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Song S, Wang Y, Tian X, He W, Chen F, Wu J, Zhang Q. Predicting the Melting Point of Energetic Molecules Using a Learnable Graph Neural Fingerprint Model. J Phys Chem A 2023; 127:4328-4337. [PMID: 37141395 DOI: 10.1021/acs.jpca.3c00112] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Melting point prediction for organic molecules has drawn widespread attention from both academic and industrial communities. In this work, a learnable graph neural fingerprint (GNF) was employed to develop a melting point prediction model using a dataset of over 90,000 organic molecules. The GNF model exhibited a significant advantage, with a mean absolute error (MAE) of 25.0 K, when compared to other featurization methods. Furthermore, by integrating prior knowledge through a customized descriptor set (i.e., CDS) into GNF, the accuracy of the resulting model, GNF_CDS, improved to 24.7 K, surpassing the performance of previously reported models for a wide range of structurally diverse organic compounds. Moreover, the generalizability of the GNF_CDS model was significantly improved with a decreased MAE of 17 K for an independent dataset containing melt-castable energetic molecules. This work clearly demonstrates that prior knowledge is still beneficial for modeling molecular properties despite the powerful learning capability of graph neural networks, especially in specific fields where chemical data are lacking.
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Affiliation(s)
- Siwei Song
- Institute of Chemical Materials, China Academy of Engineering Physics, Mianyang, Sichuan 621000, China
| | - Yi Wang
- Institute of Chemical Materials, China Academy of Engineering Physics, Mianyang, Sichuan 621000, China
| | - Xiaolan Tian
- Institute of Chemical Materials, China Academy of Engineering Physics, Mianyang, Sichuan 621000, China
| | - Wei He
- School of Aeronautics and Astronautics, Sichuan University, Chengdu, Sichuan 610065, China
| | - Fang Chen
- Institute of Chemical Materials, China Academy of Engineering Physics, Mianyang, Sichuan 621000, China
| | - Junnan Wu
- Institute of Chemical Materials, China Academy of Engineering Physics, Mianyang, Sichuan 621000, China
| | - Qinghua Zhang
- School of Astronautics, Northwestern Polytechnic University, Xi'an, Shaanxi 710072, China
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2
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Hou X, Yu L, He C, Wu K. Group and
group‐interaction
contribution method for estimating the melting temperatures of deep eutectic solvents. AIChE J 2021. [DOI: 10.1002/aic.17408] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xiao‐Jing Hou
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, College of Chemical and Biological Engineering Zhejiang University Hangzhou China
- Institute of Zhejiang University‐Quzhou Quzhou China
| | - Liu‐Ying Yu
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, College of Chemical and Biological Engineering Zhejiang University Hangzhou China
- Institute of Zhejiang University‐Quzhou Quzhou China
| | - Chao‐Hong He
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, College of Chemical and Biological Engineering Zhejiang University Hangzhou China
- Institute of Zhejiang University‐Quzhou Quzhou China
| | - Ke‐Jun Wu
- Zhejiang Provincial Key Laboratory of Advanced Chemical Engineering Manufacture Technology, College of Chemical and Biological Engineering Zhejiang University Hangzhou China
- Institute of Zhejiang University‐Quzhou Quzhou China
- School of Chemical and Process Engineering University of Leeds Leeds UK
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3
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Gani R. Group contribution-based property estimation methods: advances and perspectives. Curr Opin Chem Eng 2019. [DOI: 10.1016/j.coche.2019.04.007] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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4
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Jhamb S, Liang X, Gani R, Hukkerikar AS. Estimation of physical properties of amino acids by group-contribution method. Chem Eng Sci 2018. [DOI: 10.1016/j.ces.2017.09.019] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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5
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Palma-Flores O, Flores-Tlacuahuac A, Canseco-Melchor G. Optimal molecular design of working fluids for sustainable low-temperature energy recovery. Comput Chem Eng 2015. [DOI: 10.1016/j.compchemeng.2014.04.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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6
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Admire B, Lian B, Yalkowsky SH. Estimating the physicochemical properties of polyhalogenated aromatic and aliphatic compounds using UPPER: part 1. Boiling point and melting point. CHEMOSPHERE 2015; 119:1436-1440. [PMID: 25022475 DOI: 10.1016/j.chemosphere.2014.06.053] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Revised: 06/13/2014] [Accepted: 06/15/2014] [Indexed: 06/03/2023]
Abstract
The UPPER (Unified Physicochemical Property Estimation Relationships) model uses enthalpic and entropic parameters to estimate 20 biologically relevant properties of organic compounds. The model has been validated by Lian and Yalkowsky on a data set of 700 hydrocarbons. The aim of this work is to expand the UPPER model to estimate the boiling and melting points of polyhalogenated compounds. In this work, 19 new group descriptors are defined and used to predict the transition temperatures of an additional 1288 compounds. The boiling points of 808 and the melting points of 742 polyhalogenated compounds are predicted with average absolute errors of 13.56 K and 25.85 K, respectively.
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Affiliation(s)
- Brittany Admire
- College of Pharmacy, University of Arizona, 1703 E. Mabel St., Tucson, AZ 85721, USA.
| | - Bo Lian
- College of Pharmacy, University of Arizona, 1703 E. Mabel St., Tucson, AZ 85721, USA
| | - Samuel H Yalkowsky
- College of Pharmacy, University of Arizona, 1703 E. Mabel St., Tucson, AZ 85721, USA
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7
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Keshavarz MH, Esmaeilpour K, Oftadeh M, Abadi YH. Assessment of two new nitrogen-rich tetrazine derivatives as high performance and safe energetic compounds. RSC Adv 2015. [DOI: 10.1039/c5ra13377g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
This work introduces two novel nitrogen-rich derivatives of tetrazine, i.e. 1,2-bis (6-nitro-1,2,4,5-tetrazin-3-yl)diazene and 1,2-bis(6-nitro-1,2,4,5-tetrazin-3-yl)hydrazine, as high performance and safe energetic compounds.
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Affiliation(s)
- M. H. Keshavarz
- Department of Chemistry
- Malek-ashtar University of Technology
- Islamic Republic of Iran
| | - K. Esmaeilpour
- Department of Chemistry
- Malek-ashtar University of Technology
- Islamic Republic of Iran
| | - M. Oftadeh
- Chemistry Department
- Payame Noor University University
- Esfahan
- Iran
| | - Y. Hayat Abadi
- Department of Chemistry
- Malek-ashtar University of Technology
- Islamic Republic of Iran
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8
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Li XH, Ju XH. Molecular Dynamic Simulation of Melting Points of Trans-1,4,5,8-tetranitro-1,4,5,8-tetraazadacalin (TNAD) with Some Propellants. CHINESE J CHEM PHYS 2014. [DOI: 10.1063/1674-0068/27/04/412-418] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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9
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Khozani MH, Keshavarz MH, Nazari B, Mohebbi M. Simple approach for prediction of melting points of organic molecules containing hazardous peroxide bonds. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2014. [DOI: 10.1007/s13738-014-0516-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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10
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Bagheri M, Bakhtiari A, Jaberi M. Estimation of Formation Enthalpies of Organic Pollutants from a New Structural Group Contribution Method. Chin J Chem Eng 2013. [DOI: 10.1016/s1004-9541(13)60517-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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11
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Harini M, Adhikari J, Rani KY. A Review on Property Estimation Methods and Computational Schemes for Rational Solvent Design: A Focus on Pharmaceuticals. Ind Eng Chem Res 2013. [DOI: 10.1021/ie301329y] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M. Harini
- Department of Chemical
Engineering, Indian Institute of Technology, Bombay, Mumbai-400076, India
| | - Jhumpa Adhikari
- Department of Chemical
Engineering, Indian Institute of Technology, Bombay, Mumbai-400076, India
| | - K. Yamuna Rani
- Chemical Engineering Division, Indian Institute of Chemical Technology, Hyderabad-500607,
India
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12
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Sevillano DM, van der Wielen LAM, Trifunovic O, Ottens M. Model Comparison for the Prediction of the Solubility of Green Tea Catechins in Ethanol/Water Mixtures. Ind Eng Chem Res 2013. [DOI: 10.1021/ie400113t] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David Méndez Sevillano
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628
BC, Delft, The Netherlands
| | - Luuk A. M. van der Wielen
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628
BC, Delft, The Netherlands
| | - Olivera Trifunovic
- Unilever R&D Vlaardingen, Olivier van Noortlaan 120, 3133 AT Vlaardingen, The Netherlands
| | - Marcel Ottens
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628
BC, Delft, The Netherlands
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