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Pérez-Sancho M, Vela AI, Horcajo P, Ugarte-Ruiz M, Domínguez L, Fernández-Garayzábal JF, de la Fuente R. Rapid differentiation of Staphylococcus aureus subspecies based on MALDI-TOF MS profiles. J Vet Diagn Invest 2018; 30:813-820. [PMID: 30280650 DOI: 10.1177/1040638718805537] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Staphylococcus aureus encompasses 2 subspecies ( aureus and anaerobius) with significant differences in their epidemiology and pathogenicity. We evaluated the suitability of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for the rapid identification of both subspecies using a panel of 52 S. aureus isolates (30 subsp. anaerobius and 22 subsp. aureus) recovered from different origins, countries, and years. The on-board library identification system correctly identified 42 of 52 (81%) S. aureus isolates at the species level with score values >2.0. Limited performance was observed for differentiation of S. aureus subspecies (particularly subsp. anaerobius). Visual inspection of MALDI-TOF MS profiles identified 5 subspecies-specific mass peaks ( m/ z 3430 and 6861 in S. aureus subsp. anaerobius, and m/ z 4046, 6890, and 8093 in S. aureus subsp. aureus) with 100% sensitivity and specificity values, which is potentially useful for differentiating these subspecies. The suitability of 3 models, Genetic Analysis (GA), Quick Classifier (QC), and Supervised Neural Network, for automatic identification of both subspecies was evaluated using the Recognition Capability (RC) and Cross Validation (CV) values provided by the on-board ClinProTools software. The GA and QC models reached RC and CV values of 100%. Both models were externally validated using a panel of 26 S. aureus isolates of both subspecies, with both models correctly classifying all isolates of both subspecies. MALDI-TOF MS coupled with ClinProTools software represents a rapid and simple approach for S. aureus subspecies discrimination.
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Affiliation(s)
- Marta Pérez-Sancho
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - Ana I Vela
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - Pilar Horcajo
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - María Ugarte-Ruiz
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - Lucas Domínguez
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - José F Fernández-Garayzábal
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
| | - Ricardo de la Fuente
- VISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.,Animal Health Department, Veterinary Faculty (Vela, Horcajo, Fernández-Garayzábal, Domínguez, de la Fuente), Complutense University, Madrid, Spain
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2
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Lagos J, Alarcón P, Benadof D, Ulloa S, Fasce R, Tognarelli J, Aguayo C, Araya P, Parra B, Olivares B, Hormazábal JC, Fernández J. Novel nonsense mutation in the katA gene of a catalase-negative Staphylococcus aureus strain. Braz J Microbiol 2016; 47:177-80. [PMID: 26887242 PMCID: PMC4822749 DOI: 10.1016/j.bjm.2015.11.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Accepted: 08/08/2015] [Indexed: 11/18/2022] Open
Abstract
We report the first description of a rare catalase-negative strain of Staphylococcus aureus in Chile. This new variant was isolated from blood and synovial tissue samples of a pediatric patient. Sequencing analysis revealed that this catalase-negative strain is related to ST10 strain, which has earlier been described in relation to S. aureus carriers. Interestingly, sequence analysis of the catalase gene katA revealed presence of a novel nonsense mutation that causes premature translational truncation of the C-terminus of the enzyme leading to a loss of 222 amino acids. Our study suggests that loss of catalase activity in this rare catalase-negative Chilean strain is due to this novel nonsense mutation in the katA gene, which truncates the enzyme to just 283 amino acids.
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Affiliation(s)
| | | | - Dona Benadof
- Public Health Institute, Clinical Laboratory, Hospital Roberto del Río, Chile
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dos Santos DCM, da Costa TM, Rabello RF, Alves FA, de Mondino SSB. Mannitol-negative methicillin-resistant Staphylococcus aureus from nasal swab specimens in Brazil. Braz J Microbiol 2015; 46:531-3. [PMID: 26273270 PMCID: PMC4507547 DOI: 10.1590/s1517-838246220140179] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Accepted: 08/15/2014] [Indexed: 11/22/2022] Open
Abstract
The isolation of mannitol-negative methicillin-resistant Staphylococcus aureus from nasal swabs is reported. Among the 59 isolates, 9 (15%) isolates were mannitol-negative; all of these isolates were categorized as staphylococcal cassette chromosome mec (SCCmec) type IVa. This report emphasizes that mannitol fermentation on mannitol salt agar should not be used as the sole criterion when screening nasal swab specimens for S. aureus.
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Affiliation(s)
- Danielle Caldeira Martins dos Santos
- Universidade Federal Fluminense, Programa de Pós-gradução em
Patologia, Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ, Brasil, Programa de Pós-gradução em Patologia,
Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ,
Brazil
| | - Thaina Miranda da Costa
- Universidade Federal Fluminense, Programa de Pós-gradução em
Patologia, Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ, Brasil, Programa de Pós-gradução em Patologia,
Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ,
Brazil
| | - Renata Fernandes Rabello
- Universidade Federal Fluminense, Departamento de Microbiologia e
Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Niterói, RJ, Brasil, Departamento de Microbiologia e Parasitologia,
Instituto Biomédico, Universidade Federal Fluminense, Niterói, RJ,
Brazil
| | - Fábio Aguiar Alves
- Universidade Federal Fluminense, Programa de Pós-gradução em
Patologia, Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ, Brasil, Programa de Pós-gradução em Patologia,
Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ,
Brazil
| | - Silvia Susana Bona de Mondino
- Universidade Federal Fluminense, Programa de Pós-gradução em
Patologia, Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ, Brasil, Programa de Pós-gradução em Patologia,
Faculdade de Medicina, Universidade Federal Fluminense, Niterói, RJ,
Brazil
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6
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Del'Alamo L, d'Azevedo PA, Strob AJ, Rodríguez-Lopez DV, Monteiro J, Andrade SS, Pignatari ACC, Gales AC. An outbreak of catalase-negative methicillin-resistant Staphylococcus aureus. J Hosp Infect 2007; 65:226-30. [PMID: 17275955 DOI: 10.1016/j.jhin.2006.12.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2006] [Accepted: 12/01/2006] [Indexed: 11/20/2022]
Abstract
The wide dissemination of a major epidemic methicillin-resistant Staphylococcus aureus (MRSA) clone in Brazilian hospitals (Brazilian clone) limits the value of molecular typing techniques such as pulsed-field gel electrophoresis (PFGE) for outbreak investigation. We report the first outbreak of a catalase-negative strain of MRSA, which was initially detected by the unusual result of this phenotypical test. The outbreak occurred in the Hospital Sanatorinhos de Carapicuíba, a 237-bed secondary hospital located in São Paulo, Brazil. From May to August 2002, a total of 11 MRSA isolates were recovered from four patients in the intensive care unit. All the isolates were catalase negative and susceptible only to vancomycin and linezolid. Three of the four patients eventually died. Molecular typing demonstrated an indistinguishable PFGE pattern among the 11 isolates, with similarities to the Brazilian clone and the hospital's usual MRSA strain. This report emphasizes the importance of an uncommon phenotypical result as a marker for initiating an outbreak investigation and should encourage clinical laboratories to recognize and report such isolates.
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Affiliation(s)
- L Del'Alamo
- Hospital Sanatorinhos de Carapicuíba, São Paulo, Brazil
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Shittu A, Lin J, Morrison D. Molecular identification and characterization of mannitol-negative methicillin-resistant Staphylococcus aureus. Diagn Microbiol Infect Dis 2007; 57:93-5. [PMID: 16854554 DOI: 10.1016/j.diagmicrobio.2006.05.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2006] [Revised: 05/04/2006] [Accepted: 05/09/2006] [Indexed: 11/22/2022]
Abstract
We report on the isolation, molecular identification, and characterization of 5 mannitol-negative methicillin-resistant Staphylococcus aureus (MRSA) from clinical samples in KwaZulu-Natal (KZN) province, South Africa. Identification based on phenotypic testing and polymerase chain reaction detection of the S. aureus species-specific nuc gene and the coagulase gene indicated that the mannitol-negative isolates were S. aureus. Furthermore, they were mecA positive, and SCCmec typing demonstrated that all the isolates harbored type IV SCCmec. API STAPH (Biomerieux, Marcy-l'Etoile, France) misidentified 2 mannitol-negative MRSA that belonged to the major clone in KZN province, as Staphylococcus lugdunensis. Although the prevalence and mechanism of mannitol-negative MRSA is unknown, laboratories are encouraged to investigate S. aureus with atypical characteristics.
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Affiliation(s)
- Adebayo Shittu
- School of Biochemistry, Genetics, Microbiology and Plant Pathology, University of KwaZulu-Natal (Westville Campus), Private Bag X54001, Durban, Republic of South Africa.
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