Fuzzy control of bioprocess

Modern Sensor Tools and Techniques for Monitoring, Controlling, and Improving Cell Culture Processes

The growing biopharmaceutical industry has reached a level of maturity that allows for the monitoring of numerous key variables for both process characterization and outcome predictions. Sensors were historically used in order to maintain an optimal environment within the reactor to optimize process performance. However, technological innovation has pushed towards on-line in situ continuous monitoring of quality attributes that could previously only be estimated off-line. These new sensing technologies when coupled with software models have shown promise for unique fingerprinting, smart process control, outcome improvement, and prediction. All this can be done without requiring invasive sampling or intervention on the system. In this paper, the state-of-the-art sensing technologies and their applications in the context of cell culture monitoring are reviewed with emphasis on the coming push towards industry 4.0 and smart manufacturing within the biopharmaceutical sector. Additionally, perspectives as to how this can be leveraged to improve both understanding and outcomes of cell culture processes are discussed.

An Adaptive Fuzzy Feedforward-Feedback Control System Applied to a Saccharification Process

In industrial bioprocess control, disturbance sources typically influences process variable regulation. These disturbances may reduce a system control performance or even affect the final bioproduct quality. Therefore, feedforward control is desired because it anticipates the effects caused by these disturbances in an attempt to keep the process variable at the setpoint value. However, designing a feedforward control law requires process modeling, which can be a tough task when dealing with bioprocesses that are intrinsically nonlinear and multivariable systems. Thus, an adaptive feedforward control law or other advanced control system is needed for satisfactory disturbance rejection. For this reason, a general fuzzy feedforward control system is proposed in this paper to replace the classical feedforward control, making it easier to implement the feedforward control action by avoiding nonlinear and multivariable process modeling. The adaptive fuzzy feedforward-feedback (A4FB) system was applied to a product concentration control loop in an enzymatic reactor, to reject disturbances caused by variations in the substrate and enzymatic solutions feed concentration. The results showed that the A4FB controller rejected much more disturbance effects than classical feedforward control law, demonstrating its advantage, supported by not only its simple implementation, but also its improved disturbance rejection.

Combinational risk factors of metabolic syndrome identified by fuzzy neural network analysis of health-check data

Background

Lifestyle-related diseases represented by metabolic syndrome develop as results of complex interaction. By using health check-up data from two large studies collected during a long-term follow-up, we searched for risk factors associated with the development of metabolic syndrome.

Methods

In our original study, we selected 77 case subjects who developed metabolic syndrome during the follow-up and 152 healthy control subjects who were free of lifestyle-related risk components from among 1803 Japanese male employees. In a replication study, we selected 2196 case subjects and 2196 healthy control subjects from among 31343 other Japanese male employees. By means of a bioinformatics approach using a fuzzy neural network (FNN), we searched any significant combinations that are associated with MetS. To ensure that the risk combination selected by FNN analysis was statistically reliable, we performed logistic regression analysis including adjustment.

Results

We selected a combination of an elevated level of γ-glutamyltranspeptidase (γ-GTP) and an elevated white blood cell (WBC) count as the most significant combination of risk factors for the development of metabolic syndrome. The FNN also identified the same tendency in a replication study. The clinical characteristics of γ-GTP level and WBC count were statistically significant even after adjustment, confirming that the results obtained from the fuzzy neural network are reasonable. Correlation ratio showed that an elevated level of γ-GTP is associated with habitual drinking of alcohol and a high WBC count is associated with habitual smoking.

Conclusions

This result obtained by fuzzy neural network analysis of health check-up data from large long-term studies can be useful in providing a personalized novel diagnostic and therapeutic method involving the γ-GTP level and the WBC count.

Novel Strategy for Protein Exploration: High-throughput Screening Assisted with Fuzzy Neural Network

To engineer proteins with desirable characteristics from a naturally occurring protein, high-throughput screening (HTS) combined with directed evolutional approach is the essential technology. However, most HTS techniques are simple positive screenings. The information obtained from the positive candidates is used only as results but rarely as clues for understanding the structural rules, which may explain the protein activity. In here, we have attempted to establish a novel strategy for exploring functional proteins associated with computational analysis. As a model case, we explored lipases with inverted enantioselectivity for a substrate p-nitrophenyl 3-phenylbutyrate from the wild-type lipase of Burkhorderia cepacia KWI-56, which is originally selective for (S)-configuration of the substrate. Data from our previous work on (R)-enantioselective lipase screening were applied to fuzzy neural network (FNN), bioinformatic algorithm, to extract guidelines for screening and engineering processes to be followed. FNN has an advantageous feature of extracting hidden rules that lie between sequences of variants and their enzyme activity to gain high prediction accuracy. Without any prior knowledge, FNN predicted a rule indicating that "size at position L167," among four positions (L17, F119, L167, and L266) in the substrate binding core region, is the most influential factor for obtaining lipase with inverted (R)-enantioselectivity. Based on the guidelines obtained, newly engineered novel variants, which were not found in the actual screening, were experimentally proven to gain high (R)-enantioselectivity by engineering the size at position L167. We also designed and assayed two novel variants, namely FIGV (L17F, F119I, L167G, and L266V) and FFGI (L17F, L167G, and L266I), which were compatible with the guideline obtained from FNN analysis, and confirmed that these designed lipases could acquire high inverted enantioselectivity. The results have shown that with the aid of bioinformatic analysis, high-throughput screening can expand its potential for exploring vast combinatorial sequence spaces of proteins.

Fuzzy modeling and control of biological processes

Fuzzy modeling and control based on the fuzzy sets theory have been used in the biotechnology field for the last two decades. Recent studies on fuzzy modeling and control of various biological processes are reviewed. In addition, five applications of fuzzy control to industrial biological processes are summarized, compared and discussed in terms of the system features, control purpose, input and output variables, development of fuzzy rules and effectiveness. Fuzzy modeling and control are regarded as promising methods for automating the bioprocesses in which experienced operators play significant roles in their successful operation.