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Dodge TO, Kim BY, Baczenas JJ, Banerjee SM, Gunn TR, Donny AE, Given LA, Rice AR, Haase Cox SK, Weinstein ML, Cross R, Moran BM, Haber K, Haghani NB, Machin Kairuz JA, Gellert HR, Du K, Aguillon SM, Tudor MS, Gutiérrez-Rodríguez C, Rios-Cardenas O, Morris MR, Schartl M, Powell DL, Schumer M. Structural genomic variation and behavioral interactions underpin a balanced sexual mimicry polymorphism. Curr Biol 2024; 34:4662-4676.e9. [PMID: 39326413 DOI: 10.1016/j.cub.2024.08.053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/15/2024] [Accepted: 08/29/2024] [Indexed: 09/28/2024]
Abstract
How phenotypic diversity originates and persists within populations are classic puzzles in evolutionary biology. While balanced polymorphisms segregate within many species, it remains rare for both the genetic basis and the selective forces to be known, leading to an incomplete understanding of many classes of traits under balancing selection. Here, we uncover the genetic architecture of a balanced sexual mimicry polymorphism and identify behavioral mechanisms that may be involved in its maintenance in the swordtail fish Xiphophorus birchmanni. We find that ∼40% of X. birchmanni males develop a "false gravid spot," a melanic pigmentation pattern that mimics the "pregnancy spot" associated with sexual maturity in female live-bearing fish. Using genome-wide association mapping, we detect a single intergenic region associated with variation in the false gravid spot phenotype, which is upstream of kitlga, a melanophore patterning gene. By performing long-read sequencing within and across populations, we identify complex structural rearrangements between alternate alleles at this locus. The false gravid spot haplotype drives increased allele-specific expression of kitlga, which provides a mechanistic explanation for the increased melanophore abundance that causes the spot. By studying social interactions in the laboratory and in nature, we find that males with the false gravid spot experience less aggression; however, they also receive increased attention from other males and are disdained by females. These behavioral interactions may contribute to the maintenance of this phenotypic polymorphism in natural populations. We speculate that structural variants affecting gene regulation may be an underappreciated driver of balanced polymorphisms across diverse species.
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Affiliation(s)
- Tristram O Dodge
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México.
| | - Bernard Y Kim
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - John J Baczenas
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - Shreya M Banerjee
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México; Center for Population Biology and Department of Evolution and Ecology, University of California, Davis, 475 Storer Mall, Davis, CA 95616, USA
| | - Theresa R Gunn
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México
| | - Alex E Donny
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México
| | - Lyle A Given
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - Andreas R Rice
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - Sophia K Haase Cox
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - M Luke Weinstein
- Department of Biological Sciences, Ohio University, 7 Depot St., Athens, OH 45701, USA
| | - Ryan Cross
- Department of Biological Sciences, Ohio University, 7 Depot St., Athens, OH 45701, USA
| | - Benjamin M Moran
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México
| | - Kate Haber
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Berkeley High School, 1980 Allston Way, Berkeley, CA 94704, USA
| | - Nadia B Haghani
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México
| | | | - Hannah R Gellert
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA
| | - Kang Du
- Xiphophorus Genetic Stock Center, Texas State University, San Marcos, 601 University Drive, San Marcos, TX 78666, USA
| | - Stepfanie M Aguillon
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México; Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 612 Charles E. Young Drive South, Los Angeles, CA 90095, USA
| | - M Scarlett Tudor
- Cooperative Extension and Aquaculture Research Institute, University of Maine, 33 Salmon Farm Road, Franklin, ME 04634, USA
| | - Carla Gutiérrez-Rodríguez
- Red de Biología Evolutiva, Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, Col. El Haya, Xalapa, Veracruz 91073, México
| | - Oscar Rios-Cardenas
- Red de Biología Evolutiva, Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, Col. El Haya, Xalapa, Veracruz 91073, México
| | - Molly R Morris
- Department of Biological Sciences, Ohio University, 7 Depot St., Athens, OH 45701, USA
| | - Manfred Schartl
- Xiphophorus Genetic Stock Center, Texas State University, San Marcos, 601 University Drive, San Marcos, TX 78666, USA; Developmental Biochemistry, Biocenter, University of Würzburg, Am Hubland, 97074 Wuerzburg, Germany
| | - Daniel L Powell
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México; Department of Biology, Louisiana State University, 202 Life Science Building, Baton Rouge, LA 70803, USA
| | - Molly Schumer
- Department of Biology, Stanford University, 327 Campus Drive, Stanford, CA 94305, USA; Centro de Investigaciones Científicas de las Huastecas "Aguazarca" A.C., 16 de Septiembre, 392 Barrio Aguazarca, Calnali, Hidalgo 43240, México; Howard Hughes Medical Institute, 327 Campus Drive, Stanford, CA 94305, USA.
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