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Rathnayaka C, Amarasekara CA, Akabirov K, Murphy MC, Park S, Witek MA, Soper SA. Nanofluidic devices for the separation of biomolecules. J Chromatogr A 2022; 1683:463539. [PMID: 36223665 PMCID: PMC9795076 DOI: 10.1016/j.chroma.2022.463539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Revised: 09/13/2022] [Accepted: 09/15/2022] [Indexed: 12/30/2022]
Abstract
Over the last 30-years, microchip electrophoresis and its applications have expanded due to the benefits it offers. Nanochip electrophoresis, on the other hand, is viewed as an evolving area of electrophoresis because it offers some unique advantages not associated with microchip electrophoresis. These advantages arise from unique phenomena that occur in the nanometer domain not readily apparent in the microscale domain due to scale-dependent effects. Scale-dependent effects associated with nanochip electrophoresis includes high surface area-to-volume ratio, electrical double layer overlap generating parabolic flow even for electrokinetic pumping, concentration polarization, transverse electromigration, surface charge dominating flow, and surface roughness. Nanochip electrophoresis devices consist of channels with dimensions ranging from 1 to 1000 nm including classical (1-100 nm) and extended (100 nm - 1000 nm) nanoscale devices. In this review, we highlight scale-dependent phenomena associated with nanochip electrophoresis and the utilization of those phenomena to provide unique biomolecular separations that are not possible with microchip electrophoresis. We will also review the range of materials used for nanoscale separations and the implication of material choice for the top-down fabrication and operation of these devices. We will also provide application examples of nanochip electrophoresis for biomolecule separations with an emphasis on nano-electrophoresis (nEP) and nano-electrochromatography (nEC).
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Affiliation(s)
- Chathurika Rathnayaka
- Department of Chemistry, The University of Kansas, Lawrence, KS 66045, USA; Center of BioModular Multiscale Systems for Precision Medicine, USA
| | - Charuni A Amarasekara
- Department of Chemistry, The University of Kansas, Lawrence, KS 66045, USA; Center of BioModular Multiscale Systems for Precision Medicine, USA
| | - Khurshed Akabirov
- Department of Chemistry, The University of Kansas, Lawrence, KS 66045, USA; Center of BioModular Multiscale Systems for Precision Medicine, USA
| | - Michael C Murphy
- Center of BioModular Multiscale Systems for Precision Medicine, USA; Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA 70810, USA
| | - Sunggook Park
- Center of BioModular Multiscale Systems for Precision Medicine, USA; Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA 70810, USA
| | - Malgorzata A Witek
- Department of Chemistry, The University of Kansas, Lawrence, KS 66045, USA; Center of BioModular Multiscale Systems for Precision Medicine, USA
| | - Steven A Soper
- Department of Chemistry, The University of Kansas, Lawrence, KS 66045, USA; Center of BioModular Multiscale Systems for Precision Medicine, USA; Department of Mechanical Engineering, The University of Kansas, Lawrence, KS 66045, USA; Bioengineering Program, The University of Kansas, Lawrence, KS 66045, USA; KU Cancer Center and Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
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Yamamoto K, Morikawa K, Imanaka H, Imamura K, Kitamori T. Kinetics of Enzymatic Reactions at the Solid/Liquid Interface in Nanofluidic Channels. Anal Chem 2022; 94:15686-15694. [DOI: 10.1021/acs.analchem.2c02878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Koki Yamamoto
- Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo113-8656, Japan
| | - Kyojiro Morikawa
- Institute of Nanoengineering and Microsystems, Department of Power Mechanical Engineering, National Tsing Hua University, No. 101, Section 2, Kuang-Fu Road, Hsinchu300044, Taiwan, ROC
- Collaborative Research Organization for Micro and Nano Multifunctional Devices, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo113-8656, Japan
| | - Hiroyuki Imanaka
- Division of Applied Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushima-Naka, Kita-Ku, Okayama700-8530, Japan
| | - Koreyoshi Imamura
- Division of Applied Chemistry, Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Tsushima-Naka, Kita-Ku, Okayama700-8530, Japan
| | - Takehiko Kitamori
- Institute of Nanoengineering and Microsystems, Department of Power Mechanical Engineering, National Tsing Hua University, No. 101, Section 2, Kuang-Fu Road, Hsinchu300044, Taiwan, ROC
- Collaborative Research Organization for Micro and Nano Multifunctional Devices, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo113-8656, Japan
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Diffraction-based label-free photothermal detector for separation analyses in a nanocapillary. J Chromatogr A 2021; 1648:462214. [PMID: 34004365 DOI: 10.1016/j.chroma.2021.462214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 04/19/2021] [Accepted: 04/25/2021] [Indexed: 11/23/2022]
Abstract
Miniaturization of column diameter in liquid chromatography is one of the major trends in separation sciences toward single-cell proteomics and metabolomics. Micro/nanoscale open tubular (OT) capillaries are promising tools for efficient separation analyses of the ultra-small volume of samples. However, highly sensitive and label-free on-column detection is still challenging for such ultra-small capillaries. In this study, we developed a photothermal detector using optical diffraction phenomena by a single nanocapillary. Our detection method realized concentration determination of unlabeled sample solutions in a nanocapillary with 460 nm inner diameter. The calculated limit of detection was 0.12 µM, which corresponds to 16 molecules in a detection volume of 0.23 fL. Furthermore, normal-phase chromatography was performed on a 12 cm long nanocapillary, and femtoliter sample injection, efficient separation, and label-free detection of dye molecules were demonstrated. Our photothermal detector will be widely used as a universal tool for chemical/biological analyses using capillaries with micro/nanoscale diameters.
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Li Y, Liu D, Zhu C, Shen X, Liu Y, You T. Sensitivity programmable ratiometric electrochemical aptasensor based on signal engineering for the detection of aflatoxin B1 in peanut. JOURNAL OF HAZARDOUS MATERIALS 2020; 387:122001. [PMID: 31901843 DOI: 10.1016/j.jhazmat.2019.122001] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Revised: 12/11/2019] [Accepted: 12/29/2019] [Indexed: 06/10/2023]
Abstract
Accurately monitoring of aflatoxin B1 (AFB1), the most hazardous mycotoxin in agricultural products, is essential for the public health, but various testing demands (e.g. detection range, sensitivity) for different samples can be challenging for sensors. Here, we developed a sensitivity-programmable ratiometric electrochemical aptasensor for AFB1 analysis in peanut. Thionine functionalized reduced graphene oxide (THI-rGO) served as reference signal generator, ferrocene-labelled aptamer (Fc-apt) output the response signal. During analysis, the formation of Fc-apt-AFB1 complex led to its stripping from the electrode and faded the current intensity of Fc (IFc), while the current intensity of THI (ITHI) was enhanced. And ratiometric detection of AFB1 was achieved by using the current intensity ratio (ITHI/IFc) as quantitative signal. Compared with ratiometric strategies that highly rely on the labelled aptamers, the proposed strategy could regulate the value of ITHI/IFc by changing the modification of Fc-apt. And the detection sensitivity was found to be closely related to ITHI/IFc. Under the optimal conditions, the fabricated aptasensor with a dynamic range from 0.05-20 ng mL-1 and a detection limit of 0.016 ng mL-1 for AFB1 analysis. Besides, it exhibited excellent selectivity, reliability and reproducibility. The proposed sensitivity-programmable biosensor can be applied to detect various aptamer-recognized mycotoxins in agricultural sensing.
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Affiliation(s)
- Yuye Li
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Dong Liu
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China.
| | - Chengxi Zhu
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Xiuli Shen
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Yang Liu
- College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Tianyan You
- Key Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Equipment Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China.
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Shimizu H, Takeda S, Mawatari K, Kitamori T. Ultrasensitive detection of nonlabelled bovine serum albumin using photothermal optical phase shift detection with UV excitation. Analyst 2020; 145:2580-2585. [PMID: 32195506 DOI: 10.1039/d0an00037j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Ultrasensitive detection of nonlabelled bovine serum albumin is performed in micro/nanofluidic chips using a photothermal optical phase shift (POPS) detection system. Currently, micro- and nanofluidics allow the analysis of various single cells, and their targets of interest are shifting from nucleic acids to proteins. Previously, our group developed photothermal detection techniques for the sensitive detection of nonfluorescent molecules. For example, we developed a thermal lens microscope (TLM) with ultrahigh sensitivity at the single-molecule level and a POPS detector that is applicable to nanochannels smaller than the wavelength of light. The POPS detector also realized the detection of nonlabelled proteins in nanochannels, although its detection sensitivity is less than that of the TLM in microchannels due to insufficient background light reduction. To overcome this problem, we developed a new POPS detector using relay optics for further reduction of the background light. In addition, heat transfer from the sample solution to the nanochannel wall was thoroughly investigated to achieve ultrahigh sensitivity. The limit of detection (LOD) obtained with the new POPS detector is 30 molecules in 1.0 fL. Considering this LOD, the performance of the new POPS detector is comparable with that of the TLM. Owing to the applicability of the POPS detector for sensitive detection even in nanochannels or single-μm channels, which cannot be realized with the TLM, combinations of the POPS detector and separation techniques employing unique nanochannel properties will contribute to advances in single-cell proteomics in the future.
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Affiliation(s)
- Hisashi Shimizu
- International Research Center for Neurointelligence, The University of Tokyo, 7-3-1, Hongo, Bunkyo, Tokyo 113-0033, Japan.
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Tsuyama Y, Mawatari K. Detection and Characterization of Individual Nanoparticles in a Liquid by Photothermal Optical Diffraction and Nanofluidics. Anal Chem 2020; 92:3434-3439. [DOI: 10.1021/acs.analchem.9b05554] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yoshiyuki Tsuyama
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo, Tokyo 113-8656, Japan
| | - Kazuma Mawatari
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo, Tokyo 113-8656, Japan
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Tsuyama Y, Mawatari K. Nonfluorescent Molecule Detection in 102 nm Nanofluidic Channels by Photothermal Optical Diffraction. Anal Chem 2019; 91:9741-9746. [DOI: 10.1021/acs.analchem.9b01334] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Yoshiyuki Tsuyama
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1, Hongo,
Bunkyo, Tokyo 113-8656, Japan
| | - Kazuma Mawatari
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1, Hongo,
Bunkyo, Tokyo 113-8656, Japan
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