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Neverov AM, Panchin AY, Mikhailov KV, Batueva MD, Aleoshin VV, Panchin YV. Apoptotic gene loss in Cnidaria is associated with transition to parasitism. Sci Rep 2023; 13:8015. [PMID: 37198195 PMCID: PMC10192318 DOI: 10.1038/s41598-023-34248-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 04/26/2023] [Indexed: 05/19/2023] Open
Abstract
The phylum Cnidaria consists of several morphologically diverse classes including Anthozoa, Cubozoa, Hydrozoa, Polypodiozoa, Scyphozoa, Staurozoa, and Myxozoa. Myxozoa comprises two subclasses of obligate parasites-Myxosporea and Malacosporea, which demonstrate various degrees of simplification. Myxosporea were previously reported to lack the majority of core protein domains of apoptotic proteins including caspases, Bcl-2, and APAF-1 homologs. Other sequenced Cnidaria, including the parasite Polypodium hydriforme from Polypodiozoa do not share this genetic feature. Whether this loss of core apoptotic proteins is unique to Myxosporea or also present in its sister subclass Malacosporea was not previously investigated. We show that the presence of core apoptotic proteins gradually diminishes from free-living Cnidaria to Polypodium to Malacosporea to Myxosporea. This observation does not favor the hypothesis of catastrophic simplification of Myxosporea at the genetic level, but rather supports a stepwise adaptation to parasitism that likely started from early parasitic ancestors that gave rise to Myxozoa.
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Affiliation(s)
- Alexander M Neverov
- Department of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russian Federation, 119234.
| | - Alexander Y Panchin
- Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russian Federation, 127994
| | - Kirill V Mikhailov
- Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russian Federation, 127994
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskiye Gory 1-40, Moscow, Russian Federation, 119991
| | - Marina D Batueva
- Institute of General and Experimental Biology Siberian Branch of Russian Academy of Sciences, Ulan-Ude, Russian Federation, 670047
| | - Vladimir V Aleoshin
- Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russian Federation, 127994
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskiye Gory 1-40, Moscow, Russian Federation, 119991
| | - Yuri V Panchin
- Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russian Federation, 127994
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskiye Gory 1-40, Moscow, Russian Federation, 119991
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Oredalen TJ, Saebø M, Mo TA. Patterns of Tetracapsuloides bryosalmonae infection of three salmonid species in large, deep Norwegian lakes. JOURNAL OF FISH DISEASES 2022; 45:185-202. [PMID: 34747501 DOI: 10.1111/jfd.13548] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 10/22/2021] [Indexed: 06/13/2023]
Abstract
Proliferative kidney disease (PKD), caused by the myxozoan endoparasite Tetracapsuloides bryosalmonae, is of serious ecological and economical concern to wild and farmed salmonids. Wild salmonid populations have declined due to PKD, primarily in rivers, in Europe and North America. Deep lakes are also important habitats for salmonids, and this work aimed to investigate parasite presence in five deep Norwegian lakes. Kidney samples from three salmonid species from deep lakes were collected and tested using real-time PCR to detect PKD parasite presence. We present the first detection of T. bryosalmonae in European whitefish in Norway for the first time, as well as the first published documentation of the parasite in kidneys of Arctic charr, brown trout and whitefish in four lakes. The observed prevalence of the parasite was higher in populations of brown trout than of Arctic charr and whitefish. The parasite was detected in farmed, but not in wild, charr in one lake. This suggests a possible link with a depth of fish habitat and fewer T. bryosalmonae-infected and PKD-affected fish. Towards a warmer climate, cold hypolimnion in deep lakes may act as a refuge for wild salmonids, while cold deep water may be used to control PKD in farmed salmonids.
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Affiliation(s)
- Tone Jøran Oredalen
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway (USN), Boe in Telemark, Norway
| | - Mona Saebø
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway (USN), Boe in Telemark, Norway
| | - Tor Atle Mo
- Norwegian Institute for Nature Research (NINA), Oslo, Norway
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Koch TL, Hauser F, Grimmelikhuijzen CJP. An evolutionary genomics view on neuropeptide genes in Hydrozoa and Endocnidozoa (Myxozoa). BMC Genomics 2021; 22:862. [PMID: 34847889 PMCID: PMC8638164 DOI: 10.1186/s12864-021-08091-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Accepted: 10/12/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The animal phylum Cnidaria consists of six classes or subphyla: Hydrozoa, Scyphozoa, Cubozoa, Staurozoa, Anthozoa, and Endocnidozoa. Cnidarians have an early evolutionary origin, diverging before the emergence of the Bilateria. Extant members from this phylum, therefore, are important resources for understanding the evolution of the nervous system. Cnidarian nervous systems are strongly peptidergic. Using genomics, we have recently shown that three neuropeptide families (the X1PRX2amides, GRFamides, and GLWamides) are wide-spread in four (Scyphozoa, Cubozoa, Staurozoa, Anthozoa) out of six cnidarian classes or subphyla, suggesting that these three neuropeptide families emerged in the common cnidarian ancestor. In the current paper, we analyze the remaining cnidarian class, Hydrozoa, and the subphylum Endocnidozoa, to make firm conclusions about the evolution of neuropeptide genes in Cnidaria. RESULTS We analyzed sixteen hydrozoan species with a sequenced genome or transcriptome, using a recently developed software program for discovering neuropeptide genes. These species belonged to various hydrozoan subclasses and orders, among them the laboratory models Hydra, Hydractinia, and Clytia. We found that each species contained three to five neuropeptide families. A common feature for all hydrozoans was that they contained genes coding for (i) X1PRX2amide peptides, (ii) GRFamide peptides, and (iii) GLWamide peptides. These results support our previous conclusions that these three neuropeptide families evolved early in evolution. In addition to these three neuropeptide families, hydrozoans expressed up to two other neuropeptide gene families, which, however, were only occurring in certain animal groups. Endocnidozoa (Myxozoa) are microscopically small endoparasites, which are strongly reduced. For long, it was unknown to which phylum these parasites belonged, but recently they have been associated with cnidarians. We analyzed nine endocnidozoan species and found that two of them (Polypodium hydriforme and Buddenbrockia plumatellae) expressed neuropeptide genes. These genes coded for neuropeptides belonging to the GRFamide and GLWamide families with structures closely resembling them from hydrozoans. CONCLUSIONS We found X1PRX2amide, GRFamide, and GLWamide peptides in all species belonging to the Hydrozoa, confirming that these peptides originated in the common cnidarian ancestor. In addition, we discovered GRFamide and GLWamide peptide genes in some members of the Endocnidozoa, thereby linking these parasites to Hydrozoa.
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Affiliation(s)
- Thomas L. Koch
- Section for Cell and Neurobiology, Department of Biology, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark
| | - Frank Hauser
- Section for Cell and Neurobiology, Department of Biology, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark
| | - Cornelis J. P. Grimmelikhuijzen
- Section for Cell and Neurobiology, Department of Biology, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark
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Naldoni J, Okamura B, Hartikainen H, Corrêa LL, Adriano EA. Broad but restricted detection of malacosporeans in a Neotropical cradle of diversification. Parasitology 2021; 148:511-518. [PMID: 33298205 PMCID: PMC10950377 DOI: 10.1017/s0031182020002322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Revised: 12/01/2020] [Accepted: 12/02/2020] [Indexed: 11/07/2022]
Abstract
This study undertook the first investigation of malacosporean infections in Neotropical fish. We used polymerase chain reaction detection with a primer set generally targeting known malacosporeans to assay for infection in the kidney of 146 fish in 21 species belonging to 12 families collected from two areas in the Amazon Basin. Infections were found in 13 fish variously belonging to seven species in six families and included the first identification of a malacosporean infection in cartilaginous fish (a freshwater stingray). Based on ssrDNA, all infections represented a single Buddenbrockia species (Buddenbrockia sp. E) that demonstrates an exceptionally broad range of fish species infected, and countered our expectations of high Neotropical malacosporean diversity. Infections were characterized at varying and often high prevalences in fish species but sample sizes were small. Ascertaining whether highly divergent malacosporeans have not been detected by current primers, and more comprehensive sampling may reveal whether malacosporeans are truly as species poor in the Amazon Basin as present data suggest. Our results prompt speculations about evolutionary scenarios including introduction via marine incursions and patterns of host use over time.
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Affiliation(s)
- Juliana Naldoni
- Departamento de Ciências Biológicas, Universidade Federal de São Paulo (UNIFESP), Diadema, SP, Brazil
| | - Beth Okamura
- Department of Life Sciences, Natural History Museum, Cromwell Road, LondonSW7 5BD, UK
| | - Hanna Hartikainen
- School of Life Sciences, University of Nottingham, University Park, NottinghamNG7 2RD, UK
| | - Lincoln L. Corrêa
- Instituto de Ciências e Tecnologia das Águas, Universidade Federal do Oeste do Pará (UFOPA), Santarém, PA, Brazil
| | - Edson A. Adriano
- Departamento de Ciências Biológicas, Universidade Federal de São Paulo (UNIFESP), Diadema, SP, Brazil
- Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP, Brazil
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Hutchins PR, Sepulveda AJ, Hartikainen H, Staigmiller KD, Opitz ST, Yamamoto RM, Huttinger A, Cordes RJ, Weiss T, Hopper LR, Purcell MK, Okamura B. Exploration of the 2016 Yellowstone River fish kill and proliferative kidney disease in wild fish populations. Ecosphere 2021. [DOI: 10.1002/ecs2.3436] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Affiliation(s)
- Patrick R. Hutchins
- Northern Rocky Mountain Science Center U.S. Geological Survey 2327 University Way Suite 2 Bozeman Montana59715USA
| | - Adam J. Sepulveda
- Northern Rocky Mountain Science Center U.S. Geological Survey 2327 University Way Suite 2 Bozeman Montana59715USA
| | - Hanna Hartikainen
- School of Life Sciences University of Nottingham University Park NottinghamNG7 2RDUK
| | - Ken D. Staigmiller
- Fish Health Lab Montana Fish Wildlife and Parks 4801 Giant Springs Road Great Falls Montana59405USA
| | - Scott T. Opitz
- Montana Fish Wildlife and Parks 1400 South 19th Avenue Bozeman Montana59718USA
| | - Renee M. Yamamoto
- Bozeman Fish Health Center U.S. Fish and Wildlife Service 1805 South 22nd Avenue Suite 1 Bozeman Montana59718USA
| | - Amberly Huttinger
- Bozeman Fish Health Center U.S. Fish and Wildlife Service 1805 South 22nd Avenue Suite 1 Bozeman Montana59718USA
| | - Rick J. Cordes
- Bozeman Fish Health Center U.S. Fish and Wildlife Service 1805 South 22nd Avenue Suite 1 Bozeman Montana59718USA
| | - Tammy Weiss
- Bozeman Fish Health Center U.S. Fish and Wildlife Service 1805 South 22nd Avenue Suite 1 Bozeman Montana59718USA
| | - Lacey R. Hopper
- Bozeman Fish Health Center U.S. Fish and Wildlife Service 1805 South 22nd Avenue Suite 1 Bozeman Montana59718USA
| | - Maureen K. Purcell
- Western Fisheries Research Center U.S. Geological Survey 6505 NE 65th Street Seattle Washington98115USA
| | - Beth Okamura
- Department of Life Sciences Natural History Museum Cromwell Road LondonSW7 5BDUK
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Ruggeri P, Naldoni J, Hartikainen H, Okamura B. PCR-RFLP: a targeted method to reveal host specific malacosporean infection profiles (Cnidaria: Myxozoa: Malacosporea). DISEASES OF AQUATIC ORGANISMS 2020; 141:91-101. [PMID: 32940254 DOI: 10.3354/dao03525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Malacosporeans are a group of endoparasitic cnidarians (Myxozoa) that use freshwater bryozoans and fish as final and intermediate hosts, respectively. The malacosporean Tetracapsuloides bryosalmonae causes proliferative kidney disease (PKD), an emerging disease in aquaculture and wild fish populations, including threatened salmonids in Europe and the USA. Mixed infections of malacosporeans are often encountered, and a monitoring tool for screening of multiple malacosporean species in either their fish or bryozoan hosts is therefore desirable. We describe an inexpensive method that combines PCR amplification of the partial 18S rRNA gene (~260 bp) and a single-step restriction fragment length polymorphism (RFLP) method for identification of 10 malacosporean lineages and species. We demonstrate and test this methodology on a set of DNA extracted from malacosporeans infecting fish kidney and tissues sampled from bryozoan colonies and compare the results with Sanger sequencing of the same parasite DNA isolates. The PCR-RFLP and Sanger sequencing methods agreed in 100% of cases. The PCR-RFLP method offers a number of opportunities, including screening large panels of host tissue samples to gain insights into infection patterns, characterizing mixed infections, and confirming highly pathogenic T. bryosalmonae infections. The method can also be further refined as new sequence data become available for malacosporeans.
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Affiliation(s)
- Paolo Ruggeri
- Natural History Museum, Cromwell Rd, Kensington, London SW7 5BD, UK
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Guo Q, Liu Y, Zhai Y, Gu Z. A fast and effective method for dissecting parasitic spores: myxozoans as an example. J Exp Biol 2020:jeb.214916. [PMID: 34005559 DOI: 10.1242/jeb.214916] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 03/27/2020] [Indexed: 12/31/2022]
Abstract
Disassembling the parasitic spores and acquiring the main subunits is a prerequisite for deep understanding of the basic biology of parasites. Herein we present a fast and efficient method to dissect the myxospores in a few steps, which mainly involved sonication, sucrose density gradient and Percoll density gradient. We tested our method on three myxozoans species and demonstrated this method allows the dismembering of myxospores, isolation of intact and clean nematocysts and shell valves within 2h by low-cost. This new tool will facilitate subsequent analyses and enable a better understanding of the ecological and evolutionary significance of parasitic spores.
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Affiliation(s)
- Qingxiang Guo
- Department of Aquatic Animal Medicine, College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei province, 430070, PR China
| | - Yang Liu
- Department of Aquatic Animal Medicine, College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei province, 430070, PR China
- Hubei Engineering Technology Research Center for Aquatic Animal Diseases Control and Prevention, Wuhan, 430070, PR China
| | - Yanhua Zhai
- Department of Aquatic Animal Medicine, College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei province, 430070, PR China
- Hubei Engineering Technology Research Center for Aquatic Animal Diseases Control and Prevention, Wuhan, 430070, PR China
| | - Zemao Gu
- Department of Aquatic Animal Medicine, College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei province, 430070, PR China
- Hubei Engineering Technology Research Center for Aquatic Animal Diseases Control and Prevention, Wuhan, 430070, PR China
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