Concentration dependence of the anisotropy of the electrical polarizability of a model DNA fragment in salt-free aqueous solution studied by Monte Carlo simulations

Low-frequency collective exchange mode in the dielectric spectrum of salt-free dilute polyelectrolyte solutions

We study the frequency-dependent dielectric response of flexible polyelectrolyte chains in aqueous salt-free dilute solution as a function of polymer concentration and length by means of Brownian dynamics simulations including hydrodynamic interactions. We show that condensed and uncondensed counter ions are characterized by different dielectric response spectra and thus confirm long-held scaling assumptions used for the interpretation of experimental data. In addition to the well-known relaxation modes of condensed and uncondensed counter ions we observe for a single polyelectrolyte chain, we find in many-chain simulations a novel spectral feature at low frequencies that essentially corresponds to an exchange of counter ions between neighboring polyelectrolytes. Our results suggest that the experimental low-frequency dielectric mode might not be due to condensed counter ions, as is commonly assumed, but rather due to a collective many-chain process. This could resolve a long-standing puzzle in the comparison of experimental results and scaling predictions.

Electric polarizability of DNA in aqueous salt solution

Monte Carlo simulations are performed to determine the anisotropy of the electric polarizability of a model DNA fragment in aqueous salt solution. By taking into consideration the participation of coions in the electroneutrality condition, at every simulation step, we obtain a list of counterions constituting the net charge arranged in increasing order of their distance from the DNA and calculate the contribution to the dipole moment from the first n counterions in the list. We define a partial polarizability tensor due to these n counterions to understand the origin of the polarizability in close relation to the solution structure. The ionic distributions are described by the counterion condensation theory. Characteristic features of the electric properties of polyelectrolytes are reproduced. The anisotropy of the electric polarizability Deltaalpha of DNA decreases with the addition of salt, yielding values comparable to experiment. The effect of electrophoretic motion of the polyion is examined by estimating its upper limit.

Dielectric dispersion of short single-stranded DNA in aqueous solutions with and without added salt

Dielectric spectroscopy measurements were performed for aqueous solutions of short single-stranded DNA with 30 to 120 bases of thymine over a frequency range of 10;{5} to 10;{8}Hz . Dielectric dispersion was found to include two relaxation processes in the ranges from 10;{5} to 10;{6} and from 10;{6} to 10;{8}Hz , respectively, with the latter mainly discussed in this study. The dielectric increment and the relaxation time of the high-frequency relaxation of DNA in solutions without added salt exhibited concentration and polymer-length dependences eventually identical to those for dilute polyion solutions described in previous studies. For solutions with added salt, on the other hand, those dielectric parameters were independent of salt concentration up to a certain critical value and started to decrease with further increasing salt concentration. This critical behavior is well explained by our newly extended cell model that takes into account the spatial distribution of loosely bound counterions around DNA molecules as a function of salt concentration.