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Abdel-Naby MA, El-Wafa WMA, Salem GEM. Molecular characterization, catalytic, kinetic and thermodynamic properties of protease produced by a mutant of Bacillus cereus-S6-3. Int J Biol Macromol 2020; 160:695-702. [PMID: 32485254 DOI: 10.1016/j.ijbiomac.2020.05.241] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 05/18/2020] [Accepted: 05/19/2020] [Indexed: 01/19/2023]
Abstract
The proteolytic strain Bacillus cereus-S6-3 was subjected to mutagenic treatments viz. UV irradiations and methyl methane sulfonate (MMS). The obtained mutant strain, B. cereus-S6-3/UM90 showed 1.34 fold over the parent strain. Molecular characterization of proteases from the parent (PP/S6-3) and mutant (PM/UM90) strains indicated that they were consisted of two domains and binds a zinc ion and 4 calcium ions in the active site. Amino acid sequence alignment of PM/UM90 protease showed 19 amino acid residues were substituted compared to that of the wild-type enzyme. However, both proteases contained equal number of aromatic and hydrophobic amino acids. Protease from PM/UM90 showed an effective improvement in thermal properties in terms of reaction temperature, t1/2, the values of kd, activation energy (Ea), and decimal reduction time (D) within the temperature range from 60 to 80 °C. In addition, the kinetic and thermodynamic parameters for substrate hydrolysis (i.e., Km, Vmax, ΔH*, ΔG*, ΔS*, kcat, Vmax/Km, kcat/Km, ΔG*E-T and ΔG*E-S) showed a significant improvement of the catalytic efficiency for PM/UM90 protease. Furthermore, the correlation between thermodynamic properties and the patterns of amino acid substitution of wild-type enzyme to has been discussed.
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Affiliation(s)
- Mohamed A Abdel-Naby
- Department of Chemistry of Natural and Microbial Products, National Research Center, Cairo, Egypt.
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Wehaidy HR, Abdel-Naby MA, Shousha WG, Elmallah MIY, Shawky MM. Improving the catalytic, kinetic and thermodynamic properties of Bacillus subtilis KU710517 milk clotting enzyme via conjugation with polyethylene glycol. Int J Biol Macromol 2018; 111:296-301. [PMID: 29309864 DOI: 10.1016/j.ijbiomac.2017.12.125] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 12/06/2017] [Accepted: 12/21/2017] [Indexed: 10/18/2022]
Abstract
Milk clotting enzyme (MCE) produced by Bacillus subtilis KU710517 was conjugated to several activated polysaccharides. Among all the conjugates, the enzyme conjugated with polyethylene glycol (PEG) exhibited the highest retained activity (551U/mg protein) with a recovered activity of 95.3%. The activation energy of PEG-conjugated enzyme was calculated as 24.56kJ·mol-1which was lower than that of the native one (29.27kJ·mol-1) however, the temperature quotient (Q10) was about 1.08 for the two forms of the enzyme. The calculated half-life times of PEG-conjugated enzyme at 55 and 60°C were 317.78 and 128.6min respectively, whereas at the same temperatures the native enzyme had lower half-life times (53 and 19.6min respectively). The data of thermodynamic analysis for substrate catalysis including the specificity constant (Vmax/Km), turnover number (kcat), catalytic efficiency (kcat/Km), enthalpy of activation (ΔH*), free energy of activation (ΔG*), free energy for transition state formation ΔG*E-T and free energy of substrate binding ΔG*E-S were determined for both native and PEG-conjugated enzyme. In addition, the thermodynamic parameters for irreversible inactivation (ΔH, ΔG, ΔS) were evaluated. The calculated results indicated that the catalytic properties after the PEG-conjugation were significantly improved.
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Affiliation(s)
- Hala Refaat Wehaidy
- Chemistry of Natural and Microbial Products Department, National Research Centre, Dokki, Giza, Egypt.
| | - Mohamed Ahmed Abdel-Naby
- Chemistry of Natural and Microbial Products Department, National Research Centre, Dokki, Giza, Egypt
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Catalytic, kinetic and thermodynamic properties of stabilized Bacillus stearothermophilus alkaline protease. Int J Biol Macromol 2016; 96:265-271. [PMID: 27899299 DOI: 10.1016/j.ijbiomac.2016.11.094] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Revised: 11/04/2016] [Accepted: 11/22/2016] [Indexed: 11/23/2022]
Abstract
Bacillus stearothermophilus alkaline protease was conjugated to several oxidized polysaccharides of different chemical structure. The conjugates were evaluated for the kinetic and thermodynamic stability. The conjugated enzyme with oxidized pectin had the highest retained activity (79.5%) and the highest half-life (T1/2) at 50°C and pH 9.0. Compared to the native protease, the conjugated preparation exhibited lower activation energy (Ea), lower deactivation constant rate (kd), higher T1/2, and higher D values (decimal reduction time) within the temperature range of 50-60°C. The thermodynamic parameters for irreversible inactivation of native and conjugated protease indicated that conjugation significantly decreased entropy (ΔS*) and enthalpy (ΔH*) of deactivation. The calculated value of activation energy for thermal denaturation (Ead) for the conjugated enzyme was 20.4KJmole-1 higher over the native one. The results of thermodynamic analysis for substrate hydrolysis indicated that the enthalpy of activation (ΔH*) and free energy of activation (free energy of substrate binding) ΔG*E-S and (ΔG*), (free energy of transition state) ΔG*E-T values were lower for the modified protease. Similarly, there was significant improvement of kcat, kcat/Km values. The enzyme proved to be metalloprotease and significantly stimulated by Ca2+ and Mg2+ whereas Hg2+, Fe3+ Cu2+ and Zn2+ inhibited the enzyme activity. There was no pronounced effect on substrate specificity after conjugation.
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Abdel-Naby MA, A. Ibrahim M, El-Refai H. Catalytic, kinetic and thermodynamic properties of Bacillus pumilus FH9 keratinase conjugated with activated pectin. Int J Biol Macromol 2016; 85:238-45. [DOI: 10.1016/j.ijbiomac.2015.12.078] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Revised: 11/08/2015] [Accepted: 12/22/2015] [Indexed: 10/22/2022]
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Abdel–Naby MA, Fouad AA, El-Refai H. Catalytic and thermodynamic properties of glycosylated Bacillus cereus cyclodextrin glycosyltransferase. Int J Biol Macromol 2015; 76:132-7. [DOI: 10.1016/j.ijbiomac.2015.02.017] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Revised: 02/06/2015] [Accepted: 02/07/2015] [Indexed: 10/24/2022]
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Ahmed SA, El-Shayeb NMA, Hashem AGM, Saleh SAA, Abdel-Fattah AF. Chemical modification of Aspergillus niger β-glucosidase and its catalytic properties. Braz J Microbiol 2015. [PMID: 26221085 PMCID: PMC4512046 DOI: 10.1590/s1517-838246120120462] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Aspergillus niger
β-glucosidase was modified by covalent coupling to periodate activated polysaccharides (glycosylation). The conjugated enzyme to activated starch showed the highest specific activity (128.5 U/mg protein). Compared to the native enzyme, the conjugated form exhibited: a higher optimal reaction temperature, a lower Ea (activation energy), a higher K
m
(Michaelis constant) and Vmax (maximal reaction rate), and improved thermal stability. The calculated t
1/2
(half-life) values of heat in-activation at 60 °C and 70 °C were 245.7 and 54.5 min respectively, whereas at these temperatures the native enzyme was less stable (t
1/2
of 200.0 and 49.5 min respectively). The conjugated enzyme retained 32.3 and 29.7%, respectively from its initial activity in presence of 5 mM Sodium Dodecyl Sulphate (SDS) and p
-Chloro Mercuri Benzoate (
p
-CMB), while the native enzyme showed a remarkable loss of activity (retained activity 1.61 and 13.7%, respectively). The present work has established the potential of glycosylation to enhance the catalytic properties of β-glucosidase enzyme, making this enzyme potentially feasible for biotechnological applications.
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Affiliation(s)
- Samia A Ahmed
- Department of Chemistry of Natural and Microbial Products, National Research Centre, Cairo, Egypt
| | - Nefisa M A El-Shayeb
- Department of Chemistry of Natural and Microbial Products, National Research Centre, Cairo, Egypt
| | | | - Shireen A A Saleh
- Department of Chemistry of Natural and Microbial Products, National Research Centre, Cairo, Egypt
| | - Ahmed F Abdel-Fattah
- Department of Chemistry of Natural and Microbial Products, National Research Centre, Cairo, Egypt
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Villalonga ML, Díez P, Sánchez A, Gamella M, Pingarrón JM, Villalonga R. Neoglycoenzymes. Chem Rev 2014; 114:4868-917. [DOI: 10.1021/cr400290x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
| | - Paula Díez
- Department
of Analytical Chemistry, Faculty of Chemistry, Complutense University of Madrid, 28040-Madrid, Spain
| | - Alfredo Sánchez
- Department
of Analytical Chemistry, Faculty of Chemistry, Complutense University of Madrid, 28040-Madrid, Spain
| | - María Gamella
- Department
of Analytical Chemistry, Faculty of Chemistry, Complutense University of Madrid, 28040-Madrid, Spain
| | - José M. Pingarrón
- Department
of Analytical Chemistry, Faculty of Chemistry, Complutense University of Madrid, 28040-Madrid, Spain
- IMDEA
Nanoscience, Cantoblanco Universitary City, 28049-Madrid, Spain
| | - Reynaldo Villalonga
- Department
of Analytical Chemistry, Faculty of Chemistry, Complutense University of Madrid, 28040-Madrid, Spain
- IMDEA
Nanoscience, Cantoblanco Universitary City, 28049-Madrid, Spain
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Ahmed SA, El-Shayeb NMA, Hashem AM, Saleh SA, Abdel-Fattah AF. Biochemical studies on immobilized fungal β-glucosidase. BRAZILIAN JOURNAL OF CHEMICAL ENGINEERING 2013. [DOI: 10.1590/s0104-66322013000400007] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Enzymic synthesis of levan and fructo-oligosaccharides by Bacillus circulans and improvement of levansucrase stability by carbohydrate coupling. World J Microbiol Biotechnol 2009. [DOI: 10.1007/s11274-009-9957-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Mesta L, Rascle C, Durand R, Fèvre M. Construction of a chimeric xylanase using multidomain enzymes from Neocallimastix frontalis. Enzyme Microb Technol 2001. [DOI: 10.1016/s0141-0229(01)00411-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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