group I intron into a lariat capping ribozyme. Proc Natl Acad Sci U S A 2014;111:7659-64. [PMID: 24821772 DOI: 10.1073/pnas.1322248111] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
4
Laing C, Wen D, Wang JTL, Schlick T. Predicting coaxial helical stacking in RNA junctions. Nucleic Acids Res 2011;40:487-98. [PMID: 21917853 PMCID: PMC3258123 DOI: 10.1093/nar/gkr629] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
5
Birgisdottir ÁB, Nielsen H, Beckert B, Masquida B, Johansen SD. Intermolecular interaction between a branching ribozyme and associated homing endonuclease mRNA. Biol Chem 2011;392:491-9. [PMID: 21495911 DOI: 10.1515/bc.2011.055] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
6
Edgell DR, Chalamcharla VR, Belfort M. Learning to live together: mutualism between self-splicing introns and their hosts. BMC Biol 2011;9:22. [PMID: 21481283 PMCID: PMC3073962 DOI: 10.1186/1741-7007-9-22] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2011] [Accepted: 04/11/2011] [Indexed: 12/22/2022]  Open
7
The Naegleria genome: a free-living microbial eukaryote lends unique insights into core eukaryotic cell biology. Res Microbiol 2011;162:607-18. [PMID: 21392573 DOI: 10.1016/j.resmic.2011.03.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2010] [Accepted: 01/29/2011] [Indexed: 11/24/2022]
8
Fiskaa T, Birgisdottir AB. RNA reprogramming and repair based on trans-splicing group I ribozymes. N Biotechnol 2010;27:194-203. [PMID: 20219714 DOI: 10.1016/j.nbt.2010.02.013] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
9
Talini G, Gallori E, Maurel MC. Natural and unnatural ribozymes: back to the primordial RNA world. Res Microbiol 2009;160:457-65. [PMID: 19539027 DOI: 10.1016/j.resmic.2009.05.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2009] [Revised: 05/27/2009] [Accepted: 05/29/2009] [Indexed: 10/20/2022]
10
Nielsen H, Einvik C, Lentz TE, Hedegaard MM, Johansen SD. A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA. RNA (NEW YORK, N.Y.) 2009;15:958-967. [PMID: 19329537 PMCID: PMC2673072 DOI: 10.1261/rna.669209] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2008] [Accepted: 01/23/2009] [Indexed: 05/27/2023]
11
Beckert B, Nielsen H, Einvik C, Johansen SD, Westhof E, Masquida B. Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes. EMBO J 2008;27:667-78. [PMID: 18219270 PMCID: PMC2219692 DOI: 10.1038/emboj.2008.4] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2007] [Accepted: 01/04/2008] [Indexed: 11/10/2022]  Open
12
Johansen SD, Haugen P, Nielsen H. Expression of protein-coding genes embedded in ribosomal DNA. Biol Chem 2007;388:679-86. [PMID: 17570819 DOI: 10.1515/bc.2007.089] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
13
Wikmark OG, Einvik C, De Jonckheere JF, Johansen SD. Short-term sequence evolution and vertical inheritance of the Naegleria twin-ribozyme group I intron. BMC Evol Biol 2006;6:39. [PMID: 16670006 PMCID: PMC1464144 DOI: 10.1186/1471-2148-6-39] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2005] [Accepted: 05/02/2006] [Indexed: 11/10/2022]  Open
14
Nielsen H, Westhof E, Johansen S. An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme. Science 2005;309:1584-7. [PMID: 16141078 DOI: 10.1126/science.1113645] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
15
Birgisdottir AB, Johansen SD. Reverse splicing of a mobile twin-ribozyme group I intron into the natural small subunit rRNA insertion site. Biochem Soc Trans 2005;33:482-4. [PMID: 15916547 DOI: 10.1042/bst0330482] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
16
Haugen P, Wikmark OG, Vader A, Coucheron DH, Sjøttem E, Johansen SD. The recent transfer of a homing endonuclease gene. Nucleic Acids Res 2005;33:2734-41. [PMID: 15891115 PMCID: PMC1110740 DOI: 10.1093/nar/gki564] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
17
Birgisdottir ÅB, Johansen S. Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA. Nucleic Acids Res 2005;33:2042-51. [PMID: 15817568 PMCID: PMC1074745 DOI: 10.1093/nar/gki341] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
18
Haugen P, Coucheron DH, Rønning SB, Haugli K, Johansen S. The molecular evolution and structural organization of self-splicing group I introns at position 516 in nuclear SSU rDNA of myxomycetes. J Eukaryot Microbiol 2004;50:283-92. [PMID: 15132172 DOI: 10.1111/j.1550-7408.2003.tb00135.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
19
Haugen P, Andreassen M, Birgisdottir AB, Johansen S. Hydrolytic cleavage by a group I intron ribozyme is dependent on RNA structures not important for splicing. ACTA ACUST UNITED AC 2004;271:1015-24. [PMID: 15009213 DOI: 10.1111/j.1432-1033.2004.04003.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Nielsen H, Fiskaa T, Birgisdottir AB, Haugen P, Einvik C, Johansen S. The ability to form full-length intron RNA circles is a general property of nuclear group I introns. RNA (NEW YORK, N.Y.) 2003;9:1464-1475. [PMID: 14624003 PMCID: PMC1370501 DOI: 10.1261/rna.5290903] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2003] [Accepted: 08/28/2003] [Indexed: 05/24/2023]
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