Distribution of Sporobolomyces (Kluyver et van Niel) Genus in the Western Coast of Baja California Sur, Mexico

Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna

Investigations of the diversity of culturable yeasts at deep-sea hydrothermal sites have suggested possible interactions with endemic fauna. Samples were collected during various oceanographic cruises at the Mid-Atlantic Ridge, South Pacific Basins and East Pacific Rise. Cultures of 32 isolates, mostly associated with animals, were collected. Phylogenetic analyses of 26S rRNA gene sequences revealed that the yeasts belonged to Ascomycota and Basidiomycota phyla, with the identification of several genera: Rhodotorula, Rhodosporidium, Candida, Debaryomyces and Cryptococcus. Those genera are usually isolated from deep-sea environments. To our knowledge, this is the first report of yeasts associated with deep-sea hydrothermal animals.

Cu,Zn superoxide dismutase in Rhodotorula and Udeniomyces spp. isolated from sea water: cloning and sequencing the encoding region

The gene encoding the copper-zinc superoxide dismutase enzyme (SODC or Cu,Zn-SOD) has been cloned from several species of higher eukaryotes, but superoxide dismutase genes from moulds and yeast have not been studied extensively. Only 15 nucleotide sequences have been reported in the SwissProt, EMBL and GenBank data libraries. In general the presence of Cu,Zn-SOD in cytosol, as well as Mn-SOD in the mitochondrial matrix of yeast, has been accepted. The absence of Cu,Zn-SOD in a pigmented yeast has been accepted as a general rule. Some authors suggest that the absence of Cu,Zn-SOD in pigmented yeast is complemented by the presence of carotenoproteins that act as an extra mitochondrial antioxidant. In this report, we found that the absence of SODC is not a rule for pigmented yeast: Udeniomyces puniceus expresses an active SODC which responds to Cu(2+) induction, as has been reported previously for non-pigmented yeast. The encoding region of the sod1 gene was cloned from three species of pigmented marine yeast thorough genomic DNA PCR amplification. Fragments of 485-487 nucleotides were obtained, which contain information for theoretical products of 153-154 amino acids. In Rhodotorula mucilaginosa the deduced amino acid sequence shows that insertion of three bases (C(112), A(149) and C(166)) generates a stop codon at position 123 (TGA). For Rhodotorula graminis a single change (T for A) generates a stop codon at position 298. For both species, this non-transcription of encoding sequence correlates with the absence of peptides or active proteins in cell homogenates. For U. puniceus, the cloned nucleotide sequence contains all necessary information to produce a functional protein, which correlates with activity detected in cell homogenates, both under normal conditions and by copper induction experiments. Finally, we clearly showed that the key factor in protection against oxidative stress on pigmented yeast is related not only to the presence of protective pigments but also to their amounts and spectra, as well as the presence and activity of SODC.

Expanding world of ballistosporous yeasts: Distribution in the phyllosphere, systematics and phylogeny

Ecological and systematic aspects of ballistosporous yeasts inhabiting the phyllosphere of the Asia-Pacific region were reviewed in the light of recent advances. In the past 20 years, the extensive isolation studies of ballistosporous yeasts were carried out in the Asia-Pacific region, and the following new species were found in the phyllosphere of the main island of Japan, of the Ogasawara Islands in the Pacific Ocean, and of Thailand, New Zealand, and the Yunnan Province of China: Bensingtonia ingoldii, B. intermedia, B. miscanthi, B. naganoensis, B. musae, B. sakaguchii, B. subrosea, B. thailandica, and B. yamatoana; Bullera boninensis, B. coprosmaensis, B. hannae, B. huiaensis, B. miyagiana, B. mrakii, B. oryzae, B. penniseticola, B. pseudoalba, B. schimicola, B. sinensis, B. unica, B. variabilis, and B. waltii; Kockovaella imperatae, K. machilophila, K. phaffii, K. sacchari, K. schimae, and K. thailandica; Sporobolomyces blumeae, S. coprosmae, S. coprosmicola, S. dimmenae, S. draycophyllus, S. falcatus, S. griseoflavus, S. inositophilus, S. lactophilus, S. linderae, S. novazealandicus, S. nylandii, S. oryzicola, S. poonsookiae, S. ruber, S. sasicola, S. subbrunneus, S. taupoensis, S. vermiculatus, S. xanthus, and S. yunnanensis; and Udeniomyces megalosporus. Yeast species containing Q-10(H(2)), a monohydrated ubiquinone, have long been considered to be rare yeasts; however, these yeasts were proved to be common in the tropical and subtropical phyllosphere of Asia. The chemotaxonomic and molecular phylogenetic studies based on the sequence analysis of 18S rDNA revealed the heterogeneity of ballistosporous yeasts, which comprised species with polyphyletic phylogenetic origins. A new phylogenetic cluster, Subbrunneus, was newly found in the class Urediniomycetes as the fifth phylogenetical cluster of this class, based on the analysis of 18S rDNA sequences. The Subbrunneus cluster comprises four ballistosporous yeast species found in the phyllosphere of Japan and New Zealand. The future perspectives of basidiomycetous yeast systematics are discussed.