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Martínez-Araya JI. The Dual Descriptor Reveals the Janus–Faced Behaviour of Diiodine. Front Chem 2022; 10:869110. [PMID: 35402386 PMCID: PMC8987536 DOI: 10.3389/fchem.2022.869110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 03/02/2022] [Indexed: 12/02/2022] Open
Abstract
The Janus–faced ligand behavior of diiodine (I2) was evidenced after applying the dual descriptor (DD or second-order Fukui function), thus providing additional support to the work performed by Rogachev and Hoffmann in 2013. Along with its capacity to reveal sites susceptible to undergo attacks simultaneously of nucleophilic and electrophilic types, another advantage of DD lies in being an orbital-free descriptor. That means it is based only upon total electron densities when written in its most accurate operational formula. This quality is not exclusive of DD because when Fukui functions are written in terms of electron densities instead of densities of frontier molecular orbitals, they become orbital-free descriptors too. Furthermore, the present work is an application of the generalized operational formula of the dual descriptor published in 2016 that takes into account any possible degeneracy in frontier molecular orbitals. As a proof about capabilities of DD, the possible sites for a favorable interaction between I2 with two organometallic compounds [Rh2(O2CCF3)4] and [(C8H11N2)Pt (CH3)] were correctly revealed by overlapping the biggest lobe for receiving nucleophilic attacks of one molecule with the biggest lobe for receiving electrophilic attacks of the other molecule, so allowing to predict the same coordination modes as experimentally known: linear “end–on” for the [(C8H11N2)Pt (CH3)]…I2, and bent “end–on” for the [Rh2(O2CCF3)4]…I2 interactions.
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Affiliation(s)
- Susi Lehtola
- Department of Chemistry, University of Helsinki, P.O. Box 55 (A. I. Virtasen aukio 1), FI-00014 Helsinki, Finland
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Brumboiu IE, Eriksson O, Norman P. Photoelectron Spectroscopy of Molecules Beyond the Electric Dipole Approximation. J Chem Theory Comput 2019; 15:5483-5494. [DOI: 10.1021/acs.jctc.9b00470] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Iulia Emilia Brumboiu
- Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden
- Department of Chemistry, Korea Advanced Institute of Science and Technology, 34141 Daejeon, Korea
| | - Olle Eriksson
- Department of Physics and Astronomy, Uppsala University, 75120 Uppsala, Sweden
- School of Science and Technology, Örebro University, 70182 Örebro, Sweden
| | - Patrick Norman
- Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden
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Brumboiu IE, Eriksson O, Norman P. Atomic photoionization cross sections beyond the electric dipole approximation. J Chem Phys 2019; 150:044306. [PMID: 30709292 DOI: 10.1063/1.5083649] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A methodology is developed to compute photoionization cross sections beyond the electric dipole approximation from response theory, using Gaussian type orbitals and plane waves for the initial and final states, respectively. The methodology is applied to compute photoionization cross sections of atoms and ions from the first four rows of the periodic table. Analyzing the error due to the plane wave description of the photoelectron, we find kinetic energy and concomitant photon energy thresholds above which the plane wave approximation becomes applicable. The correction introduced by going beyond the electric dipole approximation increases with photon energy and depends on the spatial extension of the initial state. In general, the corrections are below 10% for most elements, at a photon energy reaching up to 12 keV.
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Affiliation(s)
- Iulia Emilia Brumboiu
- Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden
| | - Olle Eriksson
- Department of Physics and Astronomy, Uppsala University, SE-75120 Uppsala, Sweden
| | - Patrick Norman
- Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, 10691 Stockholm, Sweden
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Abstract
PBE calculations, performed non-self-consistently on densities evaluated with Rung 3.5 density functionals, give improved performance for hydrogen transfer reaction barriers.
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Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry & Biochemistry
- Texas Christian University
- 2800 S. University Dr
- Fort Worth
- USA
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Janesko BG. Topological analysis of the electron delocalization range. J Comput Chem 2016; 37:1993-2005. [DOI: 10.1002/jcc.24421] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Revised: 04/01/2016] [Accepted: 05/17/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry & BiochemistryTexas Christian University2800 S. University DrFort Worth Texas76129
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Janesko BG, Wiberg KB, Scalmani G, Frisch MJ. Electron Delocalization Range in Atoms and on Molecular Surfaces. J Chem Theory Comput 2016; 12:3185-94. [DOI: 10.1021/acs.jctc.6b00343] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | - Giovanni Scalmani
- Gaussian, Inc., 340
Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
| | - Michael J. Frisch
- Gaussian, Inc., 340
Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
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Affiliation(s)
- Benjamin G. Janesko
- Department of Chemistry, Texas Christian University Fort Worth, Texas 76129, USA
| | - Giovanni Scalmani
- Gaussian, Inc., 340 Quinnipiac St., Bldg. 40 , Wallingford, Connecticut 06492, USA
| | - Michael J. Frisch
- Gaussian, Inc., 340 Quinnipiac St., Bldg. 40 , Wallingford, Connecticut 06492, USA
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Janesko BG, Scalmani G, Frisch MJ. Practical auxiliary basis implementation of Rung 3.5 functionals. J Chem Phys 2014; 141:034103. [DOI: 10.1063/1.4887085] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
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Paschoal D, Marcial BL, Lopes JF, De Almeida WB, Dos Santos HF. The role of the basis set and the level of quantum mechanical theory in the prediction of the structure and reactivity of cisplatin. J Comput Chem 2012; 33:2292-302. [DOI: 10.1002/jcc.23061] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2012] [Revised: 06/02/2012] [Accepted: 06/10/2012] [Indexed: 11/10/2022]
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Aysin RR, Leites LA, Burlakov VV, Shur VB, Beweries T, Rosenthal U. Peculiarities of Vibrational Spectra and Electronic Structure of the Five‐Membered Metallacyclocumulenes of the Group 4 Metals. Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201101088] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Rinat R. Aysin
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova Street, 119991 Moscow, Russia
| | - Larissa A. Leites
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova Street, 119991 Moscow, Russia
| | - Vladimir V. Burlakov
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova Street, 119991 Moscow, Russia
| | - Vladimir B. Shur
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova Street, 119991 Moscow, Russia
| | - Torsten Beweries
- Leibniz‐Institut für Katalyse e. V. an der Universität Rostock, Albert‐Einstein‐Strasse 29a, 18059 Rostock, Germany
| | - Uwe Rosenthal
- Leibniz‐Institut für Katalyse e. V. an der Universität Rostock, Albert‐Einstein‐Strasse 29a, 18059 Rostock, Germany
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Kannemann FO, Becke AD. Atomic volumes and polarizabilities in density-functional theory. J Chem Phys 2012; 136:034109. [DOI: 10.1063/1.3676064] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Aysin RR, Koroteev PS, Korlyukov AA, Zabula AV, Bukalov SS, Leites LA, Egorov MP, Nefedov OM. Molecular and electronic structures of germylene and stannylene complexes (CO)5MECl2·nTHF (M = Cr, W; E = Ge, Sn; n = 1, 2) as studied by IR and Raman spectroscopy, X-ray analysis, and quantum chemistry. Russ Chem Bull 2010. [DOI: 10.1007/s11172-010-0086-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Krukau AV, Scuseria GE, Perdew JP, Savin A. Hybrid functionals with local range separation. J Chem Phys 2008; 129:124103. [DOI: 10.1063/1.2978377] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Janesko BG, Scuseria GE. Parameterized local hybrid functionals from density-matrix similarity metrics. J Chem Phys 2008; 128:084111. [PMID: 18315037 DOI: 10.1063/1.2831556] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
We recently proposed a real-space similarity metric comparing the Kohn-Sham one-particle density matrix to the local spin-density approximation model density matrix [Janesko and Scuseria, J. Chem. Phys. 127, 164117 (2007)]. This metric provides a useful ingredient for constructing local hybrid density functionals that locally mix exact exchange and semilocal density functional theory exchange. Here we present two lines of inquiry: An approximate similarity metric comparing exact versus generalized gradient approximation (GGA), exchange and parameterized mixing functions using these similarity metrics. This approach yields significantly improved thermochemistry, including GGA local hybrids whose thermochemical performance approaches GGA global hybrids.
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Janesko BG, Scuseria GE. Local hybrid functionals based on density matrix products. J Chem Phys 2007; 127:164117. [PMID: 17979329 DOI: 10.1063/1.2784406] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
We present a novel similarity metric comparing exact and semilocal density functional theory (DFT) exchange holes in real space. This metric is obtained from the product of the one-particle density matrix and the uniform electron gas model density matrix. The metric is bound between 0 and 1, 1 in the uniform electron gas, 0 in regions asymptotically far from finite systems, and can detect delocalization of the exact exchange hole and effective fractional occupations. We also present a parameter-free local hybrid functional that uses this similarity metric to locally mix exact and semilocal DFT exchange energy densities. The resulting functional gives better thermochemistry and reaction barrier heights than our original local hybrids [Jaramillo et al., J. Chem. Phys. 118, 1068 (2003)], while retaining moderate accuracy for symmetric radical cation dimers.
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Keefe CD, Butler E, Gillis E, MacDonald JL. Optical constants, dielectric constants, molar absorption coefficients, molar polarizability, vibrational assignment and transition moments of liquid iodobenzene between 4000 and 400 cm(-1) at 25 degrees C. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2007; 67:125-38. [PMID: 16945575 DOI: 10.1016/j.saa.2006.06.032] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2006] [Accepted: 06/27/2006] [Indexed: 05/11/2023]
Abstract
This paper reports the complex refractive index, molar absorption coefficient and imaginary molar polarizability spectra of liquid iodobenzene at 25 degrees C. The imaginary molar polarizability spectrum was fitted with 184 classical damped harmonic bands to determine the integrated intensity of the individual transitions. The standard deviation of the fitted spectrum from the experimental spectrum is 0.024 cm(3) mol(-1), and the R(2) value of the fit is 0.9968 indicating that the fitted spectrum is an accurate representation of the experimental spectrum. The dipole moment derivatives with respect to the normal coordinates and transition moments were determined for 26 of the 30 fundamentals. The total intensities of the in-plane and out-of-plane fundamentals were compared to benzene and other monosubstituted benzene derivatives using the F-sum rule. It was found that the total intensity of the out-of-plane fundamentals is essentially the same for the different compounds while the total intensities for the in-plane fundamentals varies according to the electronegativities of the substituents.
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Affiliation(s)
- C Dale Keefe
- Department of Chemistry, Cape Breton University, Sydney, Nova Scotia, Canada B1P 6L2.
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Filho OT, Pinheiro JC, Kondo RT. Designing Gaussian basis sets to the theoretical study of the piezoelectric effect of perovskite (BaTiO3). ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.theochem.2003.10.032] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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23
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A universal basis set for cations and anions generated with the generator coordinate Hartree–Fock method. Chem Phys 1999. [DOI: 10.1016/s0301-0104(99)00268-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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24
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de Castro E, Jorge F, Pinheiro J. Accurate Gaussian basis sets for second-row atoms and ions generated with the improved generator coordinate Hartree–Fock method. Chem Phys 1999. [DOI: 10.1016/s0301-0104(99)00034-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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25
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Jorge F, de Castro E. Improved generator coordinate Hartree–Fock method: application to first-row atoms. Chem Phys Lett 1999. [DOI: 10.1016/s0009-2614(99)00144-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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de Castro EVR, Jorge FE. Accurate universal Gaussian basis set for all atoms of the Periodic Table. J Chem Phys 1998. [DOI: 10.1063/1.475959] [Citation(s) in RCA: 125] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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