Gas phase dihydrogen bonding: clusters of borane-amines with phenol and aniline

Carbon-Centered Hydrogen Bonds in Proteins

Hydrogen bonding (H-bonding) without lone pair(s) of electrons and π-electrons is a concept developed 2-3 years ago. H-bonds involving less electronegative tetrahedral carbon are beyond the classical concept of H-bonds. Herein, we present the first report on H-bonds with tetravalent carbons in proteins. A special bonding arrangement is needed to increase the negative charge density around the sp³-hybridized carbon atom. Therefore, less electronegative elements such as As and Mg, when bonded to sp³-C, enable the C-atoms as H-bond acceptors. Careful protein structure analysis aided by several quantum chemical calculations suggests that these H-bonds are weak to moderate in strength. We developed an empirical equation to estimate the C-H···C H-bond energy in proteins from the distances between the C- and H-atoms. In proteins, the binding energies range from -5.4 to -14.0 kJ/mol. The C-H···C H-bonds assist the substrate binding in proteins. We also explored the potential role of these carbon-centered H-bonds in C-H bond activation through σ-bond metathesis. To our surprise, contribution from these H-bonds is almost of similar magnitude as that from C-H···π H-bonds for C-H bond activation.

A comprehensive infrared spectroscopic and theoretical study on phenol-ethyldimethylsilane dihydrogen-bonded clusters in the S0 and S1 states

To investigate microscopic characters of Si-H⋯H-O type dihydrogen bonds, we observed OH and SiH stretch bands in both the S₀ and S₁ states of phenol-ethyldimethylsilane (PhOH-EDMS) clusters by infrared (IR)-ultraviolet (UV) and UV-IR double resonance spectroscopies. Density functional theory (DFT) calculations and energy decomposition analysis were also performed. Structures of two isomers identified were unambiguously determined through the analysis of IR spectra and DFT calculations. To discuss the strength of dihydrogen bond in various systems, we performed theoretical calculations on clusters of EDMS with several acidic molecules in addition to PhOH. It was revealed that charge-transfer interaction energies from a bonding σ orbital of SiH bond to an anti-bonding σ^* orbital of OH bond well reflect strengths of dihydrogen bonds. Additionally, it was found that the red shift of SiH stretch frequencies can be used as a crude measure of the strength of dihydrogen bonds. Relationship between the red shifts of OH/SiH stretch frequencies and various electrostatic components of the interaction energy was examined. In the S₁ state, large increases in red shifts were observed for both the OH and SiH stretch frequencies. Since the EDMS moiety is not associated with the electronic excitation in a cluster, the strength of dihydrogen bonds in the S₁ and S₀ states was able to be directly compared based on the red shifts of the SiH stretch bands. A significant increase in the red shift of SiH stretch frequency indicates a strengthening of the dihydrogen bonds during the electronic excitation of the PhOH moiety.

Non-covalent interactions with inverted carbon: a carbo-hydrogen bond or a new type of hydrogen bond?

Crystal structure analysis and quantum chemical calculations enabled us to discover a new non-covalent interaction, coined as carbo-hydrogen bond (C_H-bond).

The borazine dimer: the case of a dihydrogen bond competing with a classical hydrogen bond

Dimers of borazine were studied using matrix isolation infrared spectroscopy and ab initio quantum chemical calculations. Computations were performed at the MP2 and M06-2X levels of theory using the 6-311++G(d,p) and aug-cc-pVDZ basis sets for the various homodimers. At both levels of theory, an aligned stacked structure was found to be the global minimum, which was nearly isoenergetic to a parallel displaced structure. A T-shaped structure, where the N-H of one borazine pointed towards the N of the second borazine, was found to be a local minimum. In addition to these structures, a dihydrogen bonded structure, where the hydrogen attached to the nitrogen of borazine interacted with the hydrogen attached to the boron atom of another borazine, was also indicated. Experimentally, we observed the T-shaped dimer and the dihydrogen bonded dimer. This is one of the rare examples of experimental evidence for a dihydrogen bond, in a system other than in a metal hydride. These results for the borazine dimer were clearly different from the benzene dimer where the parallel displaced structure was found to be the global minimum followed by the T-shaped structure at the MP2/aug-cc-pVDZ level of theory. AIM, EDA and NBO analyses were carried out for all the structures to explore the nature of interactions.

Dihydrogen bond intermediated alcoholysis of dimethylamine-borane in nonaqueous media

Dimethylamine-borane (DMAB) acid/base properties, its dihydrogen-bonded (DHB) complexes and proton transfer reaction in nonaqueous media were investigated both experimentally (IR, UV/vis, NMR, and X-ray) and theoretically (DFT, NBO, QTAIM, and NCI). The effects of DMAB concentration, solvents polarity and temperature on the degree of DMAB self-association are shown and the enthalpy of association is determined experimentally for the first time (-ΔH°assoc = 1.5-2.3 kcal/mol). The first case of "improper" (blue-shifting) NH···F hydrogen bonds was observed in fluorobenzene and perfluorobenzene solutions. It was shown that hydrogen-bonded complexes are the intermediates of proton transfer from alcohols and phenols to DMAB. The reaction mechanism was examined computationally taking into account the coordinating properties of the reaction media. The values of the rate constants of proton transfer from HFIP to DMAB in acetone were determined experimentally [(7.9 ± 0.1) × 10(-4) to (1.6 ± 0.1) × 10(-3) mol(-1)·s(-1)] at 270-310 K. Computed activation barrier of this reaction ΔG(‡theor)298 K(acetone) = 23.8 kcal/mol is in good agreement with the experimental value of the activation free energy ΔG(‡exp)270 K = 21.1 kcal/mol.

Theoretical study on the dehydrogenation reaction of dihydrogen bonded phenol–borane-trimethylamine in the excited state

No dehydrogenation reaction occurs in the ground state of dihydrogen bonded phenol–BTMA. TS-S₁₀ points to the formation of a hydrogen molecule, while TS-S₁₁ points to the B atom. The dehydrogenation reaction along TS-S₁₀ is energy favorable, unlike that along TS-S₁₁.

Defining the hydrogen bond: An account (IUPAC Technical Report)

The term “hydrogen bond” has been used in the literature for nearly a century now. While its importance has been realized by physicists, chemists, biologists, and material scientists, there has been a continual debate about what this term means. This debate has intensified following some important experimental results, especially in the last decade, which questioned the basis of the traditional view on hydrogen bonding. Most important among them are the direct experimental evidence for a partial covalent nature and the observation of a blue-shift in stretching frequency following X–H···Y hydrogen bond formation (XH being the hydrogen bond donor and Y being the hydrogen bond acceptor). Considering the recent experimental and theoretical advances, we have proposed a new definition of the hydrogen bond, which emphasizes the need for evidence. A list of criteria has been provided, and these can be used as evidence for the hydrogen bond formation. This list is followed by some characteristics that are observed in typical hydrogen-bonding environments.

Time-dependent density functional theory study on excited-state dihydrogen bonding O-H···H-Ge of the dihydrogen-bonded phenol-triethylgermanium complex

Intermolecular dihydrogen bond O-H···H-Ge in the electronically excited state of the dihydrogen-bonded phenol-triethylgermanium (TEGH) complex was studied theoretically using time-dependent density functional theory. Analysis of the frontier molecular orbitals revealed a locally excited S(1) state in which only the phenol moiety is electronically excited. In the predicted infrared spectrum of the dihydrogen-bonded phenol-TEGH complex, the O-H stretching vibrational mode shifts to a lower frequency in the S(1) state in comparison with that in ground state. The Ge-H stretching vibrational mode demonstrates a relatively smaller redshift than the O-H stretching vibrational mode. Upon electronic excitation to the S(1) state, the O-H and Ge-H bonds involved in the dihydrogen bond both get lengthened, whereas the C-O bond is shortened. With an increased binding energy, the calculated H···H distance significantly decreases in the S(1) state. Thus, the intermolecular dihydrogen bond O-H···H-Ge of the dihydrogen-bonded phenol-TEGH complex becomes stronger in the electronically excited state than that in the ground state.

Competition between hydrogen and dihydrogen bonding: interaction of B2H6 with CH3OH and CH(n)X(3-n)OH derivatives

Ab initio calculations were used to analyze the interactions between a molecule of B(2)H(6) with CH(3)OH and CH(n)X(3-n)OH (X = F, Cl and n = 0,1,2) derivatives at the MP2/6-311++G(d,p) computational level. Interaction of B(2)H(6) with CH(3)OH occurs through its bridged protons to form a hydrogen bond cluster. On the other hand, CH(n)X(3-n)OH molecules interact with B(2)H(6) by a H(t)...H dihydrogen bond along with a weak H(b)...X interaction. The structures obtained have been analyzed with the atoms in molecules (AIMs) methodology. AIM calculations indicate van der Waal's interactions of X with H(b) of B(2)H(6). The stability of the clusters depends on the type and number of X derivatives.

Infrared-optical double-resonance measurements on O-H...H-Ge dihydrogen-bonded phenol-triethylgermanium hydride complex in the gas phase

Spectroscopic investigation of a dihydrogen-bonded complex between phenol and triethylgermanium hydride is reported here. Laser-induced fluorescence excitation, fluorescence-detected infrared, and IR-UV hole-burning spectroscopic studies were carried out in supersonic jet to investigate the complex formation between phenol and triethylgermanium hydride. The lowering of the O-H stretching frequency of the phenol moiety in the complex with triethylgermanium hydride clearly establishes the role of phenol as hydrogen bond donor. The experimental results together with the ab-initio calculations unambiguously confirm formation of an O-H...H-Ge dihydrogen-bonded complex between phenol and triethylgermanium hydride.

Novel infrared spectra for intermolecular dihydrogen bonding of the phenol-borane-trimethylamine complex in electronically excited state

The intermolecular dihydrogen bonding in the electronically excited states of the dihydrogen-bonded phenol-BTMA complex in gas phase was theoretically investigated using the time-dependent density functional theory method for the first time. It was theoretically demonstrated that the S(1) state of the dihydrogen-bonded phenol-BTMA complex is a locally excited state, in which only the phenol moiety is electronically excited. The infrared spectra of the dihydrogen-bonded phenol-BTMA complex in ground state and the S(1) state were calculated at both the O-H and B-H stretching vibrational regions. A novel infrared spectrum of the dihydrogen-bonded phenol-BTMA complex in the electronically excited state was found. The stretching vibrational absorption bands of the dihydrogen-bonded O-H and B-H groups are very strong in the ground state, while they are disappeared in the S(1) state. At the same time, a new strong absorption band appears at the C[Double Bond]O stretching region. From the calculated bond lengths, it was found that both the O-H and B-H bonds in the dihydrogen bond O-H...H-B are significantly lengthened in the S(1) state of the dihydrogen-bonded phenol-BTMA complex. However, the C-O bond in the phenol moiety is markedly shortened in the excited state, and then has the characteristics of C[Double Bond]O group. Furthermore, it was demonstrated that the intermolecular dihydrogen bonds in the electronically excited state of the dihydrogen-bonded phenol-BTMA complex are strengthened, since calculated H...H distance is drastically shortened in the S(1) state.

Proton Affinity Correlations between Hydrogen and Dihydrogen Bond Acceptors

Several series of hydrogen- and dihydrogen-bonded complexes with HCN, C2H2, HF, H2O, CH3CONH2, and CH3COOH as donors and H2O, MeOH, EtOH, MeOMe, NH3, NH2Me, NHMe2, NMe3, NEtMe2, and BH3-NMe3 as acceptors were investigated using the MP2/6-311++G(d,p) level of theory. The total lowering of the X-H stretching frequencies in the hydrogen-bonded complexes were linearly correlated with the proton affinities of the accepting bases. From comparison of hydrogen- and dihydrogen-bonded complexes, a scaling factor to estimate the exact proton affinity of a dihydrogen bond acceptor was developed. Further, the scaling factor involving linear donors (1.204) is marginally higher than that involving nonlinear donor molecules (1.162). Finally, it was found that, given identical conditions, a hydrogen bond will be about 16-20% stronger than a corresponding dihydrogen bond.

First observation of a dihydrogen bond involving the Si–H group in phenol-diethylmethylsilane clusters by infrared-ultraviolet double-resonance spectroscopy

We have experimentally identified a dihydrogen bond involving the Si-H group in phenol-diethylmethylsilane (DEMS) clusters for the first time by IR-UV double-resonance spectroscopy. Vibrational shifts to lower frequency of 21-29 cm(-1) were found for the OH stretching vibration of three isomers of the phenol-DEMS clusters. Spectral simulations based on the MP2 calculations also support our observation. In addition to these clusters, dihydrogen bonds were also observed in the phenol-H(2)O-DEMS and (phenol)(2)-DEMS clusters, which exhibited much stronger interactions than the phenol-DEMS clusters.

Proton Affinities of Borane−Amines: Consequences on Dihydrogen Bonding

The calculated proton affinities of four borane-amines using Gaussian-2 theory have been found to be comparable to conventional bases such as water, methanol, and ammonia. On the other hand the structure of protonated borane-ammonia, [HBH(3)-NH(3)](+), is found to be drastically different from that of protonated ammonia, [HNH(3)](+), and can appropriately be described as a eta(2)-H(2) complex with [BH(2)-NH(3)](+) molecular cation. Further, the proton affinities of borane-amines are related to the ease of H(2) elimination.

C-H···H-C interactions in organoammonium tetraphenylborates: another look at dihydrogen bonds

The crystal structures of the tetraphenylborates of the dabcoH+, guanidinium (MeCN solvate), and biguanidinium cations are shown to contain a variety of C-H···H-C dihydrogen (DB) bonds of nominally zero polarity, as well as a variety of N-H···N, C-H···N, N-H···Ph, and C-H···Ph hydrogen (HB) bonds. These intermolecular bonds have been characterized topologically after multipole refinement of the structures. The coexistence of the DBs and HBs in each of the structures makes it possible to establish their relative strength hierarchy. It also illustrates the importance of the DBs in satisfying the tendency of these structures to maximize the total intermolecular bonding engagement. To compare the above DBs with other DBs, the results of an extensive set of MP2/6-31G(d,p) calculations (supplied by I. Alkorta) were analyzed for reference correlations between the bond-critical parameters. Thus, for an X-H···H-Y bond, the difference Δε(H)m between the Mulliken charges on the H atoms in the uncomplexed X-H and H-Y components correlates quite well with the X-H···H-Y parameters and can be used for predicting the topological strength of an X-H···H-Y bond. The use of the difference Δε(H)c in the bond does not appear to change the correlation significantly; closer correlations are observed when the amount of charge transferred on formation of the H···H bond is used instead of Δε(H)m or Δε(H)c. Bonding interactions are obtained even between like or symmetry-related H atoms as a consequence of induced-dipole interactions, which accounts for the existence of the above intermolecular C-H···H-C bonds with d(H···H) = 2.18–2.57 Å, electron density at the bond-critical point of ~0.05–0.08 e/Å3, and a rough estimate of the H···H binding energy of ~1-5 kcal/mol. Examination of the bond-critical parameters of X-H···H-Y bonds also suggests a criterion of stability of these bonds with respect to the transition from non-shared (closed-shell) X-H···H-Y interaction to covalent (shared-shell) X···H-H···Y interaction. This transition appears to be discontinuous.Key words: bond-critical parameters, bond topology, dihydrogen bonds, hydrogen bonds, organoammonium tetraphenylborates.