1
|
Chen L, Feng C, Wang R, Nong X, Deng X, Chen X, Yu H. A chromosome-level genome assembly of the pollinating fig wasp Valisia javana. DNA Res 2022; 29:6589890. [PMID: 35595238 PMCID: PMC9160881 DOI: 10.1093/dnares/dsac014] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Indexed: 12/02/2022] Open
Abstract
Fig wasp has always been thought the species-specific pollinator for their host fig (Moraceae, Ficus) and constitute a model system with its host to study co-evolution and co-speciation. The availability of a high-quality genome will help to further reveal the mechanisms underlying these characteristics. Here, we present a high-quality chromosome-level genome for Valisa javana developed by a combination of PacBio long-read and Illumina short-read. The assembled genome size is 296.34 Mb from 13 contigs with a contig N50 length of 26.76 kb. Comparative genomic analysis revealed expanded and positively selected genes related to biological features that aid fig wasps living in syconium of its highly specific host. Protein-coding genes associated with chemosensory, detoxification and venom genes were identified. Several differentially expressed genes in transcriptome data of V. javana between odor-stimulated samples and the controls have been identified in some olfactory signal transduction pathways, e.g. olfactory transduction, cAMP, cGMP-PKG, Calcim, Ras and Rap1. This study provides a valuable genomic resource for a fig wasp, and sheds insight into further revealing the mechanisms underlying their adaptive traits to their hosts in different places and co-speciation with their host.
Collapse
Affiliation(s)
- Lianfu Chen
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
| | - Chao Feng
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
| | - Rong Wang
- School of Ecological and Environmental Sciences, Tiantong National Station for Forest Ecosystem Research, East China Normal University , Shanghai 200241, China
| | - Xiaojue Nong
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
| | - Xiaoxia Deng
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
| | - Xiaoyong Chen
- School of Ecological and Environmental Sciences, Tiantong National Station for Forest Ecosystem Research, East China Normal University , Shanghai 200241, China
| | - Hui Yu
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, The Chinese Academy of Sciences , Guangzhou 510650, China
| |
Collapse
|
2
|
Zhang X, Dunn DW, Wen X, Sun B, Wang R. Differential deployment of sanctioning mechanisms by male and female host trees in a gynodioecious fig–wasp mutualism. Ecology 2019; 100:e02597. [DOI: 10.1002/ecy.2597] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 11/09/2018] [Accepted: 12/03/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Xiao‐Wei Zhang
- Centre for Ecological and Environmental Sciences Northwest Polytechnical University Xi'an 710072 China
| | - Derek W. Dunn
- College of Life Sciences Northwest University Xi'an Shaanxi 710069 China
| | - Xiao‐Lan Wen
- Kunming Institute of Zoology Chinese Academy of Sciences Kunming Yunnan 650223 China
| | - Bao‐Fa Sun
- CAS Key Laboratory of Genetics and Precision Medicine Beijing Institute of Genomics Chinese Academy of Sciences Beijing 100101 China
| | - Rui‐Wu Wang
- Centre for Ecological and Environmental Sciences Northwest Polytechnical University Xi'an 710072 China
| |
Collapse
|
3
|
Host–parasitoid development and survival strategies in a non-pollinating fig wasp community. ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY 2018. [DOI: 10.1016/j.actao.2017.04.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
4
|
Comparative profiling of microRNAs and their association with sexual dimorphism in the fig wasp Ceratosolen solmsi. Gene 2017; 633:54-60. [DOI: 10.1016/j.gene.2017.08.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 08/25/2017] [Accepted: 08/29/2017] [Indexed: 12/17/2022]
|
5
|
|