1
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Vogt E, Kjaergaard HG. Vibrational Spectroscopy of the Water Dimer at Jet-Cooled and Atmospheric Temperatures. Annu Rev Phys Chem 2022; 73:209-231. [PMID: 35044791 DOI: 10.1146/annurev-physchem-082720-104659] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The vibrational spectroscopy of the water dimer provides an understanding of basic hydrogen bonding in water clusters, and with about one water dimer for every 1,000 water molecules, it plays a critical role in atmospheric science. Here, we review how the experimental and theoretical progress of the past decades has improved our understanding of water dimer vibrational spectroscopy under both cold and warm conditions. We focus on the intramolecular OH-stretching transitions of the donor unit, because these are the ones mostly affected by dimer formation and because their assignment has proven a challenge. We review cold experimental results from early matrix isolation to recent mass-selected jet expansion techniques and, in parallel, the improvements in the theoretical anharmonic models. We discuss and illustrate changes in the vibrational spectra of complexes upon increasing temperature, and the difficulties in recording and calculating these spectra. In the atmosphere, water dimer spectra at ambient temperature are crucial. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 73 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen, Denmark;
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2
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Anharmonicity modeling in hydrogen bonded solvent dimers. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Dinu DF, Podewitz M, Grothe H, Loerting T, Liedl KR. On the synergy of matrix-isolation infrared spectroscopy and vibrational configuration interaction computations. Theor Chem Acc 2020; 139:174. [PMID: 33192169 PMCID: PMC7652801 DOI: 10.1007/s00214-020-02682-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Accepted: 10/05/2020] [Indexed: 11/08/2022]
Abstract
The key feature of matrix-isolation infrared (MI-IR) spectroscopy is the isolation of single guest molecules in a host system at cryogenic conditions. The matrix mostly hinders rotation of the guest molecule, providing access to pure vibrational features. Vibrational self-consistent field (VSCF) and configuration interaction computations (VCI) on ab initio multimode potential energy surfaces (PES) give rise to anharmonic vibrational spectra. In a single-sourced combination of these experimental and computational approaches, we have established an iterative spectroscopic characterization procedure. The present article reviews the scope of this procedure by highlighting the strengths and limitations based on the examples of water, carbon dioxide, methane, methanol, and fluoroethane. An assessment of setups for the construction of the multimode PES on the example of methanol demonstrates that CCSD(T)-F12 level of theory is preferable to compute (a) accurate vibrational frequencies and (b) equilibrium or vibrationally averaged structural parameters. Our procedure has allowed us to uniquely assign unknown or disputed bands and enabled us to clarify problematic spectral regions that are crowded with combination bands and overtones. Besides spectroscopic assignment, the excellent agreement between theory and experiment paves the way to tackle questions of rather fundamental nature as to whether or not matrix effects are systematic, and it shows the limits of conventional notations used by spectroscopists.
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Affiliation(s)
- Dennis F Dinu
- Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innsbruck, Austria.,Institute of Material Chemistry, TU Vienna, Vienna, Austria.,Institute of Physical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - Hinrich Grothe
- Institute of Material Chemistry, TU Vienna, Vienna, Austria
| | - Thomas Loerting
- Institute of Physical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - Klaus R Liedl
- Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innsbruck, Austria
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4
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Pitsevich GA, Malevich AE, Kisuryna DG, Vasilevsky AU, Vasilevich AS, Sapeshka UU, Kamnev AA. Quantum aspects of torsional vibrations in the HO 3H, DO 3H and DO 3D molecules. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 239:118209. [PMID: 32512338 DOI: 10.1016/j.saa.2020.118209] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 02/09/2020] [Accepted: 02/29/2020] [Indexed: 06/11/2023]
Abstract
The hydrogen trioxide (HT) molecule HOOOH is 1) a prototype for a class of molecules of the form X(ZY)2 with two equivalent internal tops (ZY) and 2) the second representative of the polyoxides series of the form HOnH (n ≥ 2). Due to this, it is the subject of close attention of researchers. In this paper, we performed a group theory analysis of the torsional and spin states of the HOOOH, DOOOH, and DOOOD molecules. The relationships have been established between the symmetry species of the C2V(M) molecular symmetry group to which the HOOOH and DOOOD molecules belong, and the symmetry species of the C2 and CS point groups to which the equilibrium configurations of trans- and cis-conformers of the above molecules belong, respectively. 2D PES and 2D surfaces of kinematic coefficients related to torsional vibrations of hydroxyl groups were calculated at the complete basis set (CBS) limit by extrapolating the results of calculations at the MP2/cc-pVTZ and MP2/cc-pVQZ levels of theory. For all the three molecules, the energies of the stationary torsional states were computed using the Fourier method for a numerical solution of the 2D vibrational Schrödinger equation. Symmetry species of torsional states and the values of quantum numbers defining the types of torsional vibrations were found by analyzing the torsional wave functions. The selection rules for transitions between torsional states in the dipole approximation were also formulated.
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Affiliation(s)
- G A Pitsevich
- Department of Physical Optics and Applied Informatics, Faculty of Physics, Belarusian State University, Nezavisimosti ave., 4, 220030, Minsk, Belarus
| | - A E Malevich
- Department of Physical Optics and Applied Informatics, Faculty of Physics, Belarusian State University, Nezavisimosti ave., 4, 220030, Minsk, Belarus
| | - D G Kisuryna
- Department of Physical Optics and Applied Informatics, Faculty of Physics, Belarusian State University, Nezavisimosti ave., 4, 220030, Minsk, Belarus
| | - A U Vasilevsky
- Department of Physical Optics and Applied Informatics, Faculty of Physics, Belarusian State University, Nezavisimosti ave., 4, 220030, Minsk, Belarus
| | - A S Vasilevich
- Department of Physical Optics and Applied Informatics, Faculty of Physics, Belarusian State University, Nezavisimosti ave., 4, 220030, Minsk, Belarus
| | - U U Sapeshka
- University of Illinois at Chicago, Chicago, Ill., USA
| | - A A Kamnev
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prosp. Entuziastov, 13, Saratov 410049, Russia.
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5
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Hansen AS, Vogt E, Kjaergaard HG. Gibbs energy of complex formation – combining infrared spectroscopy and vibrational theory. INT REV PHYS CHEM 2019. [DOI: 10.1080/0144235x.2019.1608689] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | - Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
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6
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McDonald DC, Wagner JP, McCoy AB, Duncan MA. Near-Infrared Spectroscopy and Anharmonic Theory of Protonated Water Clusters: Higher Elevations in the Hydrogen Bonding Landscape. J Phys Chem Lett 2018; 9:5664-5671. [PMID: 30205006 DOI: 10.1021/acs.jpclett.8b02499] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Near-infrared spectroscopy measurements are presented for protonated water clusters, H+(H2O) n, in the size range of n = 1-8. Clusters are produced in a pulsed-discharge supersonic expansion, mass selected, and studied with infrared laser photodissociation spectroscopy in the regions of 3600-4550 and 4850-7350 cm-1. Although there is some variation with cluster size, the main features of these spectra are a broad absorption near 5300 cm-1, a sharp doublet near 7200 cm-1, as well as a structured absorption near 4100 cm-1 for n ≥ 2. The vibrational patterns measured for the hydronium, Zundel, and Eigen ions are compared to those predicted by different forms of anharmonic theory. Second-order vibrational perturbation theory (VPT2) and a local mode treatment of the OH stretches both capture key aspects of the spectra but suffer understandable deficiencies in the quantitative description of band positions and intensities.
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Affiliation(s)
- D C McDonald
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - J P Wagner
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - A B McCoy
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - M A Duncan
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
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7
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Lockwood SP, Fuller TG, Newby JJ. Structure and Spectroscopy of Furan:H2O Complexes. J Phys Chem A 2018; 122:7160-7170. [DOI: 10.1021/acs.jpca.8b06308] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Schuyler P. Lockwood
- Department of Chemistry, Hobart and William Smith Colleges, Geneva, New York 14456, United States
| | - Tyler G. Fuller
- Department of Chemistry, Hobart and William Smith Colleges, Geneva, New York 14456, United States
| | - Josh J. Newby
- Department of Chemistry, Hobart and William Smith Colleges, Geneva, New York 14456, United States
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8
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Pitsevich G, Doroshenko I, Malevich А, Shalamberidze Е, Sapeshko V, Pogorelov V, Pettersson LGM. Temperature dependence of the intensity of the vibration-rotational absorption band ν 2 of H 2O trapped in an argon matrix. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 172:83-90. [PMID: 27107480 DOI: 10.1016/j.saa.2016.04.028] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2015] [Revised: 01/28/2016] [Accepted: 04/08/2016] [Indexed: 06/05/2023]
Abstract
Using two sets of effective rotational constants for the ground (000) and the excited bending (010) vibrational states the calculation of frequencies and intensities of vibration-rotational transitions for J″=0-2; and J'=0-3; was carried out in frame of the model of a rigid asymmetric top for temperatures from 0 to 40K. The calculation of the intensities of vibration-rotational absorption bands of H2O in an Ar matrix was carried out both for thermodynamic equilibrium and for the case of non-equilibrium population of para- and ortho-states. For the analysis of possible interaction of vibration-rotational and translational motions of a water molecule in an Ar matrix by 3D Schrödinger equation solving using discrete variable representation (DVR) method, calculations of translational frequencies of Н2О in a cage formed after one argon atom deleting were carried out. The results of theoretical calculations were compared to experimental data taken from literature.
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Affiliation(s)
- G Pitsevich
- Belarusian State University, 220030 Minsk, Nezavisimosti ave., 4, Belarus.
| | - I Doroshenko
- Taras Shevchenko National University of Kyiv, Volodymyrska str., 64/13, 01601 Kyiv, Ukraine
| | - А Malevich
- Belarusian State University, 220030 Minsk, Nezavisimosti ave., 4, Belarus
| | - Е Shalamberidze
- Belarusian State University, 220030 Minsk, Nezavisimosti ave., 4, Belarus
| | - V Sapeshko
- University of Illinois at Chicago, Chicago, USA
| | - V Pogorelov
- Taras Shevchenko National University of Kyiv, Volodymyrska str., 64/13, 01601 Kyiv, Ukraine
| | - L G M Pettersson
- Department of Physics, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
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9
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Brahmachari U, Barry BA. Dynamics of Proton Transfer to Internal Water during the Photosynthetic Oxygen-Evolving Cycle. J Phys Chem B 2016; 120:11464-11473. [DOI: 10.1021/acs.jpcb.6b10164] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Udita Brahmachari
- Department of Chemistry and
Biochemistry and the Petit Institute for Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Bridgette A. Barry
- Department of Chemistry and
Biochemistry and the Petit Institute for Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
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10
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11
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Lopes S, Fausto R, Khriachtchev L. Acetic acid-water complex: The first observation of structures containing the higher-energy acetic acid conformer. J Chem Phys 2016; 144:084308. [PMID: 26931703 DOI: 10.1063/1.4942027] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Non-covalent interaction of acetic acid (AA) and water is studied experimentally by IR spectroscopy in a nitrogen matrix and theoretically at the MP2 and coupled-cluster with single and double and perturbative triple excitations [CCSD(T)]/6-311++G(2d,2p) levels of theory. This work is focused on the first preparation and characterization of complexes of higher-energy (cis) conformer of AA with water. The calculations show three 1:1 structures for the trans-AA⋯H2O complexes and three 1:1 structures for the cis-AA⋯H2O complexes. Two trans-AA⋯H2O and two cis-AA⋯H2O complexes are found and structurally assigned in the experiments. The two cis-AA⋯ ⋅ H2O complexes are obtained by annealing of a matrix containing water and cis-AA molecules prepared by selective vibrational excitation of the ground-state trans form. The less stable trans-AA⋯H2O complex is obtained by vibrational excitation of the less stable cis-AA⋯H2O complex. In addition, the 1:2 complexes of trans-AA and cis-AA with water molecules are studied computationally and the most stable forms of the 1:2 complexes are experimentally identified.
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Affiliation(s)
- Susy Lopes
- CQC, Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
| | - Rui Fausto
- CQC, Department of Chemistry, University of Coimbra, Rua Larga, P-3004-535 Coimbra, Portugal
| | - Leonid Khriachtchev
- Department of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
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12
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Czarnecki MA, Morisawa Y, Futami Y, Ozaki Y. Advances in Molecular Structure and Interaction Studies Using Near-Infrared Spectroscopy. Chem Rev 2015; 115:9707-44. [DOI: 10.1021/cr500013u] [Citation(s) in RCA: 146] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Yusuke Morisawa
- Department
of Chemistry, School of Science and Engineering, Kinki University, Higashi-Osaka, Osaka 577-8502, Japan
| | - Yoshisuke Futami
- Department
of Biological and Chemical Systems Engineering, National Institute of Technology, Kumamoto College, Yatsushiro, Kumamoto 866-8501, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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13
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14
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Hama T, Watanabe N. Surface Processes on Interstellar Amorphous Solid Water: Adsorption, Diffusion, Tunneling Reactions, and Nuclear-Spin Conversion. Chem Rev 2013; 113:8783-839. [DOI: 10.1021/cr4000978] [Citation(s) in RCA: 211] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tetsuya Hama
- Institute of Low Temperature
Science, Hokkaido University, N19W8 Kita-ku, Sapporo, Hokkaido 060-0819, Japan
| | - Naoki Watanabe
- Institute of Low Temperature
Science, Hokkaido University, N19W8 Kita-ku, Sapporo, Hokkaido 060-0819, Japan
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15
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Wu L, Lambo R, Tan Y, Liu AW, Hu SM. Phonon coupling of water monomers in a solid nitrogen matrix. J Chem Phys 2013; 138:114303. [PMID: 23534635 DOI: 10.1063/1.4795235] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The infrared absorption spectra of the H2O, HDO, and D2O monomers isolated in solid N2 have been recorded at various temperatures between 4 and 30 K. A study of the absorption features of the ν1, ν2, and ν3 vibrational modes for each monomer shows their optical line shapes to be strongly temperature dependent. For all three modes, a decrease in the absorption amplitude and a proportional broadening of the linewidth was observed with increasing temperature, while the integrated absorbance remained constant. These observations were explained in terms of phonon coupling, by which high frequency intramolecular modes decay by exciting matrix phonons. Fits of the linewidth for the lowest frequency ν2 vibrational mode to the predicted vibrational relaxation rate in a solid medium gave average phonon mode frequencies consistent with the Debye frequency for solid N2.
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Affiliation(s)
- L Wu
- Hefei National Laboratory for Physical Science at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China
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16
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Isomerization around C–C and C–O bonds in 1-propanol: Collisional relaxation in supersonic jets and selective IR photo-isomerization in cryogenic matrices. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2011.12.034] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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17
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Salmi T, Sälli E, Halonen L. A Nine-Dimensional Calculation of the Vibrational OH Stretching and HOH Bending Spectrum of the Water Trimer. J Phys Chem A 2012; 116:5368-74. [DOI: 10.1021/jp3017584] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Teemu Salmi
- Laboratory
of Physical Chemistry, Department of Chemistry,
A.I. Virtasen aukio 1 (P.O. BOX 55), FI-00014, University of Helsinki, Finland
| | - Elina Sälli
- Laboratory
of Physical Chemistry, Department of Chemistry,
A.I. Virtasen aukio 1 (P.O. BOX 55), FI-00014, University of Helsinki, Finland
| | - Lauri Halonen
- Laboratory
of Physical Chemistry, Department of Chemistry,
A.I. Virtasen aukio 1 (P.O. BOX 55), FI-00014, University of Helsinki, Finland
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18
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Rocher-Casterline BE, Ch'ng LC, Mollner AK, Reisler H. Communication: determination of the bond dissociation energy (D0) of the water dimer, (H2O)2, by velocity map imaging. J Chem Phys 2012; 134:211101. [PMID: 21663337 DOI: 10.1063/1.3598339] [Citation(s) in RCA: 183] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The bond dissociation energy (D(0)) of the water dimer is determined by using state-to-state vibrational predissociation measurements following excitation of the bound OH stretch fundamental of the donor unit of the dimer. Velocity map imaging and resonance-enhanced multiphoton ionization (REMPI) are used to determine pair-correlated product velocity and translational energy distributions. H(2)O fragments are detected in the ground vibrational (000) and the first excited bending (010) states by 2 + 1 REMPI via the C̃ (1)B(1) (000) ← X̃ (1)A(1) (000 and 010) transitions. The fragments' velocity and center-of-mass translational energy distributions are determined from images of selected rovibrational levels of H(2)O. An accurate value for D(0) is obtained by fitting both the structure in the images and the maximum velocity of the fragments. This value, D(0) = 1105 ± 10 cm(-1) (13.2 ± 0.12 kJ/mol), is in excellent agreement with the recent theoretical value of D(0) = 1103 ± 4 cm(-1) (13.2 ± 0.05 kJ∕mol) suggested as a benchmark by Shank et al. [J. Chem. Phys. 130, 144314 (2009)].
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Tremblay B, Bouteiller Y, Perchard J. Identification of two quanta simultaneous vibrational transitions in the dimer water trapped in inert matrices. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.02.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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20
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Vaida V, Kjaergaard HG, Feierabend KJ. Hydrated Complexes: Relevance to Atmospheric Chemistry and Climate. INT REV PHYS CHEM 2010. [DOI: 10.1080/0144235031000075780] [Citation(s) in RCA: 102] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Veronica Vaida
- a Department of Chemistry and Biochemistry and CIRES , University of Colorado , Campus Box 215, Boulder , CO , 80309 , USA
| | - Henrik G. Kjaergaard
- b Department of Chemistry , University of Otago , PO Box 56, Dunedin , New Zealand
| | - Karl J. Feierabend
- a Department of Chemistry and Biochemistry and CIRES , University of Colorado , Campus Box 215, Boulder , CO , 80309 , USA
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Bégué D, Baraille I, Garrain PA, Dargelos A, Tassaing T. Calculation of IR frequencies and intensities in electrical and mechanical anharmonicity approximations: Application to small water clusters. J Chem Phys 2010; 133:034102. [DOI: 10.1063/1.3457482] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Campen RK, Kubicki JD. Interaction energy and the shift in OH stretch frequency on hydrogen bonding for the H2O --> H2O, CH3OH --> H2O, and H2O --> CH3OH dimers. J Comput Chem 2010; 31:963-72. [PMID: 19655308 DOI: 10.1002/jcc.21380] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The ability to use calculated OH frequencies to assign experimentally observed peaks in hydrogen bonded systems hinges on the accuracy of the calculation. Here we test the ability of several commonly employed model chemistries--HF, MP2, and several density functionals paired with the 6-31+G(d) and 6-311++G(d,p) basis sets--to calculate the interaction energy (D(e)) and shift in OH stretch fundamental frequency on dimerization (delta(nu)) for the H(2)O --> H(2)O, CH(3)OH --> H(2)O, and H(2)O --> CH(3)OH dimers (where for X --> Y, X is the hydrogen bond donor and Y the acceptor). We quantify the error in D(e) and delta(nu) by comparison to experiment and high level calculation and, using a simple model, evaluate how error in D(e) propagates to delta(nu). We find that B3LYP and MPWB1K perform best of the density functional methods studied, that their accuracy in calculating delta(nu) is approximately 30-50 cm(-1) and that correcting for error in D(e) does little to heighten agreement between the calculated and experimental delta(nu). Accuracy of calculated delta(nu) is also shown to vary as a function of hydrogen bond donor: while the PBE and TPSS functionals perform best in the calculation of delta(nu) for the CH(3)OH --> H(2)O dimer their performance is relatively poor in describing H(2)O --> H(2)O and H(2)O --> CH(3)OH.
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Affiliation(s)
- Richard Kramer Campen
- Department of Geosciences and the Earth and Environmental Systems Institute, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
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23
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Moudens A, Georges R, Goubet M, Makarewicz J, Lokshtanov SE, Vigasin AA. Direct absorption spectroscopy of water clusters formed in a continuous slit nozzle expansion. J Chem Phys 2009; 131:204312. [DOI: 10.1063/1.3264576] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Hänninen V, Salmi T, Halonen L. Acceptor Tunneling Motion and O−H Stretching Vibration Overtones of the Water Dimer. J Phys Chem A 2009; 113:7133-7. [DOI: 10.1021/jp901974z] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vesa Hänninen
- Laboratory of Physical Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 Helsinki, Finland
| | - Teemu Salmi
- Laboratory of Physical Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 Helsinki, Finland
| | - Lauri Halonen
- Laboratory of Physical Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 Helsinki, Finland
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25
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Garden AL, Halonen L, Kjaergaard HG. Calculated Band Profiles of the OH-Stretching Transitions in Water Dimer. J Phys Chem A 2008; 112:7439-47. [DOI: 10.1021/jp802001g] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Anna L. Garden
- Department of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
| | - Lauri Halonen
- Laboratory of Physical Chemistry, P.O Box 55, FIN-00014 University of Helsinki, Finland
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand, and The Lundbeck Foundation Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, DK-8000, Aarhus C, Denmark
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Czarnecki MA, Wojtków D. Effect of varying water content on the structure of butyl alcohol/water mixtures: FT-NIR two-dimensional correlation and chemometric studies. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2007.11.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Salmi T, Hänninen V, Garden AL, Kjaergaard HG, Tennyson J, Halonen L. Calculation of the O−H Stretching Vibrational Overtone Spectrum of the Water Dimer. J Phys Chem A 2008; 112:6305-12. [DOI: 10.1021/jp800754y] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Teemu Salmi
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Vesa Hänninen
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Anna L. Garden
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Henrik G. Kjaergaard
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Jonathan Tennyson
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Lauri Halonen
- Laboratory of Physical Chemistry, P.O. Box 55 (A.I. Virtasen aukio 1), FIN-00014 University of Helsinki, Finland, Department of Chemistry, University of Otago, P.O. Box 56, 9054 Dunedin, New Zealand, and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
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Kjaergaard HG, Garden AL, Chaban GM, Gerber RB, Matthews DA, Stanton JF. Calculation of Vibrational Transition Frequencies and Intensities in Water Dimer: Comparison of Different Vibrational Approaches. J Phys Chem A 2008; 112:4324-35. [DOI: 10.1021/jp710066f] [Citation(s) in RCA: 152] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
| | | | - Galina M. Chaban
- NASA Ames Research Center, Mail Stop T27B-1, Moffett Field, California 94035-1000
| | - R. Benny Gerber
- Department of Chemistry, University of California, Irvine, California 92697 and Department of Physical Chemistry and The Fritz Haber Research Center, The Hebrew University, Jerusalem 91904, Israel
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29
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Perchard J, Romain F, Bouteiller Y. Determination of vibrational parameters of methanol from matrix-isolation infrared spectroscopy and ab initio calculations. Part 1 – Spectral analysis in the domain 11000–200cm−1. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.10.007] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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30
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Schofield DP, Lane JR, Kjaergaard HG. Hydrogen bonded OH-stretching vibration in the water dimer. J Phys Chem A 2007; 111:567-72. [PMID: 17249744 DOI: 10.1021/jp063512u] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We have calculated the frequencies and intensities of the hydrogen-bonded OH-stretching transitions in the water dimer complex. The potential-energy curve and dipole-moment function are calculated ab initio at the coupled cluster with singles, doubles, and perturbative triples level of theory with correlation-consistent Dunning basis sets. The vibrational frequencies and wavefunctions are found from a numerical solution to a one-dimensional Schrödinger equation. The corresponding transition intensities are found from numerical integration of these vibrational wavefunctions with the ab initio calculated dipole moment function. We investigate the effect of counterpoise correcting both the potential-energy surface and dipole-moment function. We find that the effect of using a numeric potential is significant for higher overtones and that inclusion of a counterpoise correction for basis set superposition error is important.
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Affiliation(s)
- Daniel P Schofield
- Department of Chemistry, University of Otago, P.O. Box 56, Dunedin, New Zealand
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33
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Hirabayashi S, Yamada KM. Infrared spectra and structure of water clusters trapped in argon and krypton matrices. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2006.02.019] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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34
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Ohno K, Takao H, Katsumoto Y. Geometrical behavior of hydrogen bonding patterns in the alpha-dodecyl-omega-hydroxy-tris(oxyethylene)-water system monitored by near infrared spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2006; 63:690-3. [PMID: 16024280 DOI: 10.1016/j.saa.2005.06.020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2005] [Accepted: 06/10/2005] [Indexed: 05/03/2023]
Abstract
Changes in the geometry of hydrogen bonding patterns in the alpha-dodecyl-omega-hydroxy-tris(oxyethylene) (C(12)E(3))-water system have been investigated by near infrared (NIR) spectroscopy. In the 5,300-4,600 cm(-1) region, the characteristic bands for C(12)E(3) and water can be separately investigated, since the combination bands of the OH stretching and its COH bending of alcohols are observed at 5,000-4,650 cm(-1), whereas the combination bands of the OH stretching and its HOH bending of water, at 5,300-5,000 cm(-1). The NIR result has revealed that the addition of water to C(12)E(3) promotes the formation of the OHcdots, three dots, centeredOHcdots, three dots, centeredO hydrogen bonds.
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Affiliation(s)
- Keiichi Ohno
- Department of Chemistry, Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
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35
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Vibrational anharmonicity of acetic acid studied by matrix-isolation near-infrared spectroscopy and DFT calculation. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2005.08.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Nizkorodov SA, Ziemkiewicz M, Nesbitt DJ, Knight AEW. Overtone spectroscopy of H2O clusters in the vOH=2 manifold: Infrared-ultraviolet vibrationally mediated dissociation studies. J Chem Phys 2005; 122:194316. [PMID: 16161582 DOI: 10.1063/1.1899157] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Spectroscopy and predissociation dynamics of (H2O)2 and Ar-H2O are investigated with vibrationally mediated dissociation (VMD) techniques, wherein upsilon(OH) = 2 overtones of the complexes are selectively prepared with direct infrared pumping, followed by 193 nm photolysis of the excited H2O molecules. As a function of relative laser timing, the photolysis breaks H2O into OH and H fragments either (i) directly inside the complex or (ii) after the complex undergoes vibrational predissociation, with the nascent quantum state distribution of the OH photofragment probed via laser-induced fluorescence. This capability provides the first rotationally resolved spectroscopic analysis of (H2O)2 in the first overtone region and vibrational predissociation dynamics of water dimer and Ar-water clusters. The sensitivity of the VMD approach permits several upsilon(OH) = 2 overtone bands to be observed, the spectroscopic assignment of which is discussed in the context of recent anharmonic theoretical calculations.
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37
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Vigasin A, Pavlyuchko A, Jin Y, Ikawa S. Density evolution of absorption bandshapes in the water vapor OH-stretching fundamental and overtone: evidence for molecular aggregation. J Mol Struct 2005. [DOI: 10.1016/j.molstruc.2004.12.060] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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38
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Czarnecki MA, Haufa KZ. Effect of Temperature and Concentration on the Structure of N-Methylacetamide−Water Complexes: Near-Infrared Spectroscopic Study. J Phys Chem A 2005; 109:1015-21. [PMID: 16833408 DOI: 10.1021/jp0471150] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Generalized two-dimensional (2D) FT-NIR correlation spectroscopy and chemometric methods have been used to study temperature-dependent spectral changes in pure N-methylacetamide (NMA) and NMA-water mixtures. We also examined the effect of varying water content on the structure of the mixture. It has been found that the extent of self-association of NMA in CCl4 is very high; the association occurs even at concentration of 0.001 M. In the pure liquid NMA, the population of the monomers is negligible and the structure is dominated by the linear associates. An increase in temperature reduces the number of hydrogen bonds, but in contrast to alcohols their strength remains nearly the same. This reflects a difference in the mechanism of thermal breaking of the associates of NMA and alcohols. The present results reveal that the interaction between NMA and water in the NMA-rich region (X(H2O) < 0.1) does not have a significant effect on the intrinsic structure of NMA. The structure of NMA is dominant, and the molecules of water do not form separate clusters but are dispersed and incorporated into the structure of NMA. We did not observe the presence of the free OH groups in the mixture. This led to the suggestion that each molecule of water forms two hydrogen bonds to two different molecules of NMA. An analysis of the asynchronous spectra reveals that most of the peaks observed in the asynchronous spectra, constructed from the temperature-dependent data, simply result from the frequency shift. This assumption is supported by the simulation studies.
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Affiliation(s)
- Mirosław A Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland.
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39
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The vibrational spectrum of (H2O)2: comparison between anharmonic ab initio calculations and neon matrix infrared data between 9000 and 90 cm−1. Chem Phys 2004. [DOI: 10.1016/j.chemphys.2004.06.028] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Coussan S, Roubin P, Perchard JP. Hydrogen Bonding in ROH:R‘OH (R, R‘ = H, CH3, C2H5) Heterodimers: Matrix-Dependent Structure and Infrared-Induced Isomerization. J Phys Chem A 2004. [DOI: 10.1021/jp048303t] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- S. Coussan
- Laboratoire PIIM, UMR 6633, Equipe SDM, Service 242, Université de Provence, CNRS, Centre Saint-Jérôme, 13397 Marseille Cedex 20, France, and Laboratoire de Dynamique, Interactions et Réactivité, CNRS UMR 7075, Université Pierre et Marie Curie, Bâtiment F 74, case courrier 49, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - P. Roubin
- Laboratoire PIIM, UMR 6633, Equipe SDM, Service 242, Université de Provence, CNRS, Centre Saint-Jérôme, 13397 Marseille Cedex 20, France, and Laboratoire de Dynamique, Interactions et Réactivité, CNRS UMR 7075, Université Pierre et Marie Curie, Bâtiment F 74, case courrier 49, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - J. P. Perchard
- Laboratoire PIIM, UMR 6633, Equipe SDM, Service 242, Université de Provence, CNRS, Centre Saint-Jérôme, 13397 Marseille Cedex 20, France, and Laboratoire de Dynamique, Interactions et Réactivité, CNRS UMR 7075, Université Pierre et Marie Curie, Bâtiment F 74, case courrier 49, 4 Place Jussieu, 75252 Paris Cedex 05, France
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41
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Czarnecki MA, Wojtków D. Two-Dimensional FT-NIR Correlation Study of Hydrogen Bonding in the Butan-1-ol/ Water System. J Phys Chem A 2004. [DOI: 10.1021/jp035820n] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mirosław A. Czarnecki
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Dagmara Wojtków
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
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42
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Jin Y, Ikawa SI. Near-infrared spectroscopic study of water at high temperatures and pressures. J Chem Phys 2003. [DOI: 10.1063/1.1628667] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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43
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Kjaergaard HG, Robinson TW, Howard DL, Daniel JS, Headrick JE, Vaida V. Complexes of Importance to the Absorption of Solar Radiation. J Phys Chem A 2003. [DOI: 10.1021/jp035098t] [Citation(s) in RCA: 100] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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44
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45
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Ignatyev IS, Partal F, López González JJ. Effect of the Silyl Substitution on Structure and Vibrational Spectra of Hydrogen-Bonded Networks in Dimers, Cyclic Trimers, and Tetramers. J Phys Chem A 2002. [DOI: 10.1021/jp0217233] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Igor S. Ignatyev
- Departamento de Química Física y Analítica, Facultad de Ciencias Experimentales, Universidad de Jaén, Campus Universitario de “Las Lagunillas”, Edif. B-3,E-23071 Jaén, Spain
| | - F. Partal
- Departamento de Química Física y Analítica, Facultad de Ciencias Experimentales, Universidad de Jaén, Campus Universitario de “Las Lagunillas”, Edif. B-3,E-23071 Jaén, Spain
| | - J. J. López González
- Departamento de Química Física y Analítica, Facultad de Ciencias Experimentales, Universidad de Jaén, Campus Universitario de “Las Lagunillas”, Edif. B-3,E-23071 Jaén, Spain
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46
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Kjaergaard HG, Low GR, Robinson TW, Howard DL. Calculated OH-Stretching Vibrational Transitions in the Water−Nitrogen and Water−Oxygen Complexes. J Phys Chem A 2002. [DOI: 10.1021/jp020542y] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Henrik G. Kjaergaard
- Department of Chemistry, University of Otago, P. O. Box 56, Dunedin, New Zealand
| | - Geoffrey R. Low
- Department of Chemistry, University of Otago, P. O. Box 56, Dunedin, New Zealand
| | - Timothy W. Robinson
- Department of Chemistry, University of Otago, P. O. Box 56, Dunedin, New Zealand
| | - Daryl L. Howard
- Department of Chemistry, University of Otago, P. O. Box 56, Dunedin, New Zealand
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47
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Kjaergaard HG. Calculated OH-Stretching Vibrational Transitions of the Water−Nitric Acid Complex. J Phys Chem A 2002. [DOI: 10.1021/jp014018n] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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48
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Anharmonicity and hydrogen bonding. III. Analysis of the near infrared spectrum of water trapped in argon matrix. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00496-7] [Citation(s) in RCA: 122] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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