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Zheng Y, Yan J, Cao C, Liu Y, Yu D, Liang X. Application of chromatography in purification and structural analysis of natural polysaccharides: A review. J Sep Sci 2023; 46:e2300368. [PMID: 37480171 DOI: 10.1002/jssc.202300368] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/11/2023] [Accepted: 07/14/2023] [Indexed: 07/23/2023]
Abstract
Polysaccharides are widely distributed in natural sources from monocytic microorganisms to higher animals, and are found in a variety of biological activities in recent decades. Natural polysaccharides have the characteristics of large molecular weight, diverse composition, and complex structure, so their purification and structural analysis are difficult issues in research. Chromatography as a powerful separation technique, plays an irreplaceable role in the separation and structural analysis of natural polysaccharides, especially in the purification of polysaccharides, the separation of hydrolysates, and the analysis of monosaccharide composition. The separation mechanisms and application of different chromatographic methods in the studies of polysaccharides were summarized in this review. Moreover, the advantages and drawbacks of various chromatography methods were discussed as well.
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Affiliation(s)
- Yi Zheng
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
| | - Jingyu Yan
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
| | - Cuiyan Cao
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
| | - Yanfang Liu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
| | - Dongping Yu
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
| | - Xinmiao Liang
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Ganjiang Chinese Medicine Innovation Center, Nanchang, China
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Dow JM, Mauri M, Scott TA, Wren BW. Improving protein glycan coupling technology (PGCT) for glycoconjugate vaccine production. Expert Rev Vaccines 2020; 19:507-527. [DOI: 10.1080/14760584.2020.1775077] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Jennifer Mhairi Dow
- Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
| | - Marta Mauri
- Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
| | | | - Brendan William Wren
- Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
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Zamora CY, Schocker NS, Chang MM, Imperiali B. Chemoenzymatic Synthesis and Applications of Prokaryote-Specific UDP-Sugars. Methods Enzymol 2017; 597:145-186. [PMID: 28935101 DOI: 10.1016/bs.mie.2017.06.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
This method describes the chemoenzymatic synthesis of several nucleotide sugars, which are essential substrates in the biosynthesis of prokaryotic N- and O-linked glycoproteins. Protein glycosylation is now known to be widespread in prokaryotes and proceeds via sequential action of several enzymes, utilizing both common and modified prokaryote-specific sugar nucleotides. The latter, which include UDP-hexoses such as UDP-diNAc-bacillosamine (UDP-diNAcBac), UDP-diNAcAlt, and UDP-2,3-diNAcManA, are also important components of other bacterial and archaeal glycoconjugates. The ready availability of these "high-value" intermediates will enable courses of study into inhibitor screening, glycoconjugate biosynthesis pathway discovery, and unnatural carbohydrate incorporation toward metabolic engineering.
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Affiliation(s)
| | | | - Michelle M Chang
- Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Barbara Imperiali
- Massachusetts Institute of Technology, Cambridge, MA, United States.
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4
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Stine KJ. Application of Porous Materials to Carbohydrate Chemistry and Glycoscience. Adv Carbohydr Chem Biochem 2017; 74:61-136. [PMID: 29173727 DOI: 10.1016/bs.accb.2017.10.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
There is a growing interest in using a range of porous materials to meet research needs in carbohydrate chemistry and glycoscience in general. Among the applications of porous materials reviewed in this chapter, enrichment of glycans from biological samples prior to separation and analysis by mass spectrometry is a major emphasis. Porous materials offer high surface area, adjustable pore sizes, and tunable surface chemistry for interacting with glycans, by boronate affinity, hydrophilic interactions, molecular imprinting, and polar interactions. Among the materials covered in this review are mesoporous silica and related materials, porous graphitic carbon, mesoporous carbon, porous polymers, and nanoporous gold. In some applications, glycans are enzymatically or chemically released from glycoproteins or glycopeptides, and the porous materials have the advantage of size selectivity admitting only the glycans into the pores and excluding proteins. Immobilization of lectins onto porous materials of suitable pore size allows for the use of lectin-carbohydrate interactions in capture or separation of glycoproteins. Porous material surfaces modified with carbohydrates can be used for the selective capture of lectins. Controlled release of therapeutics from porous materials mediated by glycans has been reported, and so has therapeutic targeting using carbohydrate-modified porous particles. Additional applications of porous materials in glycoscience include their use in the supported synthesis of oligosaccharides and in the development of biosensors for glycans.
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Marriott AS, António C, Thomas-Oates J. Application of Carbonaceous Materials in Separation Science. POROUS CARBON MATERIALS FROM SUSTAINABLE PRECURSORS 2015. [DOI: 10.1039/9781782622277-00103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Porous carbons in the separation sciences occupy an important niche owing to their unique retention characteristics, chemical stability and the ability to control pore structure through template strategies. However, these same synthetic processes utilise oil-based carbonising resins and high temperature, energy-intensive pyrolysis steps to ensure the carbon product has pore-size regularity, minimal micropore content and homogeneous surface chemistry. This chapter will primarily focus on the development of porous carbons for application as chromatographic stationary phases. Discussion will cover the unique characteristics of the porous carbon retention mechanism and its application in separating a broad range of analyte classes. The chapter then moves on to describe the current disadvantages in the manufacture of commercially available carbon phase and then highlight recent efforts aimed at the development of alternative porous carbon stationary phases derived from sustainable carbon precursors.
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Affiliation(s)
| | - Carla António
- Plant Metabolomics Laboratory, Instituto de Tecnologia Química e Biológica António Xavier-Universidade Nova de Lisboa (ITQB-UNL) Av. República 2780-157 Oeiras Portugal
| | - Jane Thomas-Oates
- Department of Chemistry, University of York York YO10 5DD UK
- Centre of Excellence in Mass Spectrometry, University of York York YO10 5DD UK
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Wahab MF, Ibrahim MEA, Lucy CA. Carboxylate modified porous graphitic carbon: a new class of hydrophilic interaction liquid chromatography phases. Anal Chem 2013; 85:5684-91. [PMID: 23701017 DOI: 10.1021/ac400350x] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Stationary phases for hydrophilic interaction liquid chromatography (HILIC) are predominantly based on silica and polymer supports. We present porous graphitic carbon particles with covalently attached carboxylic acid groups (carboxylate-PGC) as a new HILIC stationary phase. PGC particles were modified by adsorbing the diazonium salt of 4-aminobenzoic acid onto the PGC, followed by reduction of the adsorbed salt with sodium borohydride. The newly developed carboxylate-PGC phase exhibits different selectivity than that of 35 HPLC columns, including bare silica, zwitterionic, amine, reversed, and unmodified PGC phases. Carboxylate-PGC is stable from pH 2.0 to 12.6, yielding reproducible retention even at pH 12.6. Characterization of the new phase is presented by X-ray photoelectron spectroscopy, thermogravimetry, zeta potentials, and elemental analysis. The chromatographic performance of carboxylate-PGC as a HILIC phase is illustrated by separations of carboxylic acids, nucleotides, phenols, and amino acids.
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Affiliation(s)
- M Farooq Wahab
- Department of Chemistry, University of Alberta, Gunning/Lemieux Chemistry Centre, Edmonton, Alberta T6G 2G2, Canada
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Baker JL, Çelik E, DeLisa MP. Expanding the glycoengineering toolbox: the rise of bacterial N-linked protein glycosylation. Trends Biotechnol 2013; 31:313-23. [PMID: 23582719 DOI: 10.1016/j.tibtech.2013.03.003] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Revised: 03/08/2013] [Accepted: 03/09/2013] [Indexed: 01/05/2023]
Abstract
Glycosylation is the most prevalent post-translational modification found on proteins, occurring in all domains of life. Ever since the discovery of asparagine-linked (N-linked) protein glycosylation pathways in bacteria, major efforts have been made to harness these systems for the creation of novel therapeutics, vaccines, and diagnostics. Recent advances such as the ability to produce designer glycans in bacteria, some containing unnatural sugars, and techniques for evolving glycosylation enzymes have spawned an entirely new discipline known as bacterial glycoengineering. In addition to their biotechnological and therapeutic potential, bacteria equipped with recombinant N-linked glycosylation pathways are improving our understanding of the N-glycosylation process. This review discusses the key role played by microorganisms in glycosciences, particularly in the context of N-linked glycosylation.
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Affiliation(s)
- Jenny L Baker
- School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
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Gebhart C, Ielmini MV, Reiz B, Price NL, Aas FE, Koomey M, Feldman MF. Characterization of exogenous bacterial oligosaccharyltransferases in Escherichia coli reveals the potential for O-linked protein glycosylation in Vibrio cholerae and Burkholderia thailandensis. Glycobiology 2012; 22:962-74. [DOI: 10.1093/glycob/cws059] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
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Guan Z, Meyer BH, Albers SV, Eichler J. The thermoacidophilic archaeon Sulfolobus acidocaldarius contains an unusually short, highly reduced dolichyl phosphate. Biochim Biophys Acta Mol Cell Biol Lipids 2011; 1811:607-16. [PMID: 21745590 DOI: 10.1016/j.bbalip.2011.06.022] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Revised: 06/16/2011] [Accepted: 06/17/2011] [Indexed: 11/19/2022]
Abstract
Polyprenoids, polymers containing varied numbers of isoprene subunits, serve numerous roles in biology. In Eukarya, dolichyl phosphate, a phosphorylated polyprenol bearing a saturated α-end isoprene subunit, serves as the glycan carrier during N-glycosylation, namely that post-translational modification whereby glycans are covalently linked to select asparagine residues of a target protein. As in Eukarya, N-glycosylation in Archaea also relies on phosphorylated dolichol. In this report, LC-ESI/MS/MS was employed to identify a novel dolichyl phosphate (DolP) in the thermoacidophilic archaeon, Sulfolobus acidocaldarius. The unusually short S. acidocaldarius DolP presents a degree of saturation not previously reported. S. acidocaldarius DolP contains not only the saturated α- and ω-end isoprene subunits observed in other archaeal DolPs, but also up to five saturated intra-chain isoprene subunits. The corresponding dolichol and hexose-charged DolP species were also detected. The results of the present study offer valuable information on the biogenesis and potential properties of this unique DolP. Furthermore, elucidation of the mechanism of α-isoprene unit reduction in S. acidocaldarius dolichol may facilitate the identification of the alternative, as yet unknown polyprenol reductase in Eukarya.
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Affiliation(s)
- Ziqiang Guan
- Department of Biochemistry, Duke University Medical Center, Durham, NC 27710, USA
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Guan Z, Eichler J. Liquid chromatography/tandem mass spectrometry of dolichols and polyprenols, lipid sugar carriers across evolution. Biochim Biophys Acta Mol Cell Biol Lipids 2011; 1811:800-6. [PMID: 21570481 DOI: 10.1016/j.bbalip.2011.04.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2010] [Revised: 04/12/2011] [Accepted: 04/24/2011] [Indexed: 10/18/2022]
Abstract
Across evolution, dolichols and polyprenols serve as sugar carriers in biosynthetic processes that include protein glycosylation and lipopolysaccharide biogenesis. Liquid chromatography coupled with electrospray ionization mass spectrometry offers a powerful tool for studying dolichols and polyprenols in their alcohol or glycan-modified forms in members of all three domains of life. In the following, recent examples of the how different versions of this analytical approach, namely reverse phase liquid chromatography-multiple reaction monitoring, normal phase liquid chromatography/tandem mass spectrometry and normal phase liquid chromatography-precursor ion scan detection have respectively served to address novel aspects of dolichol or polyprenol biology in Eukarya, Archaea and Bacteria.
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Affiliation(s)
- Ziqiang Guan
- Department of Biochemistry, Duke University Medical Center, Durham, NC 27710, USA.
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Melmer M, Stangler T, Premstaller A, Lindner W. Solvent effects on the retention of oligosaccharides in porous graphitic carbon liquid chromatography. J Chromatogr A 2010; 1217:6092-6. [PMID: 20800844 DOI: 10.1016/j.chroma.2010.07.059] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 07/21/2010] [Accepted: 07/23/2010] [Indexed: 11/25/2022]
Abstract
Porous graphitic carbon (PGC) is known as well suited adsorbent for liquid chromatography of carbohydrates. In this work we report on systematic investigations of solvent effects on the retention mechanism of fluorescence labeled malto-oligosaccharides on PGC. The adsorption mechanism was found to depend on the type of organic modifier used in the mobile phase. Positive adsorption enthalpies and entropies, which have already been reported in the literature, were solely produced using acetonitrile. Both alternative solvents (tetrahydrofuran, 2-propanol) yielded in contrast negative enthalpies. As plausible retention mechanism for oligosaccharides on PGC applying acetonitrile as mobile phase component we propose the formation of a dense and highly ordered solvation layer of the PGC surface with the linear acetonitrile molecules. Adsorption of analyte molecules requires a displacement of numerous acetonitrile molecules, which explains the positive enthalpy and entropy values measured. The interplay of enthalpic and entropic contributions to the overall adsorption phenomena results in strongly temperature dependent chromatographic selectivity values.
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Xu X, Ding L, Xue Y, Ju H. A simple fluorescent strategy for in situ evaluation of cell surface carbohydrate with a quantum dot–lectin nanoprobe. Analyst 2010; 135:1906-8. [DOI: 10.1039/c0an00250j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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