Effects of hypoxia and toxicant exposure on phosphoarginine, intracellular pH, and free Mg2+ in abalone as measured by 31P-NMR

In-cell NMR: Why and how?

NMR spectroscopy has been applied to cells and tissues analysis since its beginnings, as early as 1950. We have attempted to gather here in a didactic fashion the broad diversity of data and ideas that emerged from NMR investigations on living cells. Covering a large proportion of the periodic table, NMR spectroscopy permits scrutiny of a great variety of atomic nuclei in all living organisms non-invasively. It has thus provided quantitative information on cellular atoms and their chemical environment, dynamics, or interactions. We will show that NMR studies have generated valuable knowledge on a vast array of cellular molecules and events, from water, salts, metabolites, cell walls, proteins, nucleic acids, drugs and drug targets, to pH, redox equilibria and chemical reactions. The characterization of such a multitude of objects at the atomic scale has thus shaped our mental representation of cellular life at multiple levels, together with major techniques like mass-spectrometry or microscopies. NMR studies on cells has accompanied the developments of MRI and metabolomics, and various subfields have flourished, coined with appealing names: fluxomics, foodomics, MRI and MRS (i.e. imaging and localized spectroscopy of living tissues, respectively), whole-cell NMR, on-cell ligand-based NMR, systems NMR, cellular structural biology, in-cell NMR… All these have not grown separately, but rather by reinforcing each other like a braided trunk. Hence, we try here to provide an analytical account of a large ensemble of intricately linked approaches, whose integration has been and will be key to their success. We present extensive overviews, firstly on the various types of information provided by NMR in a cellular environment (the "why", oriented towards a broad readership), and secondly on the employed NMR techniques and setups (the "how", where we discuss the past, current and future methods). Each subsection is constructed as a historical anthology, showing how the intrinsic properties of NMR spectroscopy and its developments structured the accessible knowledge on cellular phenomena. Using this systematic approach, we sought i) to make this review accessible to the broadest audience and ii) to highlight some early techniques that may find renewed interest. Finally, we present a brief discussion on what may be potential and desirable developments in the context of integrative studies in biology.

Application of NMR-based techniques in aquatic toxicology: brief examples

Nuclear magnetic resonance spectroscopy (NMR) has been employed over many years for the elucidation of chemical structures. However, in more recent years it has been used to characterize sublethal actions of pollutants in aquatic organisms. For instance, in vivo NMR involves live, intact organisms or cell cultures and the application of chemical stressors to reveal toxic mechanisms in real time. Alternatively, NMR-based metabolomics involves rapid cessation of metabolic activity following chemical exposure (via liquid N(2)) to provide an assessment of metabolic actions via more traditional NMR analysis. Two examples are briefly presented to exemplify the power of NMR for assessing toxic actions in marine and freshwater organisms.

Applications of metabolomics in agriculture

Biological systems are exceedingly complex. The unraveling of the genome in plants and humans revealed fewer than the anticipated number of genes. Therefore, other processes such as the regulation of gene expression, the action of gene products, and the metabolic networks resulting from catalytic proteins must make fundamental contributions to the remarkable diversity inherent in living systems. Metabolomics is a relatively new approach aimed at improved understanding of these metabolic networks and the subsequent biochemical composition of plants and other biological organisms. Analytical tools within metabolomics including mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy can profile the impact of time, stress, nutritional status, and environmental perturbation on hundreds of metabolites simultaneously resulting in massive, complex data sets. This information, in combination with transcriptomics and proteomics, has the potential to generate a more complete picture of the composition of food and feed products, to optimize crop trait development, and to enhance diet and health. Selected presentations from an American Chemical Society symposium held in March 2005 have been assembled to highlight the emerging application of metabolomics in agriculture.

Sublethal effects of pentachlorophenol in abalone (Haliotis rufescens) veliger larvae as measured by (31)P-NMR

Toxicity tests with larval marine organisms are widely used as water quality-monitoring tools. Often employing a single morphological endpoint, they provide only limited insight into toxic action mechanisms. Since mechanistic observations can provide more sensitive endpoints of toxicity, the goal of this study was to modify existing in vivo (31)P-NMR techniques to evaluate the effects of pentachlorophenol (PCP) on high-energy phosphates in veliger larvae of the red abalone (Haliotis rufescens), a species and life stage commonly used in developmental toxicity tests. Fluxes of phosphoarginine (PA), nucleoside triphosphates (NTPs), sugar phosphates (SPs), and inorganic phosphate (P(i)), as well as in intracellular pH (pH(i)), were monitored via NMR using a flow-through exposure system. The exposure protocol included 1 h of clean seawater, 2 h of PCP (1.2 mg L(-1)) exposure, and 2 h of recovery in clean seawater. During PCP exposure, veligers displayed maximum declines in PA and NTP resonance intensities to 38+/-10% (P<0.01) and 61+/-16% (P<0.05) of reference values (represented by the average resonance intensities taken from 1 h of preexposure spectral acquisition). Inorganic phosphate concentrations rose to 302+/-63% (P<0.01), and pH(i) declined from a reference period average of 7.12+/-0.03 to 7.04+/-0.04 (P<0.05). On exposure to clean seawater, veligers recovered within 2 h, returning to 196+/-53, 89+/-12, and 89+/-13% of the reference intensities for P(i), PA, and NTPs, respectively (P>0.05 for all values), while pH(i) increased to 7.08+/-0.11. When compared with adult abalone, veliger larvae responded similarly to PCP, differing mainly in their rapid recovery (2 h for larvae versus 6 h adults) and more severe acidification (a 0.08 pH unit decline versus a 0.03 pH unit decline). This report describes an application of NMR for small (> or =200 micro) marine organisms using commonly available vertical-bore NMR magnets; it should prove adaptable for use with other similar larval forms.

Effects of hypoxia and toxicant exposure on adenylate energy charge and cytosolic ADP concentrations in abalone

Many studies have used adenylate energy charge (AEC) as an index of an organism's metabolic state under conditions of imposed stress, either through natural or xenobiotic stressors. AEC is a linear measure of the ratio of ATP concentration to total adenylate concentration, which ranges in value from 1 in the fully charged state to 0. Paradoxically, high values of AEC are often associated with high toxicant exposures, and low AEC values with low exposures. These discrepancies may be caused by the inability of AEC measurements to adequately evaluate cytosolic adenylate concentrations, which are the critical parameters in enzymatic regulation. Consequently, the goal of this study was to compare AEC values, as measured by high performance liquid chromatography (HPLC), to free adenosine diphosphate (ADPfree) concentrations, as measured using the arginine kinase equilibrium reaction and in vivo 31P-NMR, in red abalone (Haliotis rufescens) in response to either hypoxia or toxicant (pentachlorophenol, or sodium azide) exposure. AEC values remain essentially constant when compared with control animals during periods of stress exposure and recovery. In contrast, calculated ADPfree concentrations are approximately a third of those determined by HPLC and nearly double in response to stress exposure. The physiologic importance of this response is demonstrated by increases in ATP formation via arginine kinase. These results are discussed in light of the pertinent mammalian literature.