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Pastor E, Lian Z, Xia L, Ecija D, Galán-Mascarós JR, Barja S, Giménez S, Arbiol J, López N, García de Arquer FP. Complementary probes for the electrochemical interface. Nat Rev Chem 2024; 8:159-178. [PMID: 38388837 DOI: 10.1038/s41570-024-00575-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/09/2024] [Indexed: 02/24/2024]
Abstract
The functions of electrochemical energy conversion and storage devices rely on the dynamic junction between a solid and a fluid: the electrochemical interface (EI). Many experimental techniques have been developed to probe the EI, but they provide only a partial picture. Building a full mechanistic understanding requires combining multiple probes, either successively or simultaneously. However, such combinations lead to important technical and theoretical challenges. In this Review, we focus on complementary optoelectronic probes and modelling to address the EI across different timescales and spatial scales - including mapping surface reconstruction, reactants and reaction modulators during operation. We discuss how combining these probes can facilitate a predictive design of the EI when closely integrated with theory.
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Affiliation(s)
- Ernest Pastor
- CNRS, IPR (Institut de Physique de Rennes), University of Rennes, Rennes, France.
- CNRS, Univ Rennes, DYNACOM (Dynamical Control of Materials Laboratory) - IRL2015, The University of Tokyo, Tokyo, Japan.
| | - Zan Lian
- ICIQ-Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
| | - Lu Xia
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, Barcelona, Spain
| | - David Ecija
- IMDEA Nanoscience, Campus Universitario de Cantoblanco, Madrid, Spain
| | - José Ramón Galán-Mascarós
- ICIQ-Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
- ICREA, Barcelona, Spain
| | - Sara Barja
- Department of Polymers and Advanced Materials, Centro de Física de Materiales (CFM), University of the Basque Country UPV/EHU, San Sebastián, Spain
- Donostia International Physics Center (DIPC), San Sebastián, Spain
- IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
| | - Sixto Giménez
- Institute of Advanced Materials (INAM) Universitat Jaume I, Castelló, Spain
| | - Jordi Arbiol
- ICREA, Barcelona, Spain
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, Barcelona, Catalonia, Spain
| | - Núria López
- ICIQ-Institute of Chemical Research of Catalonia, The Barcelona Institute of Science and Technology, Tarragona, Spain
| | - F Pelayo García de Arquer
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, Barcelona, Spain.
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2
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Krawczyk-Wołoszyn K, Roczkowski D, Reich A. Evaluation of Surface Structure and Morphological Phenomena of Caucasian Virgin Hair with Atomic Force Microscopy. MEDICINA (KAUNAS, LITHUANIA) 2024; 60:297. [PMID: 38399584 PMCID: PMC10890343 DOI: 10.3390/medicina60020297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 02/03/2024] [Accepted: 02/07/2024] [Indexed: 02/25/2024]
Abstract
Background and Objectives: Atomic force microscopy (AFM) as a type of scanning microscopy (SPM), which has a resolution of fractions of a nanometer on the atomic scale, is widely used in materials science. To date, research using AFM in medicine has focused on neurodegenerative diseases, osteoporosis, cancer tumors, cell receptors, proteins and the DNA mismatch repair (MMR) system. Only a few small studies of hair imaging have been conducted, mostly in biotechnology or cosmetology. Thanks to the possibilities offered by AFM imaging, dermatologists can non-invasively assess the condition of hair and its possible disorders. Our goal was to capture images and microscopically analyze morphological changes in the surface of healthy hair. Materials and Methods: In this study, three to five hairs were collected from each person. Each hair was examined at nine locations (0.5; 1.0; 1.5; 2.0; 3.5; 4.5; 5.5; 6.5 and 7.0 cm from the root). At least 4 images (4-10 images) were taken at each of the 9 locations. A total of 496 photos were taken and analyzed. Metric measurements of hair scales, such as apparent length, width and scale step height, were taken. Results: This publication presents the changes occurring in hair during the natural delamination process. In addition, morphoological changes visualized on the surface of healthy hair (pitting, oval indentations, rod-shaped macro-fibrillar elements, globules, scratches, wavy edge) are presented. A quantitative analysis of the structures found was carried out. Conclusions: The findings of this study can be used in further research and work related to the subject of human hair. They can serve as a reference for research on scalp and hair diseases, as well as hair care.
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Affiliation(s)
- Karolina Krawczyk-Wołoszyn
- Doctoral School, University of Rzeszow, 35-959 Rzeszów, Poland;
- Department of Dermatology, Institute of Medical Sciences, Medical College of the Rzeszow University, 35-959 Rzeszów, Poland;
| | - Damian Roczkowski
- Department of Dermatology, Institute of Medical Sciences, Medical College of the Rzeszow University, 35-959 Rzeszów, Poland;
| | - Adam Reich
- Department of Dermatology, Institute of Medical Sciences, Medical College of the Rzeszow University, 35-959 Rzeszów, Poland;
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3
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Ederer M, Löffler S. Optimizing experimental parameters for orbital mapping. Ultramicroscopy 2023; 256:113866. [PMID: 37866278 DOI: 10.1016/j.ultramic.2023.113866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 09/29/2023] [Accepted: 10/08/2023] [Indexed: 10/24/2023]
Abstract
A new material characterization technique is emerging for the transmission electron microscope (TEM). Using electron energy-loss spectroscopy, real space mappings of the underlying electronic transitions in the sample, so called orbital maps, can be produced. Thus, unprecedented insight into the electronic orbitals responsible for most of the electrical, magnetic and optical properties of bulk materials can be gained. However, the incredibly demanding requirements on spatial as well as spectral resolution paired with the low signal-to-noise ratio severely limits the day-to-day use of this new technique. With the use of simulations, we strive to alleviate these challenges as much as possible by identifying optimal experimental parameters. In this manner, we investigate representative examples of a transition metal oxide, a material consisting entirely of light elements, and an interface between two different materials to find and compare acceptable ranges for sample thickness, acceleration voltage and electron dose for a scanning probe as well as for parallel illumination.
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Affiliation(s)
- Manuel Ederer
- University Service Centre for Transmission Electron Microscopy, TU Wien, Wiedner Hauptstraße 8-10/E057-02, 1040 Wien, Austria.
| | - Stefan Löffler
- University Service Centre for Transmission Electron Microscopy, TU Wien, Wiedner Hauptstraße 8-10/E057-02, 1040 Wien, Austria
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4
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Guner B, Laflamme S, Dagdeviren OE. Customization of an atomic force microscope for multidimensional measurements under environmental conditions. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2023; 94:063704. [PMID: 37862538 DOI: 10.1063/5.0147331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 06/09/2023] [Indexed: 10/22/2023]
Abstract
Atomic force microscopy (AFM) is an analytical surface characterization tool that reveals the surface topography at a nanometer length scale while probing local chemical, mechanical, and even electronic sample properties. Both contact (performed with a constant deflection of the cantilever probe) and dynamic operation modes (enabled by demodulation of the oscillation signal under tip-sample interaction) can be employed to conduct AFM-based measurements. Although surface topography is accessible regardless of the operation mode, the resolution and the availability of the quantified surface properties depend on the mode of operation. However, advanced imaging techniques, such as frequency modulation, to achieve high resolution, quantitative surface properties are not implemented in many commercial systems. Here, we show the step-by-step customization of an atomic force microscope. The original system was capable of surface topography and basic force spectroscopy measurements while employing environmental control, such as temperature variation of the sample/tip, etc. We upgraded this original setup with additional hardware (e.g., a lock-in amplifier with phase-locked loop capacity, a high-voltage amplifier, and a new controller) and software integration while utilizing its environmental control features. We show the capabilities of the customized system with frequency modulation-based topography experiments and automated voltage and/or distance spectroscopy, time-resolved AFM, and two-dimensional force spectroscopy measurements under ambient conditions. We also illustrate the enhanced stability of the setup with active topography and frequency drift corrections. We believe that our methodology can be useful for the customization and automation of other scanning probe systems.
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Affiliation(s)
- Bugrahan Guner
- Department of Mechanical Engineering, École de Technologie Supérieure, University of Quebec, Montreal, Quebec H3C 1K3, Canada
| | - Simon Laflamme
- Department of Mechanical Engineering, École de Technologie Supérieure, University of Quebec, Montreal, Quebec H3C 1K3, Canada
| | - Omur E Dagdeviren
- Department of Mechanical Engineering, École de Technologie Supérieure, University of Quebec, Montreal, Quebec H3C 1K3, Canada
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5
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Xu J, Zhu X, Tan S, Zhang Y, Li B, Tian Y, Shan H, Cui X, Zhao A, Dong Z, Yang J, Luo Y, Wang B, Hou JG. Determining structural and chemical heterogeneities of surface species at the single-bond limit. Science 2021; 371:818-822. [DOI: 10.1126/science.abd1827] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Revised: 12/07/2020] [Accepted: 01/14/2021] [Indexed: 12/16/2022]
Affiliation(s)
- Jiayu Xu
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xiang Zhu
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Shijing Tan
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yao Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Bin Li
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yunzhe Tian
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Huan Shan
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xuefeng Cui
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Aidi Zhao
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Zhenchao Dong
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Jinlong Yang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yi Luo
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Bing Wang
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - J. G. Hou
- Hefei National Laboratory for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
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6
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Sun Y, Zeng K. Characterization of Catalysts by Advanced Scanning Probe Microscopy and Spectroscopy. ChemCatChem 2020. [DOI: 10.1002/cctc.201901877] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Yao Sun
- Department of Mechanical EngineeringNational University of Singapore 9 Engineering Drive 1 117576 Singapore Singapore
| | - Kaiyang Zeng
- Department of Mechanical EngineeringNational University of Singapore 9 Engineering Drive 1 117576 Singapore Singapore
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7
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Gao W, Addiego C, Wang H, Yan X, Hou Y, Ji D, Heikes C, Zhang Y, Li L, Huyan H, Blum T, Aoki T, Nie Y, Schlom DG, Wu R, Pan X. Real-space charge-density imaging with sub-ångström resolution by four-dimensional electron microscopy. Nature 2019; 575:480-484. [DOI: 10.1038/s41586-019-1649-6] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Accepted: 08/06/2019] [Indexed: 11/09/2022]
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8
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Palmino F, Loppacher C, Chérioux F. Photochemistry Highlights on On-Surface Synthesis. Chemphyschem 2019; 20:2271-2280. [PMID: 31225692 DOI: 10.1002/cphc.201900312] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Indexed: 11/12/2022]
Abstract
On-surface chemistry is a promising way to achieve the bottom-up construction of covalently-bonded molecular precursors into extended atomically-precise polymers adsorbed on surfaces. These polymers exhibit unprecedented physical or chemical properties which are of great interest for various potential applications. These nanostructures were mainly obtained in ultra-high vacuum (UHV) on noble metal single-crystal surfaces by thermal annealing as stimulus to provoke the polymerization with a catalytic role of the surface adatoms. Nevertheless, photons are also a powerful source of energy to induce the formation of covalent architectures, even if it is less-used on surfaces than in solution. In this minireview, we discuss the photo-induced on-surface polymerization from the basic mechanisms of photochemistry to the formation of extended polymers on different kinds of surfaces, which are characterized by scanning probe microscopies.
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Affiliation(s)
- F Palmino
- Institut FEMTO-ST, Univ. Bourgogne Franche-Comté, CNRS, 15B avenue des Montboucons, F-25030, Besancon, France
| | - C Loppacher
- Aix-Marseille Université, CNRS, IM2NP, F-13397, Marseille, France
| | - F Chérioux
- Institut FEMTO-ST, Univ. Bourgogne Franche-Comté, CNRS, 15B avenue des Montboucons, F-25030, Besancon, France
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9
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Voylov DN, Bocharova V, Lavrik NV, Vlassiouk I, Polizos G, Volodin A, Shulga YM, Kisliuk A, Thiyagarajan T, Miller DD, Narayanan R, Sumpter BG, Sokolov AP. Noncontact tip-enhanced Raman spectroscopy for nanomaterials and biomedical applications. NANOSCALE ADVANCES 2019; 1:3392-3399. [PMID: 36133556 PMCID: PMC9419720 DOI: 10.1039/c9na00322c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Accepted: 08/16/2019] [Indexed: 05/28/2023]
Abstract
Tip-enhanced Raman spectroscopy (TERS) has been established as one the most efficient analytical techniques for probing vibrational states with nanoscale resolution. While TERS may be a source of unique information about chemical structure and interactions, it has a limited use for materials with rough or sticky surfaces. Development of the TERS approach utilizing a non-contact scanning probe microscopy mode can significantly extend the number of applications. Here we demonstrate a proof of the concept and feasibility of a non-contact TERS approach and test it on various materials. Our experiments show that non-contact TERS can provide 10 nm spatial resolution and a Raman signal enhancement factor of 105, making it very promising for chemical imaging of materials with high aspect ratio surface patterns and biomaterials.
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Affiliation(s)
- Dmitry N Voylov
- Department of Mechanical Engineering, Tufts University Medford Massachusetts 02155 USA
- Chemical Sciences Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Vera Bocharova
- Chemical Sciences Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Nickolay V Lavrik
- Center for Nanophase Materials Sciences, Computational Sciences and Engineering Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Ivan Vlassiouk
- Energy & Transportation Science Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Georgios Polizos
- Energy & Transportation Science Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Alexei Volodin
- Institute of Problems of Chemical Physics RAS Chernogolovka Moscow region 142432 Russia
| | - Yury M Shulga
- National University of Science and Technology MISIS Moscow 119049 Russia
| | - Alexander Kisliuk
- Chemical Sciences Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Thirumagal Thiyagarajan
- Department of Medicine, University of Tennessee Health Science Center Memphis Tennessee 38103 USA
| | - Duane D Miller
- Department of Pharmaceutical Sciences, University of Tennessee Health Science Center Memphis Tennessee 38103 USA
| | - Ramesh Narayanan
- Department of Medicine, University of Tennessee Health Science Center Memphis Tennessee 38103 USA
| | - Bobby G Sumpter
- Center for Nanophase Materials Sciences, Computational Sciences and Engineering Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
| | - Alexei P Sokolov
- Chemical Sciences Division, Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA
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10
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Gerkman MA, Sinha S, Warner JH, Han GGD. Direct Imaging of Photoswitching Molecular Conformations Using Individual Metal Atom Markers. ACS NANO 2019; 13:87-96. [PMID: 30521310 DOI: 10.1021/acsnano.8b08441] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Photoswitching behavior of individual organic molecules was imaged by annular dark-field scanning transmission electron microscopy (ADF-STEM) using a highly electron beam transparent graphene support. Photoswitching azobenzene derivatives with ligands at each end containing single transition-metal atoms (Pt) were designed (Pt-complex), and the distance between the strong ADF-STEM contrast from the two Pt atoms in each Pt-complex is used to track molecular length changes. UV irradiation was used to induce photoswitching of the Pt complex on graphene, and we show that the measured Pt-Pt distances within isolated molecules decrease from ∼2.1 nm to ∼1.4 nm, indicative of a trans-to- cis isomerization. Light illumination of the Pt-complex on the graphene support also caused their diffusion out from initial clusters to the surrounding area of graphene, indicating that the light-activated mobilization overcomes the intermolecular van der Waals interactions. This approach shows how individual isolated heavy metal atoms can be included as markers into complex molecules to track their structural changes using ADF-STEM on graphene supports, providing an effective method to study a diverse range of complex organic materials at the single molecule level.
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Affiliation(s)
- Mihael A Gerkman
- Department of Chemistry , Brandeis University , 415 South Street , Waltham , Massachusetts 02453 , United States
| | - Sapna Sinha
- Department of Materials , University of Oxford , 16 Parks Road , Oxford OX1 3PH , United Kingdom
| | - Jamie H Warner
- Department of Materials , University of Oxford , 16 Parks Road , Oxford OX1 3PH , United Kingdom
| | - Grace G D Han
- Department of Chemistry , Brandeis University , 415 South Street , Waltham , Massachusetts 02453 , United States
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11
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Stylianou A, Kontomaris SV, Grant C, Alexandratou E. Atomic Force Microscopy on Biological Materials Related to Pathological Conditions. SCANNING 2019; 2019:8452851. [PMID: 31214274 PMCID: PMC6535871 DOI: 10.1155/2019/8452851] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 02/23/2019] [Accepted: 03/07/2019] [Indexed: 05/16/2023]
Abstract
Atomic force microscopy (AFM) is an easy-to-use, powerful, high-resolution microscope that allows the user to image any surface and under any aqueous condition. AFM has been used in the investigation of the structural and mechanical properties of a wide range of biological matters including biomolecules, biomaterials, cells, and tissues. It provides the capacity to acquire high-resolution images of biosamples at the nanoscale and allows at readily carrying out mechanical characterization. The capacity of AFM to image and interact with surfaces, under physiologically relevant conditions, is of great importance for realistic and accurate medical and pharmaceutical applications. The aim of this paper is to review recent trends of the use of AFM on biological materials related to health and sickness. First, we present AFM components and its different imaging modes and we continue with combined imaging and coupled AFM systems. Then, we discuss the use of AFM to nanocharacterize collagen, the major fibrous protein of the human body, which has been correlated with many pathological conditions. In the next section, AFM nanolevel surface characterization as a tool to detect possible pathological conditions such as osteoarthritis and cancer is presented. Finally, we demonstrate the use of AFM for studying other pathological conditions, such as Alzheimer's disease and human immunodeficiency virus (HIV), through the investigation of amyloid fibrils and viruses, respectively. Consequently, AFM stands out as the ideal research instrument for exploring the detection of pathological conditions even at very early stages, making it very attractive in the area of bio- and nanomedicine.
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Affiliation(s)
- Andreas Stylianou
- Cancer Biophysics Laboratory, Department of Mechanical and Manufacturing Engineering, University of Cyprus, Nicosia 2238, Cyprus
| | - Stylianos-Vasileios Kontomaris
- Mobile Radio Communications Laboratory, School of Electrical and Computer Engineering, National Technical University of Athens, Iroon Polytechniou, Athens 15780, Greece
- Athens Metropolitan College, Sorou 74, Marousi 15125, Greece
| | - Colin Grant
- Hitachi High-Technologies Europe, Techspace One, Keckwick Lane, Warrington WA4 4AB, UK
| | - Eleni Alexandratou
- Biomedical Optics and Applied Biophysics Laboratory, School of Electrical and Computer Engineering, National Technical University of Athens, Iroon Polytechniou, Athens 15780, Greece
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12
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Hartman B, Andersson SB. Feature Tracking for High Speed AFM Imaging of Biopolymers. Int J Mol Sci 2018; 19:ijms19041044. [PMID: 29614750 PMCID: PMC5979492 DOI: 10.3390/ijms19041044] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2018] [Revised: 03/15/2018] [Accepted: 03/28/2018] [Indexed: 11/16/2022] Open
Abstract
The scanning speed of atomic force microscopes continues to advance with some current commercial microscopes achieving on the order of one frame per second and at least one reaching 10 frames per second. Despite the success of these instruments, even higher frame rates are needed with scan ranges larger than are currently achievable. Moreover, there is a significant installed base of slower instruments that would benefit from algorithmic approaches to increasing their frame rate without requiring significant hardware modifications. In this paper, we present an experimental demonstration of high speed scanning on an existing, non-high speed instrument, through the use of a feedback-based, feature-tracking algorithm that reduces imaging time by focusing on features of interest to reduce the total imaging area. Experiments on both circular and square gratings, as well as silicon steps and DNA strands show a reduction in imaging time by a factor of 3-12 over raster scanning, depending on the parameters chosen.
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Affiliation(s)
- Brett Hartman
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA.
| | - Sean B Andersson
- Department of Mechanical Engineering, Boston University, Boston, MA 02215, USA.
- Division of Systems Engineering, Boston University, Boston, MA 02215, USA.
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13
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Lyubchenko YL. Direct AFM Visualization of the Nanoscale Dynamics of Biomolecular Complexes. JOURNAL OF PHYSICS D: APPLIED PHYSICS 2018; 51:403001. [PMID: 30410191 PMCID: PMC6217977 DOI: 10.1088/1361-6463/aad898] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
High-speed AFM (HS-AFM) is an advanced technique with numerous applications in biology, particularly in molecular biophysics. Developed as a time-lapse AFM technique for direct imaging fully hydrated biological molecules, HS-AFM is currently capable of visualizing the dynamics of biological molecules and their complexes at a video-data acquisition rate. Spatial resolution at the nanometer level is another important characteristic of HS-AFM. This review focuses on examples of primarily protein-DNA complexes to illustrate the high temporal and spatial resolution capabilities of HS-AFM that have resulted in novel models and/or the functional mechanisms of these biological systems.
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Affiliation(s)
- Yuri L Lyubchenko
- Department of Pharmaceutical Sciences, University of Nebraska Medical Center, Omaha, NE 68198, USA
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14
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Ebeling D, Šekutor M, Stiefermann M, Tschakert J, Dahl JEP, Carlson RMK, Schirmeisen A, Schreiner PR. London Dispersion Directs On-Surface Self-Assembly of [121]Tetramantane Molecules. ACS NANO 2017; 11:9459-9466. [PMID: 28846392 DOI: 10.1021/acsnano.7b05204] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
London dispersion (LD) acts between all atoms and molecules in nature, but the role of LD interactions in the self-assembly of molecular layers is still poorly understood. In this study, direct visualization of single molecules using atomic force microscopy with CO-functionalized tips revealed the exact adsorption structures of bulky and highly polarizable [121]tetramantane molecules on Au(111) and Cu(111) surfaces. We determined the absolute molecular orientations of the completely sp3-hybridized tetramantanes on metal surfaces. Moreover, we demonstrate how LD drives this on-surface self-assembly of [121]tetramantane hydrocarbons, resulting in the formation of a highly ordered 2D lattice. Our experimental findings were underpinned by a systematic computational study, which allowed us to quantify the energies associated with LD interactions and to analyze intermolecular close contacts and attractions in detail.
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Affiliation(s)
- Daniel Ebeling
- Institute of Applied Physics, Justus-Liebig University , Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| | - Marina Šekutor
- Institute of Organic Chemistry, Justus-Liebig University , Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Marvin Stiefermann
- Institute of Applied Physics, Justus-Liebig University , Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| | - Jalmar Tschakert
- Institute of Applied Physics, Justus-Liebig University , Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| | - Jeremy E P Dahl
- Stanford Institute for Materials and Energy Sciences , Stanford, California 94305, United States
| | - Robert M K Carlson
- Stanford Institute for Materials and Energy Sciences , Stanford, California 94305, United States
| | - André Schirmeisen
- Institute of Applied Physics, Justus-Liebig University , Heinrich-Buff-Ring 16, 35392 Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus-Liebig University , Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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15
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Ultrahigh-resolution imaging of water networks by atomic force microscopy. Nat Commun 2017; 8:14313. [PMID: 28155856 PMCID: PMC5296746 DOI: 10.1038/ncomms14313] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 12/13/2016] [Indexed: 01/30/2023] Open
Abstract
Local defects in water layers growing on metal surfaces have a key influence on the wetting process at the surfaces; however, such minor structures are undetectable by macroscopic methods. Here, we demonstrate ultrahigh-resolution imaging of single water layers on a copper(110) surface by using non-contact atomic force microscopy (AFM) with molecular functionalized tips at 4.8 K. AFM with a probe tip terminated by carbon monoxide predominantly images oxygen atoms, whereas the contribution of hydrogen atoms is modest. Oxygen skeletons in the AFM images reveal that the water networks containing local defects and edges are composed of pentagonal and hexagonal rings. The results reinforce the applicability of AFM to characterize atomic structures of weakly bonded molecular assemblies. The structure of water in the first layer on surfaces is essential to our understanding of various phenomena, such as surface wettability and heterogeneous catalysis. Here, the authors use atomic force microscopy with a CO-functionalized tip to image water defects on copper surface at atomic resolution.
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Pozzi EA, Goubert G, Chiang N, Jiang N, Chapman CT, McAnally MO, Henry AI, Seideman T, Schatz GC, Hersam MC, Duyne RPV. Ultrahigh-Vacuum Tip-Enhanced Raman Spectroscopy. Chem Rev 2016; 117:4961-4982. [DOI: 10.1021/acs.chemrev.6b00343] [Citation(s) in RCA: 108] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
| | | | | | - Nan Jiang
- Department
of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, United States
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Tang B. “Seeing” the Invisibles at the Single-Molecule Level. Chem 2016. [DOI: 10.1016/j.chempr.2016.08.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Pilet N, Lisunova Y, Lamattina F, Stevenson SE, Pigozzi G, Paruch P, Fink RH, Hug HJ, Quitmann C, Raabe J. A single probe for imaging photons, electrons and physical forces. NANOTECHNOLOGY 2016; 27:235705. [PMID: 27146329 DOI: 10.1088/0957-4484/27/23/235705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The combination of complementary measurement techniques has become a frequent approach to improve scientific knowledge. Pairing of the high lateral resolution scanning force microscopy (SFM) with the spectroscopic information accessible through scanning transmission soft x-ray microscopy (STXM) permits assessing physical and chemical material properties with high spatial resolution. We present progress from the NanoXAS instrument towards using an SFM probe as an x-ray detector for STXM measurements. Just by the variation of one parameter, the SFM probe can be utilised to detect either sample photo-emitted electrons or transmitted photons. This allows the use of a single probe to detect electrons, photons and physical forces of interest. We also show recent progress and demonstrate the current limitations of using a high aspect ratio coaxial SFM probe to detect photo-emitted electrons with very high lateral resolution. Novel probe designs are proposed to further progress in using an SFM probe as a STXM detector.
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Affiliation(s)
- Nicolas Pilet
- Paul Scherrer Institut, CH-5232 Villigen PSI, Switzerland
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