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Bonugli-Santos RC, dos Santos Vasconcelos MR, Passarini MRZ, Vieira GAL, Lopes VCP, Mainardi PH, dos Santos JA, de Azevedo Duarte L, Otero IVR, da Silva Yoshida AM, Feitosa VA, Pessoa A, Sette LD. Marine-derived fungi: diversity of enzymes and biotechnological applications. Front Microbiol 2015; 6:269. [PMID: 25914680 PMCID: PMC4392690 DOI: 10.3389/fmicb.2015.00269] [Citation(s) in RCA: 89] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 03/18/2015] [Indexed: 01/19/2023] Open
Abstract
The ocean is considered to be a great reservoir of biodiversity. Microbial communities in marine environments are ecologically relevant as intermediaries of energy, and play an important role in nutrient regeneration cycles as decomposers of dead and decaying organic matter. In this sense, marine-derived fungi can be considered as a source of enzymes of industrial and/or environmental interest. Fungal strains isolated from different substrates, such as invertebrates, decaying wood, seawater, sediments, and mangrove detritus, have been reported to be producers of hydrolytic and/or oxidative enzymes, with alginate lyase, amylase, cellulase, chitinase, glucosidase, inulinase, keratinase, ligninase, lipase, nuclease, phytase, protease, and xylanase being among the enzymes produced by fungi of marine origin. These enzymes present temperature and pH optima ranging from 35 to 70(∘)C, and 3.0 to 11.0, respectively. High-level production in bioreactors is mainly performed using submerged-state fermentation. Certain marine-derived fungal strains present enzymes with alkaline and cold-activity characteristics, and salinity is considered an important condition in screening and production processes. The adaptability of marine-derived fungi to oceanic conditions can be considered an attractive point in the field of fungal marine biotechnology. In this review, we focus on the advances in discovering enzymes from marine-derived fungi and their biotechnological relevance.
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Affiliation(s)
- Rafaella C. Bonugli-Santos
- Instituto Latino Americano de Ciências da Vida e da Natureza, Centro Interdisciplinar de Ciências da Vida, Universidade Federal da Integração Latino-AmericanaParaná, Brazil
| | - Maria R. dos Santos Vasconcelos
- Divisão de Recursos Microbianos, Centro Pluridisciplinar de Pesquisas Químicas, Biológicas e Agrícolas, Universidade Estadual de CampinasPaulínia, Brazil
| | - Michel R. Z. Passarini
- Divisão de Recursos Microbianos, Centro Pluridisciplinar de Pesquisas Químicas, Biológicas e Agrícolas, Universidade Estadual de CampinasPaulínia, Brazil
| | - Gabriela A. L. Vieira
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Viviane C. P. Lopes
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Pedro H. Mainardi
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Juliana A. dos Santos
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Lidia de Azevedo Duarte
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Igor V. R. Otero
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Aline M. da Silva Yoshida
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
| | - Valker A. Feitosa
- Departamento de Tecnologia Bioquímico-Farmacêutica, Faculdade de Ciências Farmacêuticas, Universidade de São PauloSão Paulo, Brazil
| | - Adalberto Pessoa
- Departamento de Tecnologia Bioquímico-Farmacêutica, Faculdade de Ciências Farmacêuticas, Universidade de São PauloSão Paulo, Brazil
| | - Lara D. Sette
- Divisão de Recursos Microbianos, Centro Pluridisciplinar de Pesquisas Químicas, Biológicas e Agrícolas, Universidade Estadual de CampinasPaulínia, Brazil
- Laboratório de Micologia Ambiental e Industrial, Departamento de Bioquímica e Microbiologia, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita FilhoRio Claro, Brazil
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Fujii R, Kitaoka M, Hayashi K. Error-prone rolling circle amplification greatly simplifies random mutagenesis. Methods Mol Biol 2014; 1179:23-29. [PMID: 25055768 DOI: 10.1007/978-1-4939-1053-3_2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We describe a simple and easy protocol to introduce random mutations into plasmid DNA: error-prone rolling circle amplification. A template plasmid is amplified via rolling circle amplification with decreased fidelity in the presence of MnCl2 and is used to transform a host strain resulting in a mutant library with several random point mutations per kilobase through the entire plasmid. The primary advantage of this method is its simplicity. This protocol does not require the design of specific primers or thermal cycling. The reaction mixture can be used for direct transformation of a host strain. This method allows rapid preparation of randomly mutated plasmid libraries, enabling wider application of random mutagenesis.
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Affiliation(s)
- Ryota Fujii
- Synthetic Chemicals Laboratory, Mitsui Chemicals, Inc., 580-32 Nagaura, Sodegaura, 299-0265, Japan
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Zhou Y, Jin Q, Gao Z, Guo H, Zhang H, Zhou X. Asymmetric organic carbonate synthesis catalyzed by an enzyme with dimethyl carbonate: a fruitful sustainable alliance. RSC Adv 2014. [DOI: 10.1039/c3ra43698e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Abstract
Diverse engineering strategies have been developed to create enzymes with novel catalytic activities. Among these, computational approaches hold particular promise. Enzymes have been computationally designed to promote several nonbiological reactions, including a Diels-Alder cycloaddition, proton transfer, multistep retroaldol transformations, and metal-dependent hydrolysis of phosphotriesters. Although their efficiencies (kcat/KM = 0.1-100 M(-1) s(-1)) are typically low compared with those of the best natural enzymes (10(6)-10(8) M(-1) s(-1)), these catalysts are excellent starting points for laboratory evolution. This review surveys recent progress in combining computational and evolutionary approaches to enzyme design, together with insights into enzyme function gained from studies of the engineered catalysts.
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Affiliation(s)
- Donald Hilvert
- Laboratory of Organic Chemistry, ETH Zürich, 8093 Zürich, Switzerland.
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Sakulsombat M, Zhang Y, Ramström O. Dynamic Asymmetric Hemithioacetal Transformation by Lipase-Catalyzed γ-Lactonization: In Situ Tandem Formation of 1,3-Oxathiolan-5-one Derivatives. Chemistry 2012; 18:6129-32. [DOI: 10.1002/chem.201102139] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2011] [Revised: 10/27/2011] [Indexed: 11/06/2022]
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Chien W, Liang C, Yu C, Lin JH, Wu H, Lin C. Glucose 1‐Phosphate Thymidylyltransferase in the Synthesis of Uridine 5′‐Diphosphate Galactose and its Application in the Synthesis ofN‐Acetyllactosamine. Adv Synth Catal 2012. [DOI: 10.1002/adsc.201100402] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Wei‐Ting Chien
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Chien‐Fu Liang
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Ching‐Ching Yu
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Jian‐ Hong Lin
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Haung‐Ting Wu
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
| | - Chun‐Cheng Lin
- Department of Chemistry, National Tsing Hua University, 101 Sec. 2, Kuang Fu Rd., Hsinchu 30013, Taiwan, Republic of China, Fax: +(886)‐3‐571‐1082; phone: (+886)‐3‐575‐3147
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Choi SH, Kim HS, Lee EY. Multiple sequence alignment-inspired mutagenesis of marine epoxide hydrolase of Mugil cephalus for enhancing enantioselective hydrolytic activity. J IND ENG CHEM 2012. [DOI: 10.1016/j.jiec.2011.11.085] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Development and characterization of recombinant whole cells expressing the soluble epoxide hydrolase of Danio rerio and its variant for enantioselective resolution of racemic styrene oxides. J IND ENG CHEM 2012. [DOI: 10.1016/j.jiec.2011.11.110] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Lipase-catalyzed enantioselective resolution of (R,S)-N-2-methylalkanoyl-3-(2-pyridyl)pyrazoles in organic solvents. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.molcatb.2010.11.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Sakulsombat M, Vongvilai P, Ramström O. In situ evaluation of lipase performances through dynamic asymmetric cyanohydrin resolution. Org Biomol Chem 2011; 9:1112-7. [PMID: 21170452 DOI: 10.1039/c0ob00759e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A dynamic resolution process based on multiple reversible cyanohydrin formation coupled to lipase-mediated transesterification is demonstrated. The resulting process resulted in the efficient evaluation of complex lipase performances in asymmetric cyanohydrin acylate synthesis. Dynamic systems were generated and resolved in situ, and the effects of the reaction conditions could be directly monitored for the overall system. By this concept, the enzyme activity, chemo- and stereoselectivity for all involved substrates could be simultaneously evaluated.
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Affiliation(s)
- Morakot Sakulsombat
- Department of Chemistry, KTH-Royal Institute of Technology, Teknikringen 30, S-10044, Stockholm, Sweden
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Wang PY, Wu CH, Ciou JF, Wu AC, Tsai SW. Kinetic resolution of (R,S)-pyrazolides containing substituents in the leaving pyrazole for increased lipase enantioselectivity. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.molcatb.2010.04.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Reetz MT. Gerichtete Evolution stereoselektiver Enzyme: Eine ergiebige Katalysator‐Quelle für asymmetrische Reaktionen. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201000826] [Citation(s) in RCA: 128] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Manfred T. Reetz
- Max‐Planck‐Institut für Kohlenforschung, Kaiser‐Wilhelm‐Platz 1, 45470 Mülheim an der Ruhr (Deutschland), Fax: (+49) 208‐306‐2985 http://www.mpi‐muelheim.mpg.de/mpikofo_home.html
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Reetz MT. Laboratory Evolution of Stereoselective Enzymes: A Prolific Source of Catalysts for Asymmetric Reactions. Angew Chem Int Ed Engl 2010; 50:138-74. [DOI: 10.1002/anie.201000826] [Citation(s) in RCA: 441] [Impact Index Per Article: 31.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Manfred T. Reetz
- Max‐Planck‐Institut für Kohlenforschung, Kaiser‐Wilhelm‐Platz 1, 45470 Mülheim an der Ruhr (Germany), Fax: (+49) 208‐306‐2985 http://www.mpi‐muelheim.mpg.de/mpikofo_home.html
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Wu AC, Wang PY, Lin YS, Kao MF, Chen JR, Ciou JF, Tsai SW. Improvements of enzyme activity and enantioselectivity in lipase-catalyzed alcoholysis of (R,S)-azolides. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.molcatb.2009.11.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Güven G, Prodanovic R, Schwaneberg U. Protein Engineering - An Option for Enzymatic Biofuel Cell Design. ELECTROANAL 2010. [DOI: 10.1002/elan.200980017] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Wang PY, Tsai SW. Modification of enzyme surface negative charges via covalent immobilization for tailoring the activity and enantioselectivity. J Taiwan Inst Chem Eng 2009. [DOI: 10.1016/j.jtice.2008.12.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Bódalo A, Bastida J, Máximo M, Montiel M, Murcia M, Ortega S. Influence of the operating conditions on lipase-catalysed synthesis of ricinoleic acid estolides in solvent-free systems. Biochem Eng J 2009. [DOI: 10.1016/j.bej.2008.12.007] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Gadler P, Reiter TC, Hoelsch K, Weuster-Botz D, Faber K. Enantiocomplementary inverting sec-alkylsulfatase activity in cyano- and thio-bacteria Synechococcus and Paracoccus spp.: selectivity enhancement by medium engineering. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.tetasy.2009.01.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Affiliation(s)
- Christian Jäckel
- Laboratory of Organic Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland; ,
| | - Peter Kast
- Laboratory of Organic Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland; ,
| | - Donald Hilvert
- Laboratory of Organic Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland; ,
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Xu JM, Zhang F, Wu Q, Zhang QY, Lin XF. Hydrolase-catalyzed Michael addition of 1,3-dicarbonyl compounds to α,β-unsaturated compounds in organic solvent. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.molcatb.2007.08.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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