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Gabed N, Verret F, Peticca A, Kryvoruchko I, Gastineau R, Bosson O, Séveno J, Davidovich O, Davidovich N, Witkowski A, Kristoffersen JB, Benali A, Ioannou E, Koutsaviti A, Roussis V, Gâteau H, Phimmaha S, Leignel V, Badawi M, Khiar F, Francezon N, Fodil M, Pasetto P, Mouget JL. What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age. Mar Drugs 2022; 20:md20040234. [PMID: 35447907 PMCID: PMC9033121 DOI: 10.3390/md20040234] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 03/08/2022] [Accepted: 03/18/2022] [Indexed: 02/04/2023] Open
Abstract
The marine pennate diatom Haslea ostrearia has long been known for its characteristic blue pigment marennine, which is responsible for the greening of invertebrate gills, a natural phenomenon of great importance for the oyster industry. For two centuries, this taxon was considered unique; however, the recent description of a new blue Haslea species revealed unsuspected biodiversity. Marennine-like pigments are natural blue dyes that display various biological activities—e.g., antibacterial, antioxidant and antiproliferative—with a great potential for applications in the food, feed, cosmetic and health industries. Regarding fundamental prospects, researchers use model organisms as standards to study cellular and physiological processes in other organisms, and there is a growing and crucial need for more, new and unconventional model organisms to better correspond to the diversity of the tree of life. The present work, thus, advocates for establishing H. ostrearia as a new model organism by presenting its pros and cons—i.e., the interesting aspects of this peculiar diatom (representative of benthic-epiphytic phytoplankton, with original behavior and chemodiversity, controlled sexual reproduction, fundamental and applied-oriented importance, reference genome, and transcriptome will soon be available); it will also present the difficulties encountered before this becomes a reality as it is for other diatom models (the genetics of the species in its infancy, the transformation feasibility to be explored, the routine methods needed to cryopreserve strains of interest).
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Affiliation(s)
- Noujoud Gabed
- Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research (HCMR), Gournes Pediados, 71003 Heraklion, Greece; (N.G.); (J.B.K.); (A.B.)
- Oran High School of Biological Sciences (ESSBO), Cellular and Molecular Biology Department, Oran 31000, Algeria
- Laboratoire d’Aquaculture et Bioremediation AquaBior, Université d’Oran 1, Oran 31000, Algeria
| | - Frédéric Verret
- Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research (HCMR), Gournes Pediados, 71003 Heraklion, Greece; (N.G.); (J.B.K.); (A.B.)
- Correspondence: ; Tel.: +30-2810-337-852
| | - Aurélie Peticca
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Igor Kryvoruchko
- Department of Biology, United Arab Emirates University (UAEU), Al Ain P.O. Box 15551, United Arab Emirates;
| | - Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16, 70-383 Szczecin, Poland; (R.G.); (N.D.); (A.W.)
| | - Orlane Bosson
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Julie Séveno
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Olga Davidovich
- Karadag Scientific Station, Natural Reserve of the Russian Academy of Sciences, Kurortnoe, 98188 Feodosiya, Russia;
| | - Nikolai Davidovich
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16, 70-383 Szczecin, Poland; (R.G.); (N.D.); (A.W.)
- Karadag Scientific Station, Natural Reserve of the Russian Academy of Sciences, Kurortnoe, 98188 Feodosiya, Russia;
| | - Andrzej Witkowski
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16, 70-383 Szczecin, Poland; (R.G.); (N.D.); (A.W.)
| | - Jon Bent Kristoffersen
- Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research (HCMR), Gournes Pediados, 71003 Heraklion, Greece; (N.G.); (J.B.K.); (A.B.)
| | - Amel Benali
- Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research (HCMR), Gournes Pediados, 71003 Heraklion, Greece; (N.G.); (J.B.K.); (A.B.)
- Laboratoire d’Aquaculture et Bioremediation AquaBior, Université d’Oran 1, Oran 31000, Algeria
- Laboratoire de Génétique Moléculaire et Cellulaire, Université des Sciences et de la Technologie d’Oran Mohamed BOUDIAF-USTO-MB, BP 1505, El M’naouer, Oran 31000, Algeria
| | - Efstathia Ioannou
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15771 Athens, Greece; (E.I.); (A.K.); (V.R.)
| | - Aikaterini Koutsaviti
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15771 Athens, Greece; (E.I.); (A.K.); (V.R.)
| | - Vassilios Roussis
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15771 Athens, Greece; (E.I.); (A.K.); (V.R.)
| | - Hélène Gâteau
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Suliya Phimmaha
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Vincent Leignel
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Myriam Badawi
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Feriel Khiar
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Nellie Francezon
- Institut des Molécules et Matériaux du Mans, UMR CNRS 6283, Le Mans Université, Avenue Olivier Messiaen, 2085 Le Mans, France; (N.F.); (P.P.)
| | - Mostefa Fodil
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
| | - Pamela Pasetto
- Institut des Molécules et Matériaux du Mans, UMR CNRS 6283, Le Mans Université, Avenue Olivier Messiaen, 2085 Le Mans, France; (N.F.); (P.P.)
| | - Jean-Luc Mouget
- Laboratoire Biologie des Organismes, Stress, Santé, Environnement (BiOSSE), Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, France; (A.P.); (O.B.); (J.S.); (H.G.); (S.P.); (V.L.); (M.B.); (F.K.); (M.F.); (J.-L.M.)
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Gastineau R, Hansen G, Poulin M, Lemieux C, Turmel M, Bardeau JF, Leignel V, Hardivillier Y, Morançais M, Fleurence J, Gaudin P, Méléder V, Cox EJ, Davidovich NA, Davidovich OI, Witkowski A, Kaczmarska I, Ehrman JM, Soler Onís E, Quintana AM, Mucko M, Mordret S, Sarno D, Jacquette B, Falaise C, Séveno J, Lindquist NL, Kemp PS, Eker-Develi E, Konucu M, Mouget JL. Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms. BIOLOGY 2021; 10:biology10040328. [PMID: 33919887 PMCID: PMC8070900 DOI: 10.3390/biology10040328] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 04/09/2021] [Accepted: 04/10/2021] [Indexed: 12/26/2022]
Abstract
Specimens of a new species of blue diatoms from the genus Haslea Simonsen were discovered in geographically distant sampling sites, first in the Canary Archipelago, then North Carolina, Gulf of Naples, the Croatian South Adriatic Sea, and Turkish coast of the Eastern Mediterranean Sea. An exhaustive characterization of these specimens, using a combined morphological and genomic approach led to the conclusion that they belong to a single new to science cosmopolitan species, Haslea silbo sp. nov. A preliminary characterization of its blue pigment shows similarities to marennine produced by Haslea ostrearia, as evidenced by UV-visible spectrophotometry and Raman spectrometry. Life cycle stages including auxosporulation were also observed, providing data on the cardinal points of this species. For the two most geographically distant populations (North Carolina and East Mediterranean), complete mitochondrial and plastid genomes were sequenced. The mitogenomes of both strains share a rare atp6 pseudogene, but the number, nature, and positions of the group II introns inside its cox1 gene differ between the two populations. There are also two pairs of genes fused in single ORFs. The plastid genomes are characterized by large regions of recombination with plasmid DNA, which are in both cases located between the ycf35 and psbA genes, but whose content differs between the strains. The two sequenced strains hosts three plasmids coding for putative serine recombinase protein whose sequences are compared, and four out of six of these plasmids were highly conserved.
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Affiliation(s)
- Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16a, 70-383 Szczecin, Poland; (N.A.D.); (A.W.)
- Correspondence:
| | - Gert Hansen
- Department of Biology, University of Copenhagen, Universitetsparken 4, 2100 Copenhagen, Denmark;
| | - Michel Poulin
- Research and Collections, Canadian Museum of Nature, P.O. Box 3443, Station D, Ottawa, ON K1P 6P4, Canada;
| | - Claude Lemieux
- Département de biochimie, de microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC G1V 0A6, Canada; (C.L.); (M.T.)
| | - Monique Turmel
- Département de biochimie, de microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC G1V 0A6, Canada; (C.L.); (M.T.)
| | - Jean-François Bardeau
- Institut des Molécules et Matériaux du Mans (IMMM UMR 6283), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (J.-F.B.); (B.J.)
| | - Vincent Leignel
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (V.L.); (Y.H.); (C.F.); (J.S.); (J.-L.M.)
| | - Yann Hardivillier
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (V.L.); (Y.H.); (C.F.); (J.S.); (J.-L.M.)
| | - Michèle Morançais
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Université de Nantes, 2 rue de la Houssinière, CEDEX 3, 44322 Nantes, France; (M.M.); (J.F.); (V.M.)
| | - Joël Fleurence
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Université de Nantes, 2 rue de la Houssinière, CEDEX 3, 44322 Nantes, France; (M.M.); (J.F.); (V.M.)
| | - Pierre Gaudin
- UMR 6112 CNRS LPG, Laboratoire de Planétologie et Géosciences, Nantes Université, 2 rue de la Houssinière, CEDEX 3, 44322 Nantes, France;
| | - Vona Méléder
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Université de Nantes, 2 rue de la Houssinière, CEDEX 3, 44322 Nantes, France; (M.M.); (J.F.); (V.M.)
| | - Eileen J. Cox
- The Natural History Museum, Cromwell Road, London SW7 5BD, UK;
| | - Nikolaï A. Davidovich
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16a, 70-383 Szczecin, Poland; (N.A.D.); (A.W.)
- Karadag Scientific Station–Natural Reserve of the Russian Academy of Sciences, p/o Kurortnoe, Feodosiya, 98188 Crimea, Russia;
| | - Olga I. Davidovich
- Karadag Scientific Station–Natural Reserve of the Russian Academy of Sciences, p/o Kurortnoe, Feodosiya, 98188 Crimea, Russia;
| | - Andrzej Witkowski
- Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16a, 70-383 Szczecin, Poland; (N.A.D.); (A.W.)
| | - Irena Kaczmarska
- Department of Biology, Mount Allison University, Sackville, NB E4L 1G7, Canada;
| | - James M. Ehrman
- Digital Microscopy Facility, Mount Allison University, Sackville, NB E4L 1G7, Canada;
| | - Emilio Soler Onís
- Observatorio Canario de Algas Nocivas (OCHABs), Parque Científico Tecnólogico Marino de Taliarte (FPCT-ULPGC), c/ Miramar, 121 Taliarte, 35214 Las Palmas, Canary Islands, Spain;
| | - Antera Martel Quintana
- Banco Español de Algas (BEA), Instituto de Oceanografía y Cambio Global (IOCAG), Universidad de Las Palmas de Gran Canaria (ULPGC), Muelle de Taliarte s/n, 35214 Telde, Islas Canarias, Spain;
| | - Maja Mucko
- Faculty of Science, Biology Department, University of Zagreb, Rooseveltov trg 6, 10000 Zagreb, Croatia;
| | - Solenn Mordret
- Department of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, 80121 Naples, Italy; (S.M.); (D.S.)
| | - Diana Sarno
- Department of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, 80121 Naples, Italy; (S.M.); (D.S.)
| | - Boris Jacquette
- Institut des Molécules et Matériaux du Mans (IMMM UMR 6283), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (J.-F.B.); (B.J.)
| | - Charlotte Falaise
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (V.L.); (Y.H.); (C.F.); (J.S.); (J.-L.M.)
| | - Julie Séveno
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (V.L.); (Y.H.); (C.F.); (J.S.); (J.-L.M.)
| | - Niels L. Lindquist
- Institute of Marine Sciences, University of North Carolina, Chapel Hill, Morehead City, NC 28557, USA;
| | - Philip S. Kemp
- Kemp Fisheries LLC, 2333 Shore Drive, Morehead City, NC 28557, USA;
| | - Elif Eker-Develi
- Institute of Graduate Studies in Science, Department of Biotechnology, Mersin University, Ciftlikkoy, Mersin 33343, Turkey; (E.E.-D.); (M.K.)
| | - Merve Konucu
- Institute of Graduate Studies in Science, Department of Biotechnology, Mersin University, Ciftlikkoy, Mersin 33343, Turkey; (E.E.-D.); (M.K.)
- BW24-Department of Green Chemistry and Technology, Ghent University, Coupure Links 653, B9000 Gent, Belgium
| | - Jean-Luc Mouget
- FR CNRS 3473 IUML, Mer-Molécules-Santé (MMS, EA 2160), Le Mans Université, Avenue Olivier Messiaen, CEDEX 9, 72085 Le Mans, France; (V.L.); (Y.H.); (C.F.); (J.S.); (J.-L.M.)
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An SM, Choi DH, Lee JH, Lee H, Noh JH. Identification of benthic diatoms isolated from the eastern tidal flats of the Yellow Sea: Comparison between morphological and molecular approaches. PLoS One 2017. [PMID: 28622375 PMCID: PMC5473558 DOI: 10.1371/journal.pone.0179422] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Benthic diatoms isolated from tidal flats in the west coast of Korea were identified through both traditional morphological method and molecular phylogenetic method for methodological comparison. For the molecular phylogenetic analyses, we sequenced the 18S rRNA and the ribulose bisphosphate carboxylase large subunit coding gene, rbcL. Further, the comparative analysis allowed for the assessment of the suitability as a genetic marker for identification of closely related benthic diatom species and as potential barcode gene. Based on the traditional morphological identification system, the 61 isolated strains were classified into 52 previously known taxa from 13 genera. However, 17 strains could not be classified as known species by morphological analyses, suggesting a hidden diversity of benthic diatoms. The Blast search on NCBI's Genebank indicated that the reference sequences for most of the species were absent for the benthic diatoms. Of the two genetic markers, the rbcL genes were more divergent than the 18S rRNA genes. Furthermore, a long branch attraction artefact was found in the 18S rRNA phylogeny. These results suggest that the rbcL gene is a more appropriate genetic marker for identification and classification of benthic diatoms. Considering their high diversity and simple shapes, and thus the difficulty associated with morphological classification of benthic diatoms, a molecular approach could provide a relatively easy and reliable classification system. However, this study suggests that more effort should be made to construct a reliable database containing polyphasic taxonomic data for diatom classification.
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Affiliation(s)
- Sung Min An
- Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Ansan, Republic of Korea
| | - Dong Han Choi
- Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Ansan, Republic of Korea
- Department of Marine Biology, University of Science and Technology, Daejeon, Republic of Korea
| | - Jung Ho Lee
- Department of Biology Education, Daegu University, Gyeongsan, Republic of Korea
| | - Howon Lee
- Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Ansan, Republic of Korea
| | - Jae Hoon Noh
- Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Ansan, Republic of Korea
- Department of Marine Biology, University of Science and Technology, Daejeon, Republic of Korea
- * E-mail:
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Brown TA, Belt ST, Tatarek A, Mundy CJ. Source identification of the Arctic sea ice proxy IP25. Nat Commun 2014; 5:4197. [PMID: 24939562 DOI: 10.1038/ncomms5197] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 05/22/2014] [Indexed: 11/09/2022] Open
Abstract
Analysis of the organic geochemical biomarker IP25 in marine sediments is an established method for carrying out palaeo sea ice reconstructions for the Arctic. Such reconstructions cover timescales from decades back to the early Pleistocene, and are critical for understanding past climate conditions on Earth and for informing climate prediction models. Key attributes of IP25 include its strict association with Arctic sea ice together with its ubiquity and stability in underlying marine sediments; however, the sources of IP25 have remained undetermined. Here we report the identification of IP25 in three (or four) relatively minor (<5%) sea ice diatoms isolated from mixed assemblages collected from the Canadian Arctic. In contrast, IP25 was absent in the dominant taxa. Chemical and taxonomical investigations suggest that the IP25-containing taxa represent the majority of producers and are distributed pan-Arctic, thus establishing the widespread applicability of the IP25 proxy for palaeo Arctic sea ice reconstruction.
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Affiliation(s)
- T A Brown
- Biogeochemistry Research Centre, School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth PL4 8AA, UK
| | - S T Belt
- Biogeochemistry Research Centre, School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth PL4 8AA, UK
| | - A Tatarek
- Institute of Oceanology Polish Academy of Sciences, Powstańców Warszawy 55, 81-712 Sopot, Poland
| | - C J Mundy
- Centre for Earth Observation Science, University of Manitoba, 535 Wallace Building, 125 Dysart Road, Winnipeg, Canada R3T 2N2
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Cox EJ. ONTOGENY, HOMOLOGY, AND TERMINOLOGY-WALL MORPHOGENESIS AS AN AID TO CHARACTER RECOGNITION AND CHARACTER STATE DEFINITION FOR PENNATE DIATOM SYSTEMATICS(1). JOURNAL OF PHYCOLOGY 2012; 48:1-31. [PMID: 27009646 DOI: 10.1111/j.1529-8817.2011.01081.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
This article reviews current knowledge of wall morphogenesis in pennate diatoms in relation to the way characters are defined and described for taxonomic and systematic analyses. It argues that an understanding of ontogeny is essential for the accurate identification of character homologies, which in turn must underpin all phylogenetic and systematic analyses. Terminology should reflect character homology, but most diatom terminology fails to do this, with concomitant confusion and potential taxonomic mistakes. Identifying where information is lacking or misinterpreted are first steps toward improving our understanding of diatom structure and relationships. After reviewing the current knowledge on pennate diatom structure and its development, this article briefly discusses the significance of morphological variation, character polarity, and the vital importance of applying diatom terminology correctly.
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Affiliation(s)
- Eileen J Cox
- Department of Botany, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK
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Systematics of naviculoid diatoms (Bacillariophyta): A preliminary analysis of protoplast and frustule characters for family and order level classification. SYST BIODIVERS 2006. [DOI: 10.1017/s1477200006001940] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Belt ST, Allard WG, Johns L, König WA, Massé G, Robert JM, Rowland S. Variable stereochemistry in highly branched isoprenoids from diatoms. Chirality 2001; 13:415-9. [PMID: 11466760 DOI: 10.1002/chir.1053] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
C(25) highly branched isoprenoid (HBI) alkenes are ubiquitous lipids found in geochemical samples around the globe. The origins of these widespread geochemicals are believed to be restricted to a limited number of diatoms, including Haslea ostrearia (and related species), Rhizosolenia setigera, and Pleurosigma intermedium. The unsaturation of the HBI alkenes ranges from 2-6 in different species and cultures. The number of stereogenic centres is usually limited to two in the HBI alkenes due to double bond positions. The relative and/or absolute configurations for these have been determined for a range of HBI alkenes produced from different diatoms cultured under a number of growth conditions. These determinations have involved a combined spectroscopic and chromatographic analysis using NMR spectroscopy and chiral gas chromatography, respectively. HBIs isolated from Haslea spp. belong to a specific structural type which exhibit configurational diastereoisomerism, while those isolated from P. intermedium and R. setigera represent a different structural type and usually exist as mixtures of geometric isomers only. HBIs are reported from a new species of diatom whose stereochemical properties lie between those found for Haslea spp. and P. intermedium.
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Affiliation(s)
- S T Belt
- Department of Environmental Sciences, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, Devon, UK.
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Allard WG, Belt ST, Massé G, Naumann R, Robert JM, Rowland S. Tetra-unsaturated sesterterpenoids (Haslenes) from Haslea ostrearia and related species. PHYTOCHEMISTRY 2001; 56:795-800. [PMID: 11324906 DOI: 10.1016/s0031-9422(00)00429-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The structures and distributions of C25 highly branched isoprenoid (HBI) alkenes (Haslenes) have been determined following isolation from cultures of the diatoms Haslea ostrearia, Haslea crucigera, Haslea pseudostrearia and Haslea saltstonica. The distributions of the HBIs change between Haslea species and also between different cultures of the same species. Large scale culturing of H. ostrearia and H. pseudostrearia has enabled the structures of three new tetra-unsaturated alkenes to be determined by NMR spectroscopy. The structural relationships between different Haslenes together with the potential significance of the biosynthesis of HBIs by the Haslea genus is discussed.
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Affiliation(s)
- W G Allard
- Department of Environmental Sciences, University of Plymouth, UK
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