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Filippi J, Casti P, Antonelli G, Murdocca M, Mencattini A, Corsi F, D'Orazio M, Pecora A, De Luca M, Curci G, Ghibelli L, Sangiuolo F, Neale SL, Martinelli E. Cell Electrokinetic Fingerprint: A Novel Approach Based on Optically Induced Dielectrophoresis (ODEP) for In-Flow Identification of Single Cells. SMALL METHODS 2024:e2300923. [PMID: 38693090 DOI: 10.1002/smtd.202300923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 04/04/2024] [Indexed: 05/03/2024]
Abstract
A novel optically induced dielectrophoresis (ODEP) system that can operate under flow conditions is designed for automatic trapping of cells and subsequent induction of 2D multi-frequency cell trajectories. Like in a "ping-pong" match, two virtual electrode barriers operate in an alternate mode with varying frequencies of the input voltage. The so-derived cell motions are characterized via time-lapse microscopy, cell tracking, and state-of-the-art machine learning algorithms, like the wavelet scattering transform (WST). As a cell-electrokinetic fingerprint, the dynamic of variation of the cell displacements happening, over time, is quantified in response to different frequency values of the induced electric field. When tested on two biological scenarios in the cancer domain, the proposed approach discriminates cellular dielectric phenotypes obtained, respectively, at different early phases of drug-induced apoptosis in prostate cancer (PC3) cells and for differential expression of the lectine-like oxidized low-density lipoprotein receptor-1 (LOX-1) transcript levels in human colorectal adenocarcinoma (DLD-1) cells. The results demonstrate increased discrimination of the proposed system and pose an additional basis for making ODEP-based assays addressing cancer heterogeneity for precision medicine and pharmacological research.
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Affiliation(s)
- Joanna Filippi
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Paola Casti
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Gianni Antonelli
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Michela Murdocca
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Via Montpellier 1, Rome, 00133, Italy
| | - Arianna Mencattini
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Francesca Corsi
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
- Department of Chemical Science and Technologies, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
| | - Michele D'Orazio
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Alessandro Pecora
- Italian Nation Research Council (CNR), Via del Fosso del Cavaliere 100, Rome, 00133, Italy
| | - Massimiliano De Luca
- Italian Nation Research Council (CNR), Via del Fosso del Cavaliere 100, Rome, 00133, Italy
| | - Giorgia Curci
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Lina Ghibelli
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
| | - Federica Sangiuolo
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Via Montpellier 1, Rome, 00133, Italy
| | - Steven L Neale
- James Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Eugenio Martinelli
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
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2
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Turcan I, Olariu MA. Dielectrophoretic Manipulation of Cancer Cells and Their Electrical Characterization. ACS COMBINATORIAL SCIENCE 2020; 22:554-578. [PMID: 32786320 DOI: 10.1021/acscombsci.0c00109] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Electromanipulation and electrical characterization of cancerous cells is becoming a topic of high interest as the results reported to date demonstrate a good differentiation among various types of cells from an electrical viewpoint. Dielectrophoresis and broadband dielectric spectroscopy are complementary tools for sorting, identification, and characterization of malignant cells and were successfully used on both primary tumor cells and culture cells as well. However, the literature is presenting a plethora of studies with respect to electrical evaluation of these type of cells, and this review is reporting a collection of information regarding the functioning principles of different types of dielectrophoresis setups, theory of cancer cell polarization, and electrical investigation (including here the polarization mechanisms). The interpretation of electrical characteristics against frequency is discussed with respect to interfacial/Maxwell-Wagner polarization and the parasitic influence of electrode polarization. Moreover, the electrical equivalent circuits specific to biological cells polarizations are discussed for a good understanding of the cells' morphology influence. The review also focuses on advantages of specific low-conductivity buffers employed currently for improving the efficiency of dielectrophoresis and provides a set of synthesized data from the literature highlighting clear differentiation between the crossover frequencies of different cancerous cells.
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Affiliation(s)
- Ina Turcan
- Department of Electrical Measurements and Materials, Faculty of Electrical Engineering and Information Technology, Gheorghe Asachi Technical University of Iasi, Profesor Dimitrie Mangeron Boulevard, No. 21−23, Iasi 700050, Romania
| | - Marius Andrei Olariu
- Department of Electrical Measurements and Materials, Faculty of Electrical Engineering and Information Technology, Gheorghe Asachi Technical University of Iasi, Profesor Dimitrie Mangeron Boulevard, No. 21−23, Iasi 700050, Romania
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3
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Choi S, Lee H, Lee S, Park I, Kim YS, Key J, Lee SY, Yang S, Lee SW. A novel automatic segmentation and tracking method to measure cellular dielectrophoretic mobility from individual cell trajectories for high throughput assay. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 195:105662. [PMID: 32712504 DOI: 10.1016/j.cmpb.2020.105662] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 07/09/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE The dielectrophoresis (DEP) technique is increasingly being recognised as a potentially valuable tool for non-contact manipulation of numerous cells as well as for biological single cell analysis with non-invasive characterisation of a cell's electrical properties. Several studies have attempted to track multiple cells to characterise their cellular DEP mobility. However, they encountered difficulties in simultaneously tracking the movement of a large number of individual cells in a bright-field image sequence because of interference from the background electrode pattern. Consequently, this present study aims to develop an automatic system for imaging-based characterisation of cellular DEP mobility, which enables the simultaneous tracking of several hundred of cells inside a microfluidic device. METHODS The proposed method for segmentation and tracking of cells consists of two main stages: pre-processing and particle centre localisation. In the pre-processing stage, background subtraction and contrast enhancement were performed to distinguish the cell region from the background image. In the particle centre localisation stage, the unmarked cell was automatically detected via graph-cut algorithm-based K-means clustering. RESULTS Our algorithm enabled segmentation and tracking of numerous Michigan Cancer Foundation-7 (MCF-7) cell trajectories while the DEP force was oscillated between positive and negative. The cell tracking accuracy and cell count capability was at least 90% of the total number of cells with the newly developed algorithm. In addition, the cross-over frequency was measured by analysing the segmented and tracked trajectory data of the cellular movements caused by the positive and negative DEP force. The measured cross-over frequency was compared with previous results. The multi-cellular movements investigation based on the measured cross-over frequency was repeated until the viability of cells was unchanged in the same environment as in a microfluidic device. The results were statistically consistent, indicating that the developed algorithm was reliable for the investigation of DEP cellular mobility. CONCLUSION This study developed a powerful platform to simultaneously measure the DEP-induced trajectories of numerous cells, and to investigate in a robust, efficient, and accurate manner the DEP properties at both the single cell and cell ensemble level.
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Affiliation(s)
- Seungyeop Choi
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Hyunwoo Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Sena Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Insu Park
- Holonyak Micro and Nanotechnology Laboratory, University of Illinois, Urbana, IL, USA
| | - Yoon Suk Kim
- Department of Biomedical Laboratory Science, Yonsei University, Wonju 26493, Republic of Korea
| | - Jaehong Key
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Sei Young Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Sejung Yang
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea.
| | - Sang Woo Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea.
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4
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Han P, Yosinski S, Kobos ZA, Chaudhury R, Lee JS, Fahmy TM, Reed MA. Continuous Label-Free Electronic Discrimination of T Cells by Activation State. ACS NANO 2020; 14:8646-8657. [PMID: 32530598 DOI: 10.1021/acsnano.0c03018] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The sensitivity and speed with which the immune system reacts to host disruption is unrivaled by any detection method for pathogenic biomarkers or infectious signatures. Engagement of cellular immunity in response to infections or cancer is contingent upon activation and subsequent cytotoxic activity by T cells. Thus, monitoring T cell activation can reliably serve as a metric for disease diagnosis as well as therapeutic prognosis. Rapid and direct quantification of T cell activation states, however, has been hindered by challenges associated with antigen target identification, labeling requirements, and assay duration. Here we present an electronic, label-free method for simultaneous separation and evaluation of T cell activation states. Our device utilizes a microfluidic design integrated with nanolayered electrode structures for dielectrophoresis (DEP)-driven discrimination of activated vs naïve T cells at single-cell resolution and demonstrates rapid (<2 min) separation of T cells at high single-pass efficiency as quantified by an on-chip Coulter counter module. Our device represents a microfluidic tool for electronic assessment of immune activation states and, hence, a portable diagnostic for quantitative evaluation of immunity and disease state. Further, its ability to achieve label-free enrichment of activated immune cells promises clinical utility in cell-based immunotherapies.
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Affiliation(s)
- Patrick Han
- Department of Chemical & Environmental Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Shari Yosinski
- Department of Biomedical Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Zachary A Kobos
- Department of Electrical Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Rabib Chaudhury
- Department of Chemical & Environmental Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Jung Seok Lee
- Department of Biomedical Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Tarek M Fahmy
- Department of Chemical & Environmental Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
- Department of Biomedical Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
| | - Mark A Reed
- Department of Electrical Engineering, School of Engineering and Applied Sciences, Yale University, New Haven, Connecticut 06511, United States
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5
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Jahangiri M, Ranjbar-Torkamani M, Abadijoo H, Ghaderinia M, Ghafari H, Mamdouh A, Abdolahad M. Low frequency stimulation induces polarization-based capturing of normal, cancerous and white blood cells: a new separation method for circulating tumor cell enrichment or phenotypic cell sorting. Analyst 2020; 145:7636-7645. [DOI: 10.1039/d0an01033b] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Separation of cancerous cells from normal cells is of broad importance in a large number of cancer diagnosis and treatment methods.
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Affiliation(s)
- Mojtaba Jahangiri
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Mina Ranjbar-Torkamani
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Hamed Abadijoo
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Mohammadreza Ghaderinia
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Hadi Ghafari
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Amir Mamdouh
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
| | - Mohammad Abdolahad
- Nano Bio Electronics Laboratory
- Cancer Electronics research group
- School of Electrical and Computer Engineering
- College of Engineering
- University of Tehran
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6
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S Iliescu F, Sim WJ, Heidari H, P Poenar D, Miao J, Taylor HK, Iliescu C. Highlighting the uniqueness in dielectrophoretic enrichment of circulating tumor cells. Electrophoresis 2019; 40:1457-1477. [PMID: 30676660 DOI: 10.1002/elps.201800446] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Revised: 01/19/2019] [Accepted: 01/20/2019] [Indexed: 12/14/2022]
Abstract
Circulating tumor cells (CTCs) play an essential role in the metastasis of tumors, and thus can serve as a valuable prognostic factor for malignant diseases. As a result, the ability to isolate and characterize CTCs is essential. This review underlines the potential of dielectrophoresis for CTCs enrichment. It begins by summarizing the key performance parameters and challenges of CTCs isolation using microfluidics. The two main categories of CTCs enrichment-affinity-based and label-free methods-are analysed, emphasising the advantages and disadvantages of each as well as their clinical potential. While the main argument in favour of affinity-based methods is the strong specificity of CTCs isolation, the major advantage of the label-free technologies is in preserving the integrity of the cellular membrane, an essential requirement for downstream characterization. Moving forward, we try to answer the main question: "What makes dielectrophoresis a method of choice in CTCs isolation?" The uniqueness of dielectrophoretic CTCs enrichment resides in coupling the specificity of the isolation process with the conservation of the membrane surface. The specificity of the dielectrophoretic method stems from the differences in the dielectric properties between CTCs and other cells in the blood: the capacitances of the malignantly transformed cellular membranes of CTCs differ from those of other cells. Examples of dielectrophoretic devices are described and their performance evaluated. Critical requirements for using dielectrophoresis to isolate CTCs are highlighted. Finally, we consider that DEP has the potential of becoming a cytometric method for large-scale sorting and characterization of cells.
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Affiliation(s)
| | - Wen Jing Sim
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.,NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore, Singapore
| | - Hossein Heidari
- Department of Mechanical Engineering, University of California, Berkeley, CA, USA
| | - Daniel P Poenar
- VALENS-Centre for Bio Devices and Signal Analysis, Nanyang Technological University, Singapore
| | - Jianmin Miao
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
| | - Hayden K Taylor
- Department of Mechanical Engineering, University of California, Berkeley, CA, USA
| | - Ciprian Iliescu
- Biomedical Institute for Global Health Research & Technology (BIGHEART), National University of Singapore, Singapore
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7
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Choi S, Ko K, Lim J, Kim SH, Woo SH, Kim YS, Key J, Lee SY, Park IS, Lee SW. Non-Linear Cellular Dielectrophoretic Behavior Characterization Using Dielectrophoretic Tweezers-Based Force Spectroscopy inside a Microfluidic Device. SENSORS 2018; 18:s18103543. [PMID: 30347732 PMCID: PMC6210972 DOI: 10.3390/s18103543] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 10/10/2018] [Accepted: 10/17/2018] [Indexed: 11/16/2022]
Abstract
Characterization of cellular dielectrophoretic (DEP) behaviors, when cells are exposed to an alternating current (AC) electric field of varying frequency, is fundamentally important to many applications using dielectrophoresis. However, to date, that characterization has been performed with monotonically increasing or decreasing frequency, not with successive increases and decreases, even though cells might behave differently with those frequency modulations due to the nonlinear cellular electrodynamic responses reported in previous works. In this report, we present a method to trace the behaviors of numerous cells simultaneously at the single-cell level in a simple, robust manner using dielectrophoretic tweezers-based force spectroscopy. Using this method, the behaviors of more than 150 cells were traced in a single environment at the same time, while a modulated DEP force acted upon them, resulting in characterization of nonlinear DEP cellular behaviors and generation of different cross-over frequencies in living cells by modulating the DEP force. This study demonstrated that living cells can have non-linear di-polarized responses depending on the modulation direction of the applied frequency as well as providing a simple and reliable platform from which to measure a cellular cross-over frequency and characterize its nonlinear property.
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Affiliation(s)
- Seungyeop Choi
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
| | - Kwanhwi Ko
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
| | - Jongwon Lim
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
| | - Sung Hoon Kim
- Department of Biomedical Laboratory Science, Yonsei University, Wonju 26493, Korea.
| | - Sung-Hun Woo
- Department of Biomedical Laboratory Science, Yonsei University, Wonju 26493, Korea.
| | - Yoon Suk Kim
- Department of Biomedical Laboratory Science, Yonsei University, Wonju 26493, Korea.
| | - Jaehong Key
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
| | - Sei Young Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
| | - In Su Park
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
- Micro and Nanotechnology Laboratory, University of Illinois at Urbana⁻Champaign, Urbana, IL 61801, USA.
| | - Sang Woo Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea.
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8
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Teng Y, Zhu K, Xiong C, Huang J. Electrodeformation-Based Biomechanical Chip for Quantifying Global Viscoelasticity of Cancer Cells Regulated by Cell Cycle. Anal Chem 2018; 90:8370-8378. [DOI: 10.1021/acs.analchem.8b00584] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
| | - Kui Zhu
- Beijing Advanced Innovation Center for Food Nutrition and Human Health, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China
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9
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Wenger C, Miranda PC, Salvador R, Thielscher A, Bomzon Z, Giladi M, Mrugala MM, Korshoej AR. A Review on Tumor-Treating Fields (TTFields): Clinical Implications Inferred From Computational Modeling. IEEE Rev Biomed Eng 2018; 11:195-207. [DOI: 10.1109/rbme.2017.2765282] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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10
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Harrison RP, Ruck S, Rafiq QA, Medcalf N. Decentralised manufacturing of cell and gene therapy products: Learning from other healthcare sectors. Biotechnol Adv 2017; 36:345-357. [PMID: 29278756 DOI: 10.1016/j.biotechadv.2017.12.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 12/18/2017] [Accepted: 12/19/2017] [Indexed: 12/13/2022]
Abstract
Decentralised or 'redistributed' manufacturing represents an attractive choice for production of some cell and gene therapies (CGTs), in particular personalised therapies. Decentralised manufacturing splits production into various locations or regions and in doing so, imposes organisational changes on the structure of a company. This confers a significant advantage by democratising supply, creating jobs without geographical restriction to the central hub and allowing a more flexible response to external pressures and demands. This comes with challenges that need to be addressed including, a reduction in oversight, decision making and control by central management which can be critical in maintaining quality in healthcare product manufacturing. The unwitting adoption of poor business strategies at an early stage in development has the potential to undermine the market success of otherwise promising products. To maximise the probability of realising the benefits that decentralised manufacturing of CGTs has to offer, it is important to examine alternative operational paradigms to learn from their successes and to avoid their failures. Whilst no other situation is quite the same as CGTs, some illustrative examples of established manufacturing paradigms are described. Each of these shares a unique attribute with CGTs which aids understanding of how decentralised manufacturing might be implemented for CGTs in a similar manner. In this paper we present a collection of paradigms that can be drawn on in formulating a roadmap to success for decentralised production of CGTs.
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Affiliation(s)
- Richard P Harrison
- Centre for Biological Engineering, Holywell Park, Loughborough University, Loughborough LE11 3TU, UK.
| | - Steven Ruck
- Centre for Biological Engineering, Holywell Park, Loughborough University, Loughborough LE11 3TU, UK
| | - Qasim A Rafiq
- Department of Biochemical Engineering, Faculty of Engineering Science, University College London, Gower Street, London, WC1E 6BT, UK
| | - Nicholas Medcalf
- Centre for Biological Engineering, Holywell Park, Loughborough University, Loughborough LE11 3TU, UK
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11
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Dryden MDM, Fobel R, Fobel C, Wheeler AR. Upon the Shoulders of Giants: Open-Source Hardware and Software in Analytical Chemistry. Anal Chem 2017; 89:4330-4338. [PMID: 28379683 DOI: 10.1021/acs.analchem.7b00485] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Isaac Newton famously observed that "if I have seen further it is by standing on the shoulders of giants." We propose that this sentiment is a powerful motivation for the "open-source" movement in scientific research, in which creators provide everything needed to replicate a given project online, as well as providing explicit permission for users to use, improve, and share it with others. Here, we write to introduce analytical chemists who are new to the open-source movement to best practices and concepts in this area and to survey the state of open-source research in analytical chemistry. We conclude by considering two examples of open-source projects from our own research group, with the hope that a description of the process, motivations, and results will provide a convincing argument about the benefits that this movement brings to both creators and users.
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Affiliation(s)
- Michael D M Dryden
- Department of Chemistry, University of Toronto , 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Ryan Fobel
- Department of Chemistry, University of Toronto , 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada.,Donnelly Centre for Cellular and Biomolecular Research , 160 College Street, Toronto, Ontario M5S 3E1, Canada
| | - Christian Fobel
- Department of Chemistry, University of Toronto , 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada.,Donnelly Centre for Cellular and Biomolecular Research , 160 College Street, Toronto, Ontario M5S 3E1, Canada
| | - Aaron R Wheeler
- Department of Chemistry, University of Toronto , 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada.,Donnelly Centre for Cellular and Biomolecular Research , 160 College Street, Toronto, Ontario M5S 3E1, Canada.,Institute of Biomaterials and Biomedical Engineering, University of Toronto , 164 College Street, Toronto, Ontario M5S 3G9, Canada
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12
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Vaillier C, Honegger T, Kermarrec F, Gidrol X, Peyrade D. Label-Free Electric Monitoring of Human Cancer Cells as a Potential Diagnostic Tool. Anal Chem 2016; 88:9022-8. [DOI: 10.1021/acs.analchem.6b01648] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Clarisse Vaillier
- Université Grenoble Alpes, F-38000 Grenoble, France
- CNRS, LTM, F-38000 Grenoble, France
| | - Thibault Honegger
- Université Grenoble Alpes, F-38000 Grenoble, France
- CNRS, LTM, F-38000 Grenoble, France
| | - Frédérique Kermarrec
- Université Grenoble Alpes, F-38000 Grenoble, France
- CEA, iRTSV,
Biologie
à Grande Echelle, F-38054 Grenoble, France
- INSERM, U1038, F-38054 Grenoble, France
| | - Xavier Gidrol
- Université Grenoble Alpes, F-38000 Grenoble, France
- CEA, iRTSV,
Biologie
à Grande Echelle, F-38054 Grenoble, France
- INSERM, U1038, F-38054 Grenoble, France
| | - David Peyrade
- Université Grenoble Alpes, F-38000 Grenoble, France
- CNRS, LTM, F-38000 Grenoble, France
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