Genetics, environment and bovine respiratory disease

Scoping Review on Risk Factors and Methods for the Prevention of Bovine Respiratory Disease Applicable to Cow–Calf Operations

Simple Summary

Bovine respiratory disease (BRD) is common in cattle populations and has been named as one of three diseases where antibiotics are most frequently used in cow–calf operations in California. Antibiotics are typically used to treat or prevent the disease, but recent concerns about antibiotic resistance of pathogens in animals or spreading from animals to people have led to the call for more judicious use of these drugs. The present review summarizes the English scientific literature on articles about risk factors for the disease as well as ways to prevent BRD that are applicable to cow–calf operations. Numerous management and animal factors have been identified as increasing the risk for BRD. Vaccinations, metaphylactic use of antibiotics, and feed supplements are areas of research into the prevention of BRD. Genetics have also been explored to determine the heritability of BRD resistance. While vaccinations and metaphylactic use of antibiotics have been evaluated in multiple systematic reviews and meta-analyses, these types of summaries are missing for commonly studied feed supplements, such as yeast and trace minerals, and the use of nitric oxide releasing substance to prevent BRD. Further, it would be beneficial to summarize the knowledge on management related risk factors in literature reviews.

Abstract

The presented scoping review summarizes the available research evidence and identifies gaps in knowledge for bovine respiratory disease (BRD) prevention. Published literature on BRD from 1990 to April 2021 was searched in online databases, including Medline, CAB Abstracts, Scopus, Biosis, and Searchable Proceedings of Animal Conferences. Citations were systematically evaluated in a three-stage approach using commercial software and summarized in a scoping review format. A total of 265 publications were included in this review with herd/farm management (27.9%) as the most prevalent factors studied, followed by metaphylaxis (24.5%), vaccinations (24.1%), diet formulations, and nutritional supplementations (17.7%), animal characteristics (10.2%), and less common interventions and risk factors (6.4%). A high proportion of studies under herd/farm management (73%), metaphylaxis (86%), vaccinations (70%), animal characteristics (78%), and less common interventions and risk factors (59%) showed either significant effects on reducing BRD morbidity or significant differences of BRD between treatments. However, diet and nutritional supplementations reduced BRD only in 30% of research publications. Most studies on BRD were performed in feedlot populations, and more studies in cow–calf populations are needed. We further suggest meta-analyses on the use of yeast and trace mineral supplementation, and nitric oxide-releasing solution for BRD prevention.

Effects of forage feeding on rumen fermentation, plasma metabolites, and hormones in Holstein calves during pre- and postweaning periods1

Recent studies have suggested that the amount of forage intake by calves around the time of weaning could affect ruminal pH levels. Several studies have also proposed that subacute ruminal acidosis in mature cows is a risk factor for various metabolic disorders and production diseases. In this study, we examined the effects of forage feeding on ruminal pH, ruminal fermentation, rumen lipopolysaccharide (LPS) concentration, plasma metabolites, and hormonal concentrations in calves during pre- and postweaning periods. Sixteen male Holstein calves were used. At 7 wk of age, calves were randomly assigned to one of two dietary treatments: calves in the HAY group (n = 8) were fed starter with forage, and those in the CON group (n = 8) were fed starter without any forage. All calves were weaned at 8 wk of age. The amounts of starter and mixed hay were gradually increased until the end of the experiment (age, 11 wk). Ruminal pH was measured continuously every 10 min using an indwelling sensor. Rumen fluid and peripheral blood samples were obtained prior to morning feedings at -1, 0, 1, and 3 wk after weaning. Compared with the HAY group, in the CON group, the average daily ruminal pH was lower (P < 0.05) and the duration of ruminal pH values below 5.6 was longer (P < 0.05). Regarding ruminal VFA profiles, compared with the HAY group, the CON group had lower (P < 0.05) acetate to propionate ratios at 1 and 3 wk after weaning. Rumen LPS concentrations tended to be higher (P < 0.1) in the CON group than in the HAY group; however, concentrations of LPS-binding protein, haptoglobin, and serum amyloid A in the peripheral blood did not differ significantly. Plasma aspartate aminotransferase and alkaline phosphatase levels were markedly higher (P < 0.05) in the CON group than in the HAY group at 1 and 3 wk after weaning. There was a linear decrease in plasma growth hormone (GH) levels in the CON group after the start of the experiment, and its concentrations were lower (P < 0.05) in the CON group than in the HAY group at 0 and 3 wk after weaning. The results indicated that forage provision during pre- and postweaning periods helped prevent decrease in ruminal pH, change in ruminal fermentation, and liver alteration, and helped maintain plasma GH levels, which suggests that calves around the time of weaning need forage intake with starter to maintain proper metabolic and hormonal functions.

Effects of management practices, animal transport and barn climate on animal health and antimicrobial use in Swiss veal calf operations

To assess the effects of transport, management factors and barn climate on calf health, 43 Swiss veal farms (11 large farms fattening ≥100 calves and 32 small farms fattening >20 but <100 calves per year) were monitored in a prospective cohort study over a period of one year. Detailed questionnaires on farm structure, management, housing system and animal health were filled out with the farmers during bimonthly visits, and barn temperature, humidity, ammonia and CO₂ concentrations were measured. Temperature and humidity were also measured continuously over 72 h once each in winter and summer. In addition, calf purchase and transport from birth farm to fattening unit were documented by the farmers, and the study team accompanied one transport per farm whenever possible. Antimicrobial treatment incidence was calculated from the used daily dose (TI_UDD). Risk factors for mortality, average daily weight gain (ADG) and antimicrobial use, as well as factors related to transport and barn climate measures were evaluated with mixed regression models. The overall mortality rate was 5.1% (6.2% in large herds and 3.1% in small ones). Identified risk factors for mortality >3% included a lower number of calves fattened per year and a good hygiene of the feeder. This surprising result was likely due to the fact that the threshold of 3% mortality was rather exceeded in smaller farms. Furthemore, higher temperature variation (range between maximal and minimal temperature over 3 measurement days) in the calf pen was associated with mortality >3% in the univariable analysis. The overall mean ADG was 1.40 ± 0.16 kg. Calf purchase was significantly associated with decreased ADG. The median overall TI_UDD was eight daily doses per calf and year (2.1 in small farms and 26 in large farms, respectively); the main indication for treatment was respiratory disease (81.1%). Risk factors for increased TI were no quarantine upon arrival, access to an outside pen, higher numbers of calves per drinking nipple, mechanical ventilation, vaccination against bovine respiratory disease, and a maximum ammonia value >10 ppm in the calf pen. In addition, a higher number of birth farms and calf purchase from markets were associated with increased TI in the univariable analysis. The identified risk factors associated with increased TI and mortality and with decreased ADG should be addressed in priority in veal calf operations to improve calf health and reduce antimicrobial use.

Genome-wide association study of lung lesions and pleurisy in New Zealand lambs

Pneumonia is an important issue for sheep production, leading to reduced growth rate and a predisposition to pleurisy. The objective of this study was to identify loci associated with pneumonic lesions and pleurisy in New Zealand progeny test lambs. The lungs from 3,572 progeny-test lambs were scored for presence and severity of pneumonic lesions and pleurisy at slaughter. Animals were genotyped using the Illumina Ovine Infinium HD SNP BeadChip (606,006 markers). The heritability of lung lesion score and pleurisy were calculated using the genomic relationship matrix, and genome-wide association analyses were conducted using EMMAX and haplotype trend regression. At slaughter, 35% of lambs had pneumonic lesions, with 9% showing lesions on more than half of any individual lobe. The number of lambs recorded as having pleurisy by the processing plants was 9%. Heritability estimates for pneumonic lesions and pleurisy scores adjusted for heteroscedasticity (CPSa and PLEURa) were 0.16 (± 0.03) and 0.05 (± 0.02), respectively. Five single-nucleotide polymorphisms (SNPs) were significantly associated with pneumonic lesions at the genome-wide level, and additional 37 SNPs were suggestively significant. Four SNPs were significantly associated with pleurisy, with an additional 11 SNPs reaching the suggestive level of significance. There were no regions that overlapped between the 2 traits. Multiple SNPs were in regions that contained genes involved in either the DNA damage response or the innate immune response, including several that had previously been reported to have associations with respiratory disease. Both EMMAX and HTR analyses of pleurisy data showed a significant peak on chromosome 2, located downstream from the transcription factor SP3. SP3 activates or suppresses the expression of numerous genes, including several genes with known functions in the immune system. This study identified several SNPs associated with genes involved in both the innate immune response and the response to DNA damage that are associated with pneumonic lesions and pleurisy in lambs at slaughter. Additionally, the identification in sheep of several SNPs within genes that have previously been associated with the respiratory system in cattle, pigs, rats, and mice indicates that there may be common pathways that underlie the response to invasion by respiratory pathogens in multiple species.

Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves

The objective of this cross-sectional study was to estimate the prevalence of bovine respiratory disease (BRD) in California preweaned dairy calves and identify management practices that are associated with BRD. A convenience sample of 100 dairies in the 3 distinct dairy regions of California was surveyed. Regions evaluated were Northern California (NCA), northern San Joaquin Valley (NSJV), and greater Southern California (GSCA). A questionnaire on calf management practices and demographic information was administered via in-person interviews at each dairy and a random sample of preweaned calves was evaluated using the California BRD scoring system on the same day. Prevalence of BRD varied between the 3 dairy regions: 9.30% in NCA, 4.51% in NSJV, and 7.35% in GSCA. Breed was not associated with BRD prevalence at the statewide level, but differences in prevalence were observed between breeds across the regions with a higher prevalence in NCA for Jerseys and in GSCA for Holsteins, compared with NSJV. Prevalence of BRD was not different between organic and conventional dairies. Colostrum management practices, including heat treatment and feeding colostrum from multiparous cows, varied by region and were associated with lower BRD prevalence. Calves housed in group pens, a practice observed primarily in NCA, had a higher BRD prevalence than those in individual housing. Feeding salable milk was also more common in NCA and was associated with lower BRD prevalence. Ground and road surfaces adjacent to the calf raising area were also variable by region, and paved surfaces were associated with lower BRD prevalence. Management practices associated with BRD varied across the state and may be addressed to inform the adoption and implementation of potentially protective management decisions on California dairies and other regions with similar dairy systems.

Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves

The California (CA) and Wisconsin (WI) clinical scoring systems have been proposed for bovine respiratory disease complex (BRDC) detection in preweaned dairy calves. The screening sensitivity (SSe), for estimating BRDC prevalence in a cohort of calves, diagnostic sensitivity (DSe), for confirming BRDC in ill calves, and specificity (Sp) were estimated for each of the scoring systems, as well as for nasal swab cultures for aerobic bacteria and mycoplasma species. Thoracic ultrasound and auscultation were used as the reference standard tests interpreted in parallel. A total of 536 calves (221 with BRDC and 315 healthy) were sampled from 5 premises in California. The SSe of 46.8%, DSe of 72.6%, and Sp of 87.4% was determined for the CA system. The SSe of 46.0%, DSe of 71.1%, and Sp of 91.2% was determined for the WI system. For aerobic culture, the SSe was 43.4%, DSe was 52.6%, and Sp was 71.3%; for Mycoplasma spp. culture, the SSe was 57.5%, DSe was 68.9%, and Sp was 59.7%. The screening and diagnostic sensitivities of the scoring systems were not significantly different but the Sp of the WI system was greater by 3.8%. Scoring systems can serve as rapid on-farm tools to determine the burden of BRDC in preweaned dairy calves. However, users may expect the SSe to be less than the DSe when confirming BRDC in an ill calf.

Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies

In the spring of 2013, a survey of California (CA) dairies was performed to characterize management practices related to bovine respiratory disease in preweaned calves, compare these practices across geographic regions of the state, and determine the principal components that explain the variability in management between herds. The questionnaire consisted of 53 questions divided into 6 sections to assess management practices affecting dairy calves from precalving to weaning. The questionnaire was mailed to 1,523 grade A licensed dairies in CA and 224 responses (14.7%) were collected. Survey response rates were similar over the 3 defined regions of CA: northern CA, northern San Joaquin Valley, and the greater southern CA region. The mean size of respondent herds was 1,423 milking cows. Most dairies reported raising preweaned calves on-site (59.7%). In 93.3% of dairies, preweaned calves were raised in some form of individual housing. Nonsaleable milk was the most frequent liquid diet fed to preweaned heifers (75.2%). Several important differences were identified between calf-raising practices in CA and practices reported in recent nationwide studies, including herd sizes, housing practices, and sources of milk fed to heifers. The differences between the CA and nationwide studies may be explained by differences in herd size. Regional differences within CA were also identified. Compared with the 2 other regions, northern CA dairies were found to have smaller herds, less Holstein cattle, calves remained with dams for longer periods of time after calving, were more likely to be certified organic dairies, and raised their own calves more often. Principal component analysis was performed and identified 11 components composed of 28 variables (questions) that explained 66.5% of the variability in the data. The identified components and questions will contribute to developing a risk assessment tool for bovine respiratory disease in preweaned dairy calves.

Calf health from birth to weaning. III. housing and management of calf pneumonia

Calfhood diseases have a major impact on the economic viability of cattle operations. A three part review series has been developed focusing on calf health from birth to weaning. In this paper, the last of the three part series, we review disease prevention and management with particular reference to pneumonia, focusing primarily on the pre-weaned calf. Pneumonia in recently weaned suckler calves is also considered, where the key risk factors are related to the time of weaning. Weaning of the suckler calf is often combined with additional stressors including a change in nutrition, environmental change, transport and painful husbandry procedures (castration, dehorning). The reduction of the cumulative effects of these multiple stressors around the time of weaning together with vaccination programmes (preconditioning) can reduce subsequent morbidity and mortality in the feedlot. In most studies, calves housed individually and calves housed outdoors with shelter, are associated with decreased risk of disease. Even though it poses greater management challenges, successful group housing of calves is possible. Special emphasis should be given to equal age groups and to keeping groups stable once they are formed. The management of pneumonia in calves is reliant on a sound understanding of aetiology, relevant risk factors, and of effective approaches to diagnosis and treatment. Early signs of pneumonia include increased respiratory rate and fever, followed by depression. The single most important factor determining the success of therapy in calves with pneumonia is early onset of treatment, and subsequent adequate duration of treatment. The efficacy and economical viability of vaccination against respiratory disease in calves remains unclear.

Effect of abrupt weaning at housing on leukocyte distribution, functional activity of neutrophils, and acute phase protein response of beef calves

BACKGROUND

Sixteen, spring-born, single suckled, castrated male calves of Limousin x Holstein-Friesian and Simmental x Holstein-Friesian dams respectively, were used to investigate the effect of weaning on total leukocyte and differential counts, neutrophil functional activity, lymphocyte immunophenotypes, and acute phase protein response. Calves grazed with their dams until the end of the grazing season when they were housed in a slatted floor shed. On the day of housing, calves were assigned to a treatment, (i) abruptly weaned (W: n = 8) or (ii) non-weaned (controls) (C: n = 8). Weaned calves were housed in pens without their dams, whereas non-weaned (control) calves were housed with their dams. Blood was collected on day -7, 0 (housing), 2, 7, and 14 to determine total leukocyte and differential counts and concentration of fibrinogen and haptoglobin. Lymphocyte immunophenotypes were characterised using selected surface antigens (CD4+, CD8+, WC1+ (gammadelta T cells), MHC Class II+ lymphocytes), and the functional activities of neutrophils (surface expression of L-selectin (CD62L), phagocytic and oxidative burst activity) were investigated using flow cytometry.

RESULTS

Treatment x sampling time interactions (P < 0.05) were detected for total leukocyte and neutrophil counts, all lymphocyte subsets, mean fluorescence intensity of CD62L+ neutrophils, and percentage neutrophils performing phagocytosis. On d 2, total leukocyte and neutrophil count increased (P < 0.001), and percentage CD4+ and CD8+ lymphocytes, percentage phagocytic neutrophils, mean fluorescence intensity of CD62L+ neutrophils decreased (P < 0.05) in W compared with baseline (d 0), whereas they were unchanged (P > 0.05) in C. On d 2, percentage WC1+ lymphocytes decreased (P < 0.05), whereas percentage MHC class II+ lymphocytes increased (P < 0.05) in W and C, however the magnitude of change was greater in W than C. There were no treatment x sampling time interactions (P > 0.05) for monocyte, eosinophil, and basophil counts, percentage G1+ neutrophils, or percentage oxidative burst positive neutrophils.

CONCLUSIONS

Abrupt weaning resulted in increased neutrophil counts and impaired trafficking and phagocytic function. Together with the changes in lymphocyte subsets, the results suggest that there was a greater transitory reduction in immune function at housing in abruptly weaned than non-weaned beef calves.