Managing the rearing of Tapes philippinarum in the lagoon of Venice: a decision support system

A Weight of Evidence approach to support the assessment of the quality of Manila clam farming sites in a coastal lagoon

Aquaculture productivity in coastal lagoons is endangered by a complex interplay of anthropogenic and environmental factors, amplified by the effects of climate change in these sensitive areas. To reach a more comprehensive assessment of farming sites quality, a quantitative Weight of Evidence approach (QWoE) is applied for the first time to data collected at four Manila clam (R. philippinarum) farming sites in the Venice lagoon (Italy). This included sediment quality, chemical bioaccumulation, and biological responses. Results revealed a greater hazard for sites closer to the open sea. In these areas, the combination of sediment characteristics and a higher frequency of salinity and temperature stress could explain the alterations measured at a transcriptional and biomarker level. The findings demonstrate that a QWoE approach that integrates multiple sources of evidence should also include physicochemical conditions in order to better understand the impacts of human activities and other stressors on clam aquaculture productivity.

Natural resources and climate change: A study of the potential impact on Manila clam in the Venice lagoon

A crucial aspect in climate change is to understand how an ecosystem will adapt under different environmental conditions and how it will influence the ecological resources and the connected human activities. In this study, a numerical model reproduces the growth dynamics, dispersion and settlement of clam's larvae in the Venice lagoon. On the basis of the last IPCC scenarios for the years 2050 and 2100, the model simulates the changes in larval settlement, showing how the geographical distribution and, consequently, the nursery area changes over time. Our results indicate that climate change will modify, not only the timing of the settlements (from spring-summer to winter autumn) and the spatial distribution of nursery areas (from central to southern lagoon), but also the absolute quantity of settled larvae in the lagoon. This can strongly affect aquaculture in terms of availability of seed and farming practice. Given that these changes are due to the variations in temperature and circulation, similar processes are likely to happen in other transitional environments all over the world affecting the global aquaculture resources. In this regard, the tool we developed could support local policymakers in the knowledge-based planning and sustainable management of clam aquaculture in vulnerable environments.

An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices

A new R software package, RAC, is presented. RAC allows to simulate the rearing cycle of 4 species, finfish and shellfish, highly important in terms of production in the Mediterranean Sea. The package works both at the scale of the individual and of the farmed population. Mathematical models included in RAC were all validated in previous works, and account for growth and metabolism, based on input data characterizing the forcing functions-water temperature, and food quality/quantity. The package provides a demo dataset of forcings for each species, as well as a typical set of husbandry parameters for Mediterranean conditions. The present work illustrates RAC main features, and its current capabilities/limitations. Three test cases are presented as a proof of concept of RAC applicability, and to demonstrate its potential for integrating different open products nowadays provided by remote sensing and operational oceanography.

3D modeling of phytoplankton seasonal variation and nutrient budget in a southern Mediterranean Lagoon

A 3D coupled physical-biogeochemical model is developed and applied to Bizerte Lagoon (Tunisia), in order to understand and quantitatively assess its hydrobiological functioning and nutrients budget. The biogeochemical module accounts for nitrogen and phosphorus and includes the water column and upper sediment layer. The simulations showed that water circulation and the seasonal patterns of nutrients, phytoplankton and dissolved oxygen were satisfactorily reproduced. Model results indicate that water circulation in the lagoon is driven mainly by tide and wind. Plankton primary production is co-limited by phosphorus and nitrogen, and is highest in the inner part of the lagoon, due to the combined effects of high water residence time and high nutrient inputs from the boundary. However, a sensitivity analysis highlights the importance of exchanges with the Mediterranean Sea in maintaining a high level of productivity. Intensive use of fertilizers in the catchment area has a significant effect on phytoplankton biomass increase.

A comparative analysis of three habitat suitability models for commercial yield estimation of Tapes philippinarum in a North Adriatic coastal lagoon (Sacca di Goro, Italy)

Habitat Suitability (HS) models have been extensively used by conservation planners to estimate the spatial distribution of threatened species and of species of commercial interest. In this work we compare three HS models for the estimation of commercial yield potential and the identification of suitable sites for Tapes philippinarum rearing in the Sacca di Goro lagoon (Italy) on the basis of six environmental factors. The habitat suitability index (HSI) is based on expert opinion while the habitat suitability conditional (HSC) is calibrated on observational data. The habitat suitability mixed (HSM) model is a two-part model combining expert knowledge and regression analysis: the first component of the model uses logistic regression to identify the areas in which clams are likely to be present; the second part applies the same parameter-specific suitability functions of the HSI model only in the areas previously identified as productive by the logistic component. The HS models were validated on an independent data set and estimates of potential yield of the Goro lagoon were compared. The effectiveness of the three approaches is then discussed in terms of predicted yield and identification of suitable sites for farming.

Evidence of genetic damage in grass gobies and mussels from the Venice lagoon

The presence of genetic damage has been investigated in two native species of the Venice lagoon: the common mussel Mytilus galloprovincialis and the grass goby Zosterisessor ophiocephalus. Two sampling campaigns were performed in summer 1998 and 1999. Aromatic-like DNA adducts were analysed in selected tissues of gobies and mussels by using the 32P-postlabelling assay. In 1999, micronuclei and other nuclear abnormalities were additionally scored on gill cells and haemocytes of individual mussels whereas inorganic (As, Cd, Cr, Hg, Ni, Pb, Sn) as well as organic contaminants (polycyclic aromatic hydrocarbons, polychlorinated biphenyls and other chlorinated compounds) were measured in the total mussel pulp. Compared to the lagoon inlet area, gobies and mussels from the industrial district (Marghera) showed significant DNA adduct levels and increased frequencies of cytogenetic alterations (evidence of genetic damage was absent or inconsistent in other sites). The substantial levels of aromatic and chlorinated contaminants detected in mussels from Marghera also support the exposure of native organisms to genotoxic agents.

The seasonal distribution of dissolved inorganic nitrogen and phosphorous in the lagoon of Venice: a numerical analysis

This paper investigates the seasonal evolution of the spatial distributions of dissolved inorganic nitrogen and phosphorus, in relation to the estimation of the N and P loads, which were obtained in the framework of the DRAIN project. Such investigation is carried out by using a 3D reaction-diffusion model which has been calibrated against salinity data and then used for obtaining the most likely scenario of the spatial and seasonal distribution of DIN and DIP. The consequences of different management policies are also discussed, in relation to the current Italian legislation, which sets quality standards for both DIN and DIP in the lagoon of Venice.