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Bartold K, Pietrzyk-Le A, Golebiewska K, Lisowski W, Cauteruccio S, Licandro E, D'Souza F, Kutner W. Oligonucleotide Determination via Peptide Nucleic Acid Macromolecular Imprinting in an Electropolymerized CG-Rich Artificial Oligomer Analogue. ACS APPLIED MATERIALS & INTERFACES 2018; 10:27562-27569. [PMID: 30071156 DOI: 10.1021/acsami.8b09296] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We devised and fabricated a chemosensor for determination of the genetically relevant 5'-GCGGCGGC-3' (G = guanine; C = cytosine) oligonucleotide. For that, we simultaneously electrosynthesized and electrode-immobilized a sequence-defined octakis(2,2'-bithien-5-yl) DNA hybridizing probe using both a "macromolecular imprinting in polymer strategy" and a sequence-programmable peptide nucleic acid (PNA) template. With electrochemical impedance spectroscopy (EIS) and surface plasmon resonance (SPR) transductions under stagnant-solution and flow injection analysis (FIA) conditions, respectively, we determined the above oligonucleotide with 200-pM EIS limit of detection. With its EIS-determined apparent imprinting factor of ∼4.0, the chemosensor was discriminative to both mismatched oligonucleotides and Dulbecco's modified Eagle's medium sample interferences.
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Affiliation(s)
- Katarzyna Bartold
- Institute of Physical Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Agnieszka Pietrzyk-Le
- Institute of Physical Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Karolina Golebiewska
- Institute of Physical Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Wojciech Lisowski
- Institute of Physical Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Silvia Cauteruccio
- Department of Chemistry , University of Milan , Via Golgi 19 , I-20133 Milan , Italy
| | - Emanuela Licandro
- Department of Chemistry , University of Milan , Via Golgi 19 , I-20133 Milan , Italy
| | - Francis D'Souza
- Department of Chemistry , University of North Texas , 1155 Union Circle , No. 305070, Denton , Texas 76203-5017 , United States
| | - Wlodzimierz Kutner
- Institute of Physical Chemistry , Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
- Faculty of Mathematics and Natural Sciences, School of Sciences , Cardinal Stefan Wyszynski University in Warsaw , Wóycickiego 1/3 , 01-938 Warsaw , Poland
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Analysis of the evolution of the detection limits of electrochemical nucleic acid biosensors II. Anal Bioanal Chem 2017; 409:4335-4352. [DOI: 10.1007/s00216-017-0377-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Revised: 04/11/2017] [Accepted: 04/21/2017] [Indexed: 01/07/2023]
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Lach P, Sharma PS, Golebiewska K, Cieplak M, D'Souza F, Kutner W. Molecularly Imprinted Polymer Chemosensor for Selective Determination of an N-Nitroso-l-proline Food Toxin. Chemistry 2017; 23:1942-1949. [PMID: 28060413 DOI: 10.1002/chem.201604799] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Indexed: 11/08/2022]
Abstract
A molecularly imprinted polymer (MIP)-based chemosensor for the selective determination of a chosen toxin, N-nitroso-l-proline (Pro-NO), was devised and fabricated. By means of DFT, the structure of the pre-polymerization (functional monomer)-template complex was modeled. This complex was then potentiodynamically electropolymerized in the presence of cross-linking monomer to form a MIP-Pro-NO thin film. Next, the Pro-NO template was extracted from MIP-Pro-NO with 0.1 m NaOH. Piezoelectric microgravimetry (PM) on an electrochemical quartz crystal microbalance and electrochemical (differential pulse voltammetry (DPV) and electrochemical impedance spectroscopy (EIS)) techniques were used to transduce binding of Pro-NO to molecular cavities of the MIP-Pro-NO. With DPV and EIS chemosensing, the limits of detection (LODs) were about 80.9 and 36.9 nM Pro-NO, respectively; and the selectivity coefficients for urea, glucose, creatinine, and adrenalin interferences were 6.6, 13.2, 2.1, and 2.0, respectively, with DPV as well as 2.3, 2.0, 3.3, and 2.5, respectively, with EIS. With PM under flow injection analysis conditions, the LOD was 10 μm Pro-NO. The MIP-Pro-NO chemosensor detectability and selectivity with respect to interferences were sufficiently high to determine Pro-NO in protein-providing food products.
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Affiliation(s)
- Patrycja Lach
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Piyush Sindhu Sharma
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Karolina Golebiewska
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Maciej Cieplak
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland
| | - Francis D'Souza
- Department of Chemistry, University of North Texas, 1155 Union Circle, #305070, Denton, TX, 76203-5017, USA
| | - Wlodzimierz Kutner
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224, Warsaw, Poland.,Faculty of Mathematics and Natural Sciences, School of Sciences, Cardinal Stefan Wyszynski University in Warsaw, Woycickiego 1/3, 01-815, Warsaw, Poland
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Voccia D, Sosnowska M, Bettazzi F, Roscigno G, Fratini E, De Franciscis V, Condorelli G, Chitta R, D’Souza F, Kutner W, Palchetti I. Direct determination of small RNAs using a biotinylated polythiophene impedimetric genosensor. Biosens Bioelectron 2017; 87:1012-1019. [DOI: 10.1016/j.bios.2016.09.058] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 09/02/2016] [Accepted: 09/16/2016] [Indexed: 12/14/2022]
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Kurzątkowska K, Sirko A, Zagórski-Ostoja W, Dehaen W, Radecka H, Radecki J. Electrochemical Label-free and Reagentless Genosensor Based on an Ion Barrier Switch-off System for DNA Sequence-Specific Detection of the Avian Influenza Virus. Anal Chem 2015; 87:9702-9. [DOI: 10.1021/acs.analchem.5b01988] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Katarzyna Kurzątkowska
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
| | - Agnieszka Sirko
- Institute
of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego
5A, 02-106 Warsaw, Poland
| | | | - Wim Dehaen
- Department
of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
| | - Hanna Radecka
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
| | - Jerzy Radecki
- Institute
of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland
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Huynh TP, Sharma PS, Sosnowska M, D'Souza F, Kutner W. Functionalized polythiophenes: Recognition materials for chemosensors and biosensors of superior sensitivity, selectivity, and detectability. Prog Polym Sci 2015. [DOI: 10.1016/j.progpolymsci.2015.04.009] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Lee S, Jo H, Her J, Lee HY, Ban C. Ultrasensitive electrochemical detection of engrailed-2 based on homeodomain-specific DNA probe recognition for the diagnosis of prostate cancer. Biosens Bioelectron 2015; 66:32-8. [DOI: 10.1016/j.bios.2014.11.003] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Revised: 11/01/2014] [Accepted: 11/03/2014] [Indexed: 12/13/2022]
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Nicotine molecularly imprinted polymer: Synergy of coordination and hydrogen bonding. Biosens Bioelectron 2015; 64:657-63. [DOI: 10.1016/j.bios.2014.09.014] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2014] [Revised: 08/29/2014] [Accepted: 09/04/2014] [Indexed: 01/17/2023]
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Label-Free Impedimetric Determination of miRNA Using Biotinylated Conducting Polymer Modified Carbon Electrodes. LECTURE NOTES IN ELECTRICAL ENGINEERING 2015. [DOI: 10.1007/978-3-319-09617-9_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Styrene Sulphonic Acid Doped Polyaniline Based Immunosensor for Highly Sensitive Impedimetric Sensing of Atrazine. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2014.09.048] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Fu Y, Callaway Z, Lum J, Wang R, Lin J, Li Y. Exploiting Enzyme Catalysis in Ultra-Low Ion Strength Media for Impedance Biosensing of Avian Influenza Virus Using a Bare Interdigitated Electrode. Anal Chem 2014; 86:1965-71. [DOI: 10.1021/ac402550f] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Yingchun Fu
- Department
of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
- Key
Laboratory of Chemical Biology and Traditional Chinese Medicine Research
(Ministry of Education of China), Hunan Normal University, Changsha 410081, P. R. China
| | - Zachary Callaway
- Department
of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Jacob Lum
- Department
of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
- Cell
and Molecular Biology Program, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Ronghui Wang
- Department
of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Jianhan Lin
- Modern
Precision
Agriculture System Integration Research Key Lab of Ministry of Education
of China, China Agricultural University, Beijing 100083, China
| | - Yanbin Li
- Department
of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, Arkansas 72701, United States
- Center
of Excellence for Poultry Science, University of Arkansas, Fayetteville, Arkansas 72701, United States
- College
of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
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Hu P, Han L, Dong S. A facile one-pot method to synthesize a polypyrrole/hemin nanocomposite and its application in biosensor, dye removal, and photothermal therapy. ACS APPLIED MATERIALS & INTERFACES 2014; 6:500-506. [PMID: 24308420 DOI: 10.1021/am404539j] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
In this work, we introduced a facile method for the construction of a polypyrrole/hemin (PPy/hemin) nanocomposite via one-pot chemical oxidative polymerization. In this process, a hemin molecule serving as a dopant was entrapped in the PPy nanocomposite during chemical oxidative polymerization. Scanning electron microscopy (SEM), transmission electron microscopy (TEM), Fourier transform infrared spectroscopy (FTIR), and UV-visible spectroscopy results demonstrated that the PPy/hemin nanocomposite was successfully synthesized. The as-prepared nanocomposite exhibited intrinsic peroxidase-like catalytic activities, strong adsorption properties, and an excellent near-infrared (NIR) light-induced thermal effect. We utilized the nanomaterials to catalyze the oxidation of a peroxidase substrate 3,3,5,5-tetramethylbenzidine by H2O2 to the oxidized colored product which provided a colorimetric detection of glucose. As low as 50 μM glucose could be detected with a linear range from 0.05 to 8 mM. Moreover, the obtained nanocomposite also showed excellent removal efficiency for methyl orange and rhodamine B and a photothermal effect, which implied a promising application as the pollutant adsorbent and photothermal agent. The unique nature of the PPy/hemin nanocomposite makes it very promising for the fabrication of inexpensive, high-performance bioelectronic devices in the future.
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Affiliation(s)
- Peng Hu
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Science , Changchun, Jilin, 130022, China
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