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Voutsa V, Battaglia D, Bracken LJ, Brovelli A, Costescu J, Díaz Muñoz M, Fath BD, Funk A, Guirro M, Hein T, Kerschner C, Kimmich C, Lima V, Messé A, Parsons AJ, Perez J, Pöppl R, Prell C, Recinos S, Shi Y, Tiwari S, Turnbull L, Wainwright J, Waxenecker H, Hütt MT. Two classes of functional connectivity in dynamical processes in networks. J R Soc Interface 2021; 18:20210486. [PMID: 34665977 PMCID: PMC8526174 DOI: 10.1098/rsif.2021.0486] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 09/13/2021] [Indexed: 12/12/2022] Open
Abstract
The relationship between network structure and dynamics is one of the most extensively investigated problems in the theory of complex systems of recent years. Understanding this relationship is of relevance to a range of disciplines-from neuroscience to geomorphology. A major strategy of investigating this relationship is the quantitative comparison of a representation of network architecture (structural connectivity, SC) with a (network) representation of the dynamics (functional connectivity, FC). Here, we show that one can distinguish two classes of functional connectivity-one based on simultaneous activity (co-activity) of nodes, the other based on sequential activity of nodes. We delineate these two classes in different categories of dynamical processes-excitations, regular and chaotic oscillators-and provide examples for SC/FC correlations of both classes in each of these models. We expand the theoretical view of the SC/FC relationships, with conceptual instances of the SC and the two classes of FC for various application scenarios in geomorphology, ecology, systems biology, neuroscience and socio-ecological systems. Seeing the organisation of dynamical processes in a network either as governed by co-activity or by sequential activity allows us to bring some order in the myriad of observations relating structure and function of complex networks.
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Affiliation(s)
- Venetia Voutsa
- Department of Life Sciences and Chemistry, Jacobs University Bremen, 28759 Bremen, Germany
| | - Demian Battaglia
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (UMR 1106), Marseille, France
- University of Strasbourg Institute for Advanced Studies (USIAS), Strasbourg 67083, France
| | | | - Andrea Brovelli
- Aix-Marseille Université, CNRS, Institut de Neurosciences de la Timone (UMR 7289), Marseille, France
| | - Julia Costescu
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Mario Díaz Muñoz
- Department of Sustainability, Governance and Methods, Modul University Vienna, 1190 Vienna, Austria
| | - Brian D. Fath
- Department of Biological Sciences, Towson University, Towson, Maryland 21252, USA
- Advancing Systems Analysis Program, International Institute for Applied Systems Analysis, Laxenburg 2361, Austria
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Andrea Funk
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
- WasserCluster Lunz - Biologische Station GmbH, Dr. Carl Kupelwieser Promenade 5, 3293 Lunz am See, Austria
| | - Mel Guirro
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Thomas Hein
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
- WasserCluster Lunz - Biologische Station GmbH, Dr. Carl Kupelwieser Promenade 5, 3293 Lunz am See, Austria
| | - Christian Kerschner
- Department of Sustainability, Governance and Methods, Modul University Vienna, 1190 Vienna, Austria
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Christian Kimmich
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
- Regional Science and Environmental Research, Institute for Advanced Studies, 1080 Vienna, Austria
| | - Vinicius Lima
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (UMR 1106), Marseille, France
- Aix-Marseille Université, CNRS, Institut de Neurosciences de la Timone (UMR 7289), Marseille, France
| | - Arnaud Messé
- Department of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, Germany
| | | | - John Perez
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Ronald Pöppl
- Department of Geography and Regional Research, University of Vienna, Universitätsstr. 7, 1010 Vienna, Austria
| | - Christina Prell
- Department of Cultural Geography, University of Groningen, 9747 AD, Groningen, The Netherlands
| | - Sonia Recinos
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
| | - Yanhua Shi
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Shubham Tiwari
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Laura Turnbull
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - John Wainwright
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Harald Waxenecker
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Marc-Thorsten Hütt
- Department of Life Sciences and Chemistry, Jacobs University Bremen, 28759 Bremen, Germany
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2
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Neurodynamical classifiers with low model complexity. Neural Netw 2020; 132:405-415. [PMID: 33011671 DOI: 10.1016/j.neunet.2020.08.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 07/18/2020] [Accepted: 08/11/2020] [Indexed: 11/18/2022]
Abstract
The recently proposed Minimal Complexity Machine (MCM) finds a hyperplane classifier by minimizing an upper bound on the Vapnik-Chervonenkis (VC) dimension. The VC dimension measures the capacity or model complexity of a learning machine. Vapnik's risk formula indicates that models with smaller VC dimension are expected to show improved generalization. On many benchmark datasets, the MCM generalizes better than SVMs and uses far fewer support vectors than the number used by SVMs. In this paper, we describe a neural network that converges to the MCM solution. We employ the MCM neurodynamical system as the final layer of a neural network architecture. Our approach also optimizes the weights of all layers in order to minimize the objective, which is a combination of a bound on the VC dimension and the classification error. We illustrate the use of this model for robust binary and multi-class classification. Numerical experiments on benchmark datasets from the UCI repository show that the proposed approach is scalable and accurate, and learns models with improved accuracies and fewer support vectors.
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3
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Bylinskii Z, DeGennaro EM, Rajalingham R, Ruda H, Zhang J, Tsotsos JK. Towards the quantitative evaluation of visual attention models. Vision Res 2015; 116:258-68. [PMID: 25951756 DOI: 10.1016/j.visres.2015.04.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Revised: 03/15/2015] [Accepted: 04/02/2015] [Indexed: 11/17/2022]
Abstract
Scores of visual attention models have been developed over the past several decades of research. Differences in implementation, assumptions, and evaluations have made comparison of these models very difficult. Taxonomies have been constructed in an attempt at the organization and classification of models, but are not sufficient at quantifying which classes of models are most capable of explaining available data. At the same time, a multitude of physiological and behavioral findings have been published, measuring various aspects of human and non-human primate visual attention. All of these elements highlight the need to integrate the computational models with the data by (1) operationalizing the definitions of visual attention tasks and (2) designing benchmark datasets to measure success on specific tasks, under these definitions. In this paper, we provide some examples of operationalizing and benchmarking different visual attention tasks, along with the relevant design considerations.
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Affiliation(s)
- Z Bylinskii
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge 02141, USA; Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge 02141, USA.
| | - E M DeGennaro
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge 02141, USA
| | - R Rajalingham
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge 02141, USA
| | - H Ruda
- Computational Vision Laboratory, Department of Communication Sciences and Disorders, Northeastern University, Boston 02115, USA
| | - J Zhang
- School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing 210094, China; Visual Attention Lab, Brigham and Women's Hospital, Cambridge, MA 02139, USA
| | - J K Tsotsos
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge 02141, USA; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge 02141, USA; Electrical Engineering and Computer Science, Centre for Vision Research, York University, Toronto M3J 1P3, Canada
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4
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Zavaglia M, Canolty RT, Schofield TM, Leff AP, Ursino M, Knight RT, Penny WD. A dynamical pattern recognition model of γ activity in auditory cortex. Neural Netw 2012; 28:1-14. [PMID: 22327049 PMCID: PMC3314972 DOI: 10.1016/j.neunet.2011.12.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2010] [Revised: 12/20/2011] [Accepted: 12/21/2011] [Indexed: 11/29/2022]
Abstract
This paper describes a dynamical process which serves both as a model of temporal pattern recognition in the brain and as a forward model of neuroimaging data. This process is considered at two separate levels of analysis: the algorithmic and implementation levels. At an algorithmic level, recognition is based on the use of Occurrence Time features. Using a speech digit database we show that for noisy recognition environments, these features rival standard cepstral coefficient features. At an implementation level, the model is defined using a Weakly Coupled Oscillator (WCO) framework and uses a transient synchronization mechanism to signal a recognition event. In a second set of experiments, we use the strength of the synchronization event to predict the high gamma (75–150 Hz) activity produced by the brain in response to word versus non-word stimuli. Quantitative model fits allow us to make inferences about parameters governing pattern recognition dynamics in the brain.
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Affiliation(s)
- M Zavaglia
- Department of Electronics, Computer Science and Systems (DEIS), Via Venezia 52, 47023 Cesena, Italy
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5
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Qu J, Wang R, Du Y. An improved selective attention model considering orientation preferences. Neural Comput Appl 2011. [DOI: 10.1007/s00521-011-0679-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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6
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Selecting salient objects in real scenes: An oscillatory correlation model. Neural Netw 2011; 24:54-64. [DOI: 10.1016/j.neunet.2010.09.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2010] [Revised: 09/06/2010] [Accepted: 09/07/2010] [Indexed: 11/21/2022]
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A neural model of selective attention and object segmentation in the visual scene: an approach based on partial synchronization and star-like architecture of connections. Neural Netw 2009; 22:707-19. [PMID: 19616919 DOI: 10.1016/j.neunet.2009.06.047] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Revised: 05/30/2009] [Accepted: 06/25/2009] [Indexed: 11/22/2022]
Abstract
A brain-inspired computational system is presented that allows sequential selection and processing of objects from a visual scene. The system is comprised of three modules. The selective attention module is designed as a network of spiking neurons of the Hodgkin-Huxley type with star-like connections between the central unit and peripheral elements. The attention focus is represented by those peripheral neurons that generate spikes synchronously with the central neuron while the activity of other peripheral neurons is suppressed. Such dynamics corresponds to the partial synchronization mode. It is shown that peripheral neurons with higher firing rates are preferentially drawn into partial synchronization. We show that local excitatory connections facilitate synchronization, while local inhibitory connections help distinguishing between two groups of peripheral neurons with similar intrinsic frequencies. The module automatically scans a visual scene and sequentially selects regions of interest for detailed processing and object segmentation. The contour extraction module implements standard image processing algorithms for contour extraction. The module computes raw contours of objects accompanied by noise and some spurious inclusions. At the next stage, the object segmentation module designed as a network of phase oscillators is used for precise determination of object boundaries and noise suppression. This module has a star-like architecture of connections. The segmented object is represented by a group of peripheral oscillators working in the regime of partial synchronization with the central oscillator. The functioning of each module is illustrated by an example of processing of the visual scene taken from a visual stream of a robot camera.
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Chik D, Borisyuk R, Kazanovich Y. Selective attention model with spiking elements. Neural Netw 2009; 22:890-900. [PMID: 19278823 DOI: 10.1016/j.neunet.2009.02.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2008] [Revised: 12/03/2008] [Accepted: 02/12/2009] [Indexed: 11/25/2022]
Abstract
A new biologically plausible model of visual selective attention is developed based on synaptically coupled Hodgkin-Huxley neurons. The model is designed according to a two-layer architecture of excitatory and inhibitory connections which comprises two central neurons and a population of peripheral neurons. Two types of inhibition from the central neurons are present: fixed inhibition which is responsible for the formation of the attention focus, and short-term plastic inhibition which is responsible for the shift of attention. The regimes of synchronous dynamics associated with the development of the attentional focus are studied. In particular, the regime of partial synchronization between spiking activity of the central and peripheral neurons is interpreted as object selection to the focus of attention. It is shown that peripheral neurons with higher firing rates are selected preferentially by the attention system. The model correctly reproduces some observations concerning the mechanisms of attentional control, such as the coherence of spikes in the population of neurons included in the focus of attention, and the inhibition of neurons outside the focus of attention. Sequential selection of stimuli simultaneously present in the visual scene is demonstrated by the model in the frequency domain in both a formal example and a real image.
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Affiliation(s)
- David Chik
- Centre for Theoretical and Computational Neuroscience, University of Plymouth, Plymouth, UK.
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9
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Abstract
An oscillatory neural network model of multiple object tracking is described. The model works with a set of identical visual objects moving around the screen. At the initial stage, the model selects into the focus of attention a subset of objects initially marked as targets. Other objects are used as distractors. The model aims to preserve the initial separation between targets and distractors while objects are moving. This is achieved by a proper interplay of synchronizing and desynchronizing interactions in a multilayer network, where each layer is responsible for tracking a single target. The results of the model simulation are presented and compared with experimental data. In agreement with experimental evidence, simulations with a larger number of targets have shown higher error rates. Also, the functioning of the model in the case of temporarily overlapping objects is presented.
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Affiliation(s)
- Yakov Kazanovich
- Institute of Mathematical Problems in Biology, Russian Academy of Sciences Pushchino, Moscow Region, 142290, Russia.
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10
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Abstract
A fundamental issue in neural computation is the binding problem, which refers to how sensory elements in a scene organize into perceived objects, or percepts. The issue of binding is hotly debated in recent years in neuroscience and related communities. Much of the debate, however, gives little attention to computational considerations. This review intends to elucidate the computational issues that bear directly on the binding issue. The review starts with two problems considered by Rosenblatt to be the most challenging to the development of perceptron theory more than 40 years ago, and argues that the main challenge is the figure-ground separation problem, which is intrinsically related to the binding problem. The theme of the review is that the time dimension is essential for systematically attacking Rosenblatt's challenge. The temporal correlation theory as well as its special form--oscillatory correlation theory-is discussed as an adequate representation theory to address the binding problem. Recent advances in understanding oscillatory dynamics are reviewed, and these advances have overcome key computational obstacles for the development of the oscillatory correlation theory. We survey a variety of studies that address the scene analysis problem. The results of these studies have substantially advanced the capability of neural networks for figure-ground separation. A number of issues regarding oscillatory correlation are considered and clarified. Finally, the time dimension is argued to be necessary for versatile computing.
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Affiliation(s)
- Deliang Wang
- Department of Computer Science and Engineering and the Center for Cognitive Science, The Ohio State University, Columbus, OH 43210-1277, USA.
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11
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Carmeli C, Knyazeva MG, Innocenti GM, De Feo O. Assessment of EEG synchronization based on state-space analysis. Neuroimage 2005; 25:339-54. [PMID: 15784413 DOI: 10.1016/j.neuroimage.2004.11.049] [Citation(s) in RCA: 111] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2004] [Revised: 10/06/2004] [Accepted: 11/30/2004] [Indexed: 11/28/2022] Open
Abstract
Cortical computation involves the formation of cooperative neuronal assemblies characterized by synchronous oscillatory activity. A traditional method for the identification of synchronous neuronal assemblies has been the coherence analysis of EEG signals. Here, we suggest a new method called S estimator, whereby cortical synchrony is defined from the embedding dimension in a state-space. We first validated the method on clusters of chaotic coupled oscillators and compared its performance to that of other methods for assessing synchronization. Then nine adult subjects were studied with high-density EEG recordings, while they viewed in the two hemifields (hence with separate hemispheres) identical sinusoidal gratings either arranged collinearly and moving together, or orthogonally oriented and moving at 90 degrees . The estimated synchronization increased with the collinear gratings over a cluster of occipital electrodes spanning both hemispheres, whereas over temporo-parietal regions of both hemispheres, it decreased with the same stimulus and it increased with the orthogonal gratings. Separate calculations for different EEG frequencies showed that the occipital clusters involved synchronization in the beta band and the temporal clusters in the alpha band. The gamma band appeared to be insensitive to stimulus diversity. Different stimulus configurations, therefore, appear to cause a complex rearrangement of synchronous neuronal assemblies distributed over the cortex, in particular over the visual cortex.
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Affiliation(s)
- Cristian Carmeli
- Laboratory of Nonlinear Systems, Swiss Federal Institute of Technology Lausanne, EPFL-IC-LANOS, Building EL E, Lausanne CH-1015 Switzerland
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12
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13
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Borisyuk RM, Kazanovich YB. Oscillatory model of attention-guided object selection and novelty detection. Neural Netw 2004; 17:899-915. [PMID: 15312834 DOI: 10.1016/j.neunet.2004.03.005] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2002] [Revised: 03/12/2004] [Accepted: 03/12/2004] [Indexed: 10/26/2022]
Abstract
We develop a new oscillatory model that combines consecutive selection of objects and discrimination between new and familiar objects. The model works with visual information and fulfils the following operations: (1) separation of different objects according to their spatial connectivity; (2) consecutive selection of objects located in the visual field into the attention focus; (3) extraction of features; (4) representation of objects in working memory; (5) novelty detection of objects. The functioning of the model is based on two main principles: the synchronization of oscillators through phase-locking and resonant increase of the amplitudes of oscillators if they work in-phase with other oscillators. The results of computer simulation of the model are described for visual stimuli representing printed words.
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Affiliation(s)
- Roman M Borisyuk
- Centre for Theoretical & Computational Neuroscience, University of Plymouth, Plymouth PL4 8AA, UK.
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14
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Abstract
A new mechanism to control attention focus formation and switching in the model of selective attention is suggested and studied. The model is based on an oscillatory neural network (ONN) with the star-like architecture and phase shifts in connections between oscillators. Attention is modelled as a dynamical mode of partial synchronisation between a particular subgroup of oscillators and the central oscillator (CO). A new theoretical method to study full and partial synchronisation in the system is presented. Equations for the frequency of synchronisation are derived which allow the programming of the dynamical behaviour of the system depending on the parameters. In particular, we show that phase shifts in connections between oscillators provide an efficient mechanism of attention control.
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Affiliation(s)
- Roman M Borisyuk
- Centre for Neural and Adaptive Systems, School of Computing, University of Plymouth, Drake Circus, Plymouth PL4 8AA, UK.
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15
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Abstract
An engineering control approach is developed for the movement of attention, based on several features: experimental data indicating separate sites for attention modulation and for the creation of that modulation; the resulting analogy with motor control, to which an engineering approach has been applied; simulation and qualitative results supporting the presence of several of the necessary modules. These features are reviewed in the paper and a control model developed for the movement of attention. The engineering control framework is extended to the attended learning of motor control, again with description of support arising from simulations and qualitative analysis of several paradigms. The framework is even further extended to analyze how consciousness could arise during attentive processing, using the COrollary Discharge of Attention Movement (CODAM) model. This model is extended to encompass the temporal development of activity in various brain sites. Particular signals of the CODAM model are described and related to paradigms such as the attentional blink (AB) and features of simultaneous experience in neglect. A program of future explorations of the CODAM model and a set of open questions conclude the paper.
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Affiliation(s)
- John G Taylor
- Department of Mathematics, King's College London, London WC2R 2LS, UK.
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16
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Abstract
An explanation, based on simple analysis of the spatiotemporal variations of the visual environment, is given to the automatic capture and focusing of visual attention. It is assumed that the transmittance for the sensory signals is modulated by separate control circuits that sample input from the same area of the visual field but at a lower resolution. When these circuits detect significant spatial and/or temporal variations, they "open gates" for the more accurate information arising from the same area. If the variations are related to the spatial resolution, which varies within wide limits over the retina, the visual field is "opened" up to a radius where it captures the most salient structures of the image. If the temporal variations of the signals are further emphasized, the high spatial frequencies begin to dominate. If then the gaze is moved by a small amount, the transmittance of the foveal signal paths is activated strongest.
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Affiliation(s)
- Teuvo Kohonen
- Neural Networks Research Centre, Helsinki University of Technology, P.O. Box 5400, FIN-02015 Hut, Espoo, Finland.
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Abstract
A control model of the movement of the focus of attention is developed and applied to explain its observed effects on single cell activity and to various quantitative features of the Posner benefit paradigm. This supports the presence of an inverse controller and a rules component in the control model. The ability of the control model to explain a range of deficits is then analyzed, as is its relation to other modeling approaches.
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Affiliation(s)
- J G Taylor
- Department of Mathematics, King's College, Strand, London, UK.
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