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Park HJ, Pichugin Y, Traulsen A. Why is cyclic dominance so rare? eLife 2020; 9:57857. [PMID: 32886604 PMCID: PMC7473768 DOI: 10.7554/elife.57857] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 08/01/2020] [Indexed: 12/19/2022] Open
Abstract
Natural populations can contain multiple types of coexisting individuals. How does natural selection maintain such diversity within and across populations? A popular theoretical basis for the maintenance of diversity is cyclic dominance, illustrated by the rock-paper-scissor game. However, it appears difficult to find cyclic dominance in nature. Why is this the case? Focusing on continuously produced novel mutations, we theoretically addressed the rareness of cyclic dominance. We developed a model of an evolving population and studied the formation of cyclic dominance. Our results showed that the chance for cyclic dominance to emerge is lower when the newly introduced type is similar to existing types compared to the introduction of an unrelated type. This suggests that cyclic dominance is more likely to evolve through the assembly of unrelated types whereas it rarely evolves within a community of similar types.
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Affiliation(s)
- Hye Jin Park
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany.,Asia Pacific Center for Theoretical Physics, Pohang, Republic of Korea
| | - Yuriy Pichugin
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany
| | - Arne Traulsen
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany
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2
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O’Sullivan JD, Knell RJ, Rossberg AG. Metacommunity‐scale biodiversity regulation and the self‐organised emergence of macroecological patterns. Ecol Lett 2019; 22:1428-1438. [DOI: 10.1111/ele.13294] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Revised: 01/21/2019] [Accepted: 05/05/2019] [Indexed: 01/07/2023]
Affiliation(s)
- Jacob D. O’Sullivan
- School of Biological and Chemical Sciences Queen Mary University of London Mile End Road LondonE1 4NS UK
| | - Robert J. Knell
- School of Biological and Chemical Sciences Queen Mary University of London Mile End Road LondonE1 4NS UK
| | - Axel G. Rossberg
- School of Biological and Chemical Sciences Queen Mary University of London Mile End Road LondonE1 4NS UK
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3
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Harmon LJ, Andreazzi CS, Débarre F, Drury J, Goldberg EE, Martins AB, Melián CJ, Narwani A, Nuismer SL, Pennell MW, Rudman SM, Seehausen O, Silvestro D, Weber M, Matthews B. Detecting the macroevolutionary signal of species interactions. J Evol Biol 2019; 32:769-782. [DOI: 10.1111/jeb.13477] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Revised: 03/26/2019] [Accepted: 04/04/2019] [Indexed: 02/04/2023]
Affiliation(s)
- Luke J. Harmon
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry Eawag Kastanienbaum Switzerland
- Department of Biological Sciences University of Idaho Moscow Idaho
| | | | - Florence Débarre
- Sorbonne Université, UPMC Univ Paris 06, CNRS, IRD, INRA, Université Paris Diderot, Institute of Ecology and Environmental Sciences (UMR7618) Paris France
| | | | - Emma E. Goldberg
- Department of Ecology, Evolution and Behavior University of Minnesota Saint Paul Minnesota
| | - Ayana B. Martins
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry Eawag Kastanienbaum Switzerland
- Instituto de Física ‘Gleb Wataghin’ Universidade Estadual de Campinas Campinas Brazil
| | - Carlos J. Melián
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry Eawag Kastanienbaum Switzerland
| | - Anita Narwani
- Department of Aquatic Ecology Swiss Federal Institute of Aquatic Science and Technology Eawag Dübendorf Switzerland
| | - Scott L. Nuismer
- Department of Biological Sciences University of Idaho Moscow Idaho
| | - Matthew W. Pennell
- Department of Zoology and Biodiversity Research Centre University of British Columbia Vancouver British Columbia
| | - Seth M. Rudman
- Department of Biology University of Pennsylvania Philadelphia Pennsylvania
| | - Ole Seehausen
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry Eawag Kastanienbaum Switzerland
- Institute of Ecology and Evolution University of Bern Bern Switzerland
| | - Daniele Silvestro
- Department of Biological and Environmental Sciences Global Gothenburg Biodiversity Centre University of Gothenburg Gothenburg Sweden
| | - Marjorie Weber
- Department of Plant Biology & Program in Ecology, Evolution, and Behavior Michigan State University East Lansing Michigan
| | - Blake Matthews
- Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry Eawag Kastanienbaum Switzerland
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution University of Bern Bern Switzerland
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4
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Park HJ, Pichugin Y, Huang W, Traulsen A. Population size changes and extinction risk of populations driven by mutant interactors. Phys Rev E 2019; 99:022305. [PMID: 30934279 DOI: 10.1103/physreve.99.022305] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Indexed: 11/07/2022]
Abstract
Spontaneous random mutations are an important source of variation in populations. Many evolutionary models consider mutants with a fixed fitness, chosen from a fitness distribution without considering microscopic interactions among the residents and mutants. Here, we go beyond this and consider "mutant interactors," which lead to new interactions between the residents and invading mutants that can affect the population size and the extinction risk of populations. We model microscopic interactions between individuals by using a dynamic interaction matrix, the dimension of which increases with the emergence of a new mutant and decreases with extinction. The new interaction parameters of the mutant follow a probability distribution around the payoff entries of its ancestor. These new interactions can drive the population away from the previous equilibrium and lead to changes in the population size. Thus, the population size is an evolving property rather than an externally controlled variable. We calculate the average population size of our stochastic system over time and quantify the extinction risk of the population by the mean time to extinction.
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Affiliation(s)
- Hye Jin Park
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, 24306 Plön, Germany
| | - Yuriy Pichugin
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, 24306 Plön, Germany
| | - Weini Huang
- Complex Systems and Networks Research Group, School of Mathematical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, United Kingdom.,Group of Theoretical Biology, The State Key Laboratory of Biocontrol, School of Life Science, Sun Yat-sen University, Guangzhou 510060, China
| | - Arne Traulsen
- Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, 24306 Plön, Germany
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Minoarivelo HO, Hui C. Alternative assembly processes from trait-mediated co-evolution in mutualistic communities. J Theor Biol 2018; 454:146-153. [PMID: 29885411 DOI: 10.1016/j.jtbi.2018.06.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Revised: 04/25/2018] [Accepted: 06/04/2018] [Indexed: 11/30/2022]
Abstract
Ecological and evolutionary dynamics observed in mutualistic communities can be shaped by several mechanisms, including ecological interactions and their co-evolutionary consequences. Here we explore how intra and interspecific competition, together with mutualistic interactions, can affect community assembly through their effects on adaptive diversification and the emergence of biodiversity. To capture both ecological and evolutionary processes simultaneously, we used the adaptive dynamics approach based on a Lotka-Volterra framework and simulated the ecological dynamics of populations as well as the evolutionary dynamics of phenotypic traits. Depending on the initial trait values, two possible alternative evolutionary regimes emerged: traits evolve towards either optimal utilization of environmental resources or maximizing the benefits from mutualistic interactions. Diversification and overall biodiversity are mostly driven by frequency-dependent competition, while mutualism plays an important role in enhancing ecosystem productivity and evolutionary stability. Because different initial trait values in a community can lead to alternative evolutionary regimes, species loss and biological invasions could not only alter ecological dynamics but also push the system onto an alternative successional climax or evolutionary end point. It thus becomes essential to clarify the past evolutionary dynamics so as to draw conclusions on key community assembly processes.
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Affiliation(s)
- Henintsoa O Minoarivelo
- Theoretical Ecology Group, Department of Mathematical Sciences, Stellenbosch University, Matieland 7602, South Africa; Centre of Excellence in Mathematical and Statistical Sciences, Wits University, Gauteng 2050, South Africa.
| | - Cang Hui
- Theoretical Ecology Group, Department of Mathematical Sciences, Stellenbosch University, Matieland 7602, South Africa; Mathematical and Physical BioSciences, African Institute for Mathematical Sciences, Muizenberg 7945, South Africa
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6
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Farahpour F, Saeedghalati M, Brauer VS, Hoffmann D. Trade-off shapes diversity in eco-evolutionary dynamics. eLife 2018; 7:e36273. [PMID: 30117415 PMCID: PMC6126925 DOI: 10.7554/elife.36273] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Accepted: 08/03/2018] [Indexed: 12/22/2022] Open
Abstract
We introduce an Interaction- and Trade-off-based Eco-Evolutionary Model (ITEEM), in which species are competing in a well-mixed system, and their evolution in interaction trait space is subject to a life-history trade-off between replication rate and competitive ability. We demonstrate that the shape of the trade-off has a fundamental impact on eco-evolutionary dynamics, as it imposes four phases of diversity, including a sharp phase transition. Despite its minimalism, ITEEM produces a remarkable range of patterns of eco-evolutionary dynamics that are observed in experimental and natural systems. Most notably we find self-organization towards structured communities with high and sustained diversity, in which competing species form interaction cycles similar to rock-paper-scissors games.
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Affiliation(s)
- Farnoush Farahpour
- Bioinformatics and Computational BiophysicsUniversity of Duisburg-EssenEssenGermany
| | | | | | - Daniel Hoffmann
- Bioinformatics and Computational BiophysicsUniversity of Duisburg-EssenEssenGermany
- Center for Computational Sciences and SimulationUniversity of Duisburg-EssenEssenGermany
- Center for Medical BiotechnologyUniversity of Duisburg-EssenEssenGermany
- Center for Water and Environmental ResearchUniversity of Duisburg-EssenEssenGermany
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7
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Shtilerman E, Kessler DA, Shnerb NM. Emergence of structured communities through evolutionary dynamics. J Theor Biol 2015; 383:138-44. [PMID: 26231415 DOI: 10.1016/j.jtbi.2015.07.020] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 07/09/2015] [Accepted: 07/16/2015] [Indexed: 11/17/2022]
Abstract
Species-rich communities, in which many competing species coexist in a single trophic level, are quite frequent in nature, but pose a formidable theoretical challenge. In particular, it is known that complex competitive systems become unstable and unfeasible when the number of species is large. Recently, many studies have attributed the stability of natural communities to the structure of the interspecific interaction network, yet the nature of such structures and the underlying mechanisms responsible for them remain open questions. Here we introduce an evolutionary model, based on the generic Lotka-Volterra competitive framework, from which a stable, structured, diverse community emerges spontaneously. The modular structure of the competition matrix reflects the phylogeny of the community, in agreement with the hierarchial taxonomic classification. Closely related species tend to have stronger niche overlap and weaker fitness differences, as opposed to pairs of species from different modules. The competitive-relatedness hypothesis and the idea of emergent neutrality are discussed in the context of this evolutionary model.
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Affiliation(s)
- Elad Shtilerman
- Porter School of Environmental Studies, Tel Aviv University, Ramat Aviv IL6997801, Israel.
| | - David A Kessler
- Department of Physics, Bar-Ilan University, Ramat-Gan IL5290002, Israel.
| | - Nadav M Shnerb
- Department of Physics, Bar-Ilan University, Ramat-Gan IL5290002, Israel.
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8
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Allhoff KT, Drossel B. When do evolutionary food web models generate complex networks? J Theor Biol 2013; 334:122-9. [PMID: 23778160 DOI: 10.1016/j.jtbi.2013.06.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Revised: 02/13/2013] [Accepted: 06/07/2013] [Indexed: 10/26/2022]
Abstract
Evolutionary foodweb models are used to build food webs by the repeated addition of new species. Population dynamics leads to the extinction or establishment of a newly added species, and possibly to the extinction of other species. The food web structure that emerges after some time is a highly nontrivial result of the evolutionary and dynamical rules. We investigate the evolutionary food web model introduced by Loeuille and Loreau (2005), which characterizes species by their body mass as the only evolving trait. Our goal is to find the reasons behind the model's remarkable robustness and its capability to generate various and stable networks. In contrast to other evolutionary food web models, this model requires neither adaptive foraging nor allometric scaling of metabolic rates with body mass in order to produce complex networks that do not eventually collapse to trivial structures. Our study shows that this is essentially due to the fact that the difference in niche value between predator and prey as well as the feeding range are constrained so that they remain within narrow limits under evolution. Furthermore, competition between similar species is sufficiently strong, so that a trophic level can accommodate several species. We discuss the implications of these findings and argue that the conditions that stabilize other evolutionary food web models have similar effects because they also prevent the occurrence of extreme specialists or extreme generalists that have in general a higher fitness than species with a moderate niche width.
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Affiliation(s)
- Korinna T Allhoff
- Institute of Condensed Matter Physics, Darmstadt University of Technology, Hochschulstraße 6, 64283 Darmstadt, Germany.
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10
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11
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12
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13
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The relationship between the duration of food web evolution and the vulnerability to biological invasion. ECOLOGICAL COMPLEXITY 2008. [DOI: 10.1016/j.ecocom.2008.02.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Lugo CA, McKane AJ. The characteristics of species in an evolutionary food web model. J Theor Biol 2008; 252:649-61. [DOI: 10.1016/j.jtbi.2008.02.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2007] [Revised: 02/20/2008] [Accepted: 02/20/2008] [Indexed: 10/22/2022]
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15
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Lugo CA, McKane AJ. The robustness of the Webworld model to changes in its structure. ECOLOGICAL COMPLEXITY 2008. [DOI: 10.1016/j.ecocom.2007.06.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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16
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17
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Rossberg A, Matsuda H, Amemiya T, Itoh K. An explanatory model for food-web structure and evolution. ECOLOGICAL COMPLEXITY 2005. [DOI: 10.1016/j.ecocom.2005.04.007] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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18
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Rossberg AG, Matsuda H, Amemiya T, Itoh K. Some properties of the speciation model for food-web structure-mechanisms for degree distributions and intervality. J Theor Biol 2005; 238:401-15. [PMID: 16045940 DOI: 10.1016/j.jtbi.2005.05.025] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2005] [Revised: 05/26/2005] [Accepted: 05/31/2005] [Indexed: 10/25/2022]
Abstract
We present a mathematical analysis of the speciation model for food-web structure, which had in previous work been shown to yield a good description of empirical data of food-web topology. The degree distributions of the network are derived. Properties of the speciation model are compared to those of other models that successfully describe empirical data. It is argued that the speciation model unifies the underlying ideas of previous theories. In particular, it offers a mechanistic explanation for the success of the niche model of Williams and Martinez and the frequent observation of intervality in empirical food webs.
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Affiliation(s)
- A G Rossberg
- Yokohama National University, Graduate School of Environment and Information Sciences, Yokohama, Kanagawa 240-8501, Japan.
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Ito HC, Ikegami T. Food-web formation with recursive evolutionary branching. J Theor Biol 2005; 238:1-10. [PMID: 15996683 DOI: 10.1016/j.jtbi.2005.05.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2004] [Revised: 04/20/2005] [Accepted: 05/02/2005] [Indexed: 11/22/2022]
Abstract
A reaction-diffusion model describing the evolutionary dynamics of a food-web was constructed. In this model, predator-prey relationships among organisms were determined by their position in a two-dimensional phenotype space defined by two traits: as prey and as predator. The mutation process is expressed with a diffusion process of biomass in the phenotype space. Numerical simulation of this model showed co-evolutionary dynamics of isolated phenotypic clusters, including various types of evolutionary branching, which were classified into branching as prey, branching as predators, and co-evolutionary branching of both prey and predators. A complex food-web develops with recursive evolutionary branching from a single phenotypic cluster. Biodiversity peaks at the medium strength of the predator-prey interaction, where the food-web is maintained at medium biomass by a balanced frequency between evolutionary branching and extinction.
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Affiliation(s)
- Hiroshi C Ito
- The Graduate School of Arts and Sciences, University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.
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Semovski S, Verheyen E, Sherbakov D. Simulating the evolution of neutrally evolving sequences in a population under environmental changes. Ecol Modell 2004. [DOI: 10.1016/j.ecolmodel.2003.07.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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